Wall clock time and date at job start Mon Mar 30 2020 06:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46950 * 2 1 4 4 C 1.53001 * 109.47133 * 299.99903 * 3 2 1 5 5 C 1.53005 * 109.47256 * 59.99899 * 3 2 1 6 6 N 1.46501 * 109.47412 * 180.02562 * 3 2 1 7 7 C 1.39843 * 120.00056 * 184.54907 * 6 3 2 8 8 C 1.39596 * 119.84430 * 354.51584 * 7 6 3 9 9 C 1.38061 * 120.55353 * 179.97438 * 8 7 6 10 10 C 1.38734 * 120.21597 * 0.02562 * 9 8 7 11 11 N 1.38871 * 120.15765 * 179.97438 * 10 9 8 12 12 C 1.41561 * 119.67649 * 0.02562 * 10 9 8 13 13 C 1.41031 * 120.26396 * 180.02562 * 12 10 9 14 14 H 1.07992 * 120.00260 * 34.90981 * 13 12 10 15 15 C 1.39887 * 119.99479 * 214.90230 * 13 12 10 16 16 N 1.30899 * 120.00371 * 5.07488 * 15 13 12 17 17 Si 1.86804 * 119.99723 * 185.07014 * 15 13 12 18 18 H 1.48501 * 109.46948 * 60.00553 * 17 15 13 19 19 H 1.48504 * 109.47086 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47215 * 300.00484 * 17 15 13 21 21 C 1.38012 * 119.83593 * 174.23660 * 7 6 3 22 22 H 1.09001 * 109.47573 * 60.00303 * 1 2 3 23 23 H 1.09000 * 109.47251 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47182 * 299.99708 * 1 2 3 25 25 H 1.08999 * 109.47182 * 240.00292 * 2 1 3 26 26 H 1.08996 * 109.47126 * 119.99580 * 2 1 3 27 27 H 1.09003 * 109.47080 * 175.05848 * 4 3 2 28 28 H 1.09001 * 109.47238 * 55.05909 * 4 3 2 29 29 H 1.08997 * 109.47253 * 295.06082 * 4 3 2 30 30 H 1.09004 * 109.47014 * 304.96775 * 5 3 2 31 31 H 1.08999 * 109.46947 * 64.96395 * 5 3 2 32 32 H 1.09004 * 109.47009 * 184.96911 * 5 3 2 33 33 H 0.97003 * 119.99171 * 4.54928 * 6 3 2 34 34 H 1.08005 * 119.72487 * 359.97438 * 8 7 6 35 35 H 1.08000 * 119.88914 * 180.02562 * 9 8 7 36 36 H 0.97001 * 120.00237 * 359.97438 * 11 10 9 37 37 H 0.97003 * 119.99398 * 180.02562 * 11 10 9 38 38 H 0.97001 * 119.99847 * 179.97438 * 16 15 13 39 39 H 1.07997 * 120.11626 * 0.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 -1.2493 5 6 1.5299 2.1638 1.2493 6 7 3.5050 1.4426 -0.0006 7 6 4.2041 2.6499 0.0953 8 6 3.5076 3.8595 0.0760 9 6 4.1830 5.0600 0.1702 10 6 5.5655 5.0761 0.2850 11 7 6.2437 6.2842 0.3793 12 6 6.2814 3.8550 0.3046 13 6 7.6869 3.8569 0.4213 14 1 8.1777 4.6067 1.0240 15 6 8.4452 2.8874 -0.2434 16 7 7.8606 2.0402 -1.0521 17 14 10.2921 2.8017 0.0231 18 1 10.5740 2.5546 1.4600 19 1 10.8588 1.6960 -0.7903 20 1 10.9119 4.0867 -0.3891 21 6 5.5791 2.6396 0.2145 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 1.8192 3.2138 -1.2061 28 1 0.4436 2.0877 -1.2947 29 1 1.9637 1.7036 -2.1370 30 1 0.4435 2.0874 1.2948 31 1 1.9641 1.7039 2.1370 32 1 1.8188 3.2140 1.2058 33 1 3.9899 0.6052 -0.0676 34 1 2.4313 3.8563 -0.0135 35 1 3.6333 5.9895 0.1546 36 1 5.7509 7.1196 0.3645 37 1 7.2104 6.2927 0.4591 38 1 8.3865 1.3682 -1.5133 39 1 6.1143 1.7017 0.2333 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166376312.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:34 Heat of formation + Delta-G solvation = 8.326908 kcal Electronic energy + Delta-G solvation = -18450.109135 eV Core-core repulsion = 15777.478870 eV Total energy + Delta-G solvation = -2672.630265 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.35861 -38.56436 -35.31100 -35.11294 -32.45821 -31.52846 -30.27049 -28.07832 -27.88777 -26.76032 -24.51884 -22.93694 -21.52303 -20.11383 -18.74768 -17.99222 -17.18112 -16.73478 -16.55246 -16.04196 -15.56315 -15.09950 -14.47735 -14.24801 -14.18146 -13.80867 -13.65562 -13.40573 -13.04534 -12.97066 -12.76195 -12.71587 -12.57357 -12.32218 -12.13632 -11.86365 -11.80882 -11.68728 -11.34729 -11.12578 -10.96975 -10.70024 -9.33556 -8.98370 -8.40011 -7.22549 -6.01932 1.17513 1.40621 1.50515 1.52962 1.68037 2.30139 2.93988 3.01758 3.79479 3.91199 3.95265 4.12212 4.30988 4.54747 4.59386 4.64025 4.72328 4.85232 4.90553 4.91242 5.10234 5.13233 5.20189 5.20351 5.27776 5.34546 5.41594 5.52351 5.58847 5.62046 5.75575 5.96998 6.12142 6.20282 6.36741 6.61298 7.03880 7.12046 7.20091 7.33291 7.51019 7.69532 8.61172 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.027256 B = 0.006347 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.039782 B = 4410.525206 C = 5180.775902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C 0.181 3.819 4 C -0.170 4.170 5 C -0.170 4.170 6 N -0.755 5.755 7 C 0.174 3.826 8 C -0.251 4.251 9 C -0.167 4.167 10 C 0.075 3.925 11 N -0.879 5.879 12 C 0.054 3.946 13 C -0.497 4.497 14 H 0.069 0.931 15 C 0.029 3.971 16 N -0.850 5.850 17 Si 0.976 3.024 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.209 4.209 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.384 0.616 34 H 0.137 0.863 35 H 0.111 0.889 36 H 0.390 0.610 37 H 0.389 0.611 38 H 0.275 0.725 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.769 -1.644 1.392 10.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C 0.094 3.906 4 C -0.228 4.228 5 C -0.228 4.228 6 N -0.388 5.388 7 C 0.074 3.926 8 C -0.274 4.274 9 C -0.191 4.191 10 C -0.028 4.028 11 N -0.423 5.423 12 C 0.049 3.951 13 C -0.530 4.530 14 H 0.087 0.913 15 C -0.181 4.181 16 N -0.480 5.480 17 Si 0.798 3.202 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.187 1.187 21 C -0.234 4.234 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.217 0.783 34 H 0.154 0.846 35 H 0.129 0.871 36 H 0.218 0.782 37 H 0.217 0.783 38 H 0.085 0.915 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.940 -1.845 1.241 11.163 hybrid contribution 1.643 -0.175 -0.108 1.656 sum -9.297 -2.021 1.132 9.581 Atomic orbital electron populations 1.21855 0.93194 1.02561 1.02795 1.21658 0.97935 0.94156 1.01907 1.20179 0.79718 0.96001 0.94679 1.22535 1.01630 1.01398 0.97243 1.22516 1.01569 1.01816 0.96917 1.44681 1.04412 1.04830 1.84868 1.17566 0.90477 0.86639 0.97921 1.20626 0.99057 0.90371 1.17352 1.20174 0.91792 0.97507 1.09664 1.18151 0.91576 0.86999 1.06037 1.41699 1.08729 1.03959 1.87865 1.17329 0.93420 0.89948 0.94387 1.19286 0.91946 1.13182 1.28559 0.91271 1.26517 1.04651 0.93882 0.93090 1.69942 1.38879 1.15994 1.23142 0.85355 0.77408 0.78542 0.78848 1.19035 1.20217 1.18664 1.20502 0.91341 0.97566 1.13984 0.91688 0.91536 0.91633 0.92098 0.92005 0.92276 0.89780 0.94014 0.89814 0.93917 0.91813 0.78297 0.84584 0.87099 0.78236 0.78289 0.91538 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.22 71.98 0.66 -1.92 16 2 C -0.12 -2.80 5.11 30.59 0.16 -2.64 16 3 C 0.18 5.34 0.83 3.61 0.00 5.35 16 4 C -0.17 -4.87 8.13 71.98 0.58 -4.28 16 5 C -0.17 -4.83 7.98 71.98 0.57 -4.26 16 6 N -0.75 -29.10 5.25 -299.42 -1.57 -30.67 16 7 C 0.17 8.15 6.23 38.14 0.24 8.39 16 8 C -0.25 -10.91 7.04 22.56 0.16 -10.76 16 9 C -0.17 -7.46 9.86 22.35 0.22 -7.24 16 10 C 0.07 3.66 6.79 38.97 0.26 3.92 16 11 N -0.88 -36.12 8.98 -50.31 -0.45 -36.57 16 12 C 0.05 3.00 5.50 -21.18 -0.12 2.88 16 13 C -0.50 -27.40 8.27 23.35 0.19 -27.20 16 14 H 0.07 3.63 7.00 -2.91 -0.02 3.61 16 15 C 0.03 1.53 5.31 85.23 0.45 1.98 16 16 N -0.85 -47.35 11.01 21.82 0.24 -47.11 16 17 Si 0.98 40.76 29.56 68.60 2.03 42.79 16 18 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 19 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 21 C -0.21 -11.38 8.44 22.81 0.19 -11.19 16 22 H 0.06 1.08 6.32 -2.39 -0.02 1.06 16 23 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 24 H 0.06 1.08 6.32 -2.39 -0.02 1.06 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.06 1.91 4.84 -2.39 -0.01 1.89 16 28 H 0.08 1.85 6.18 -2.39 -0.01 1.84 16 29 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.83 6.18 -2.38 -0.01 1.81 16 31 H 0.04 1.28 8.14 -2.39 -0.02 1.27 16 32 H 0.06 2.04 4.64 -2.39 -0.01 2.03 16 33 H 0.38 14.77 8.49 -92.71 -0.79 13.98 16 34 H 0.14 5.12 3.09 -2.91 -0.01 5.11 16 35 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 36 H 0.39 13.17 8.83 -92.71 -0.82 12.35 16 37 H 0.39 15.99 7.22 -92.71 -0.67 15.32 16 38 H 0.27 14.20 8.30 -92.71 -0.77 13.44 16 39 H 0.09 5.18 6.52 -2.91 -0.02 5.16 16 Total: -1.00 -62.37 297.54 2.65 -59.71 By element: Atomic # 1 Polarization: 60.00 SS G_CDS: -1.17 Total: 58.83 kcal Atomic # 6 Polarization: -50.56 SS G_CDS: 3.59 Total: -46.97 kcal Atomic # 7 Polarization: -112.57 SS G_CDS: -1.78 Total: -114.36 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -62.37 2.65 -59.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166376312.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.040 kcal (2) G-P(sol) polarization free energy of solvation -62.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds