Wall clock time and date at job start Mon Mar 30 2020 06:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47302 * 2 1 4 4 C 1.53003 * 109.47211 * 120.00113 * 2 1 3 5 5 N 1.46498 * 109.47048 * 65.00085 * 4 2 1 6 6 C 1.46501 * 119.99871 * 269.99917 * 5 4 2 7 7 C 1.39848 * 120.00286 * 89.99854 * 5 4 2 8 8 C 1.39607 * 119.84002 * 0.02562 * 7 5 4 9 9 C 1.38056 * 120.55344 * 179.97438 * 8 7 5 10 10 C 1.38737 * 120.21911 * 0.25273 * 9 8 7 11 11 N 1.38854 * 120.16498 * 179.75204 * 10 9 8 12 12 C 1.41565 * 119.67183 * 359.51755 * 10 9 8 13 13 C 1.41026 * 120.26910 * 180.20880 * 12 10 9 14 14 H 1.08009 * 119.99799 * 329.55628 * 13 12 10 15 15 C 1.39882 * 120.00379 * 149.56543 * 13 12 10 16 16 N 1.30900 * 120.00226 * 162.48173 * 15 13 12 17 17 Si 1.86800 * 119.99741 * 342.47359 * 15 13 12 18 18 H 1.48497 * 109.46955 * 95.35442 * 17 15 13 19 19 H 1.48498 * 109.47083 * 215.35539 * 17 15 13 20 20 H 1.48500 * 109.47118 * 335.35505 * 17 15 13 21 21 C 1.38000 * 119.84368 * 180.02562 * 7 5 4 22 22 H 1.08997 * 109.47196 * 59.99694 * 1 2 3 23 23 H 1.09001 * 109.47038 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46743 * 299.99695 * 1 2 3 25 25 H 1.09003 * 109.47424 * 240.00043 * 2 1 3 26 26 H 1.08996 * 109.47207 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47245 * 300.00276 * 3 2 1 28 28 H 1.09005 * 109.46637 * 60.00177 * 3 2 1 29 29 H 1.08994 * 109.46944 * 305.00099 * 4 2 1 30 30 H 1.09003 * 109.47313 * 184.99785 * 4 2 1 31 31 H 1.09002 * 109.47414 * 269.99748 * 6 5 4 32 32 H 1.08996 * 109.47442 * 30.00282 * 6 5 4 33 33 H 1.09002 * 109.47187 * 150.00098 * 6 5 4 34 34 H 1.08005 * 119.71906 * 359.97400 * 8 7 5 35 35 H 1.08000 * 119.88860 * 179.97438 * 9 8 7 36 36 H 0.97009 * 120.00046 * 354.54268 * 11 10 9 37 37 H 0.97005 * 120.00382 * 174.54930 * 11 10 9 38 38 H 0.97000 * 120.00489 * 180.02562 * 16 15 13 39 39 H 1.08005 * 120.11620 * 359.97438 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1905 6 6 0.3746 -2.5660 1.7612 7 6 2.5024 -3.0669 0.5897 8 6 3.7196 -2.6507 0.0473 9 6 4.5700 -3.5603 -0.5487 10 6 4.2199 -4.9009 -0.6196 11 7 5.0737 -5.8140 -1.2240 12 6 2.9901 -5.3342 -0.0683 13 6 2.6237 -6.6946 -0.1295 14 1 2.9588 -7.3076 -0.9532 15 6 1.8261 -7.2501 0.8765 16 7 1.2043 -8.3830 0.6681 17 14 1.6484 -6.3753 2.5174 18 1 0.4190 -5.5426 2.5038 19 1 1.5537 -7.3803 3.6064 20 1 2.8315 -5.5075 2.7463 21 6 2.1338 -4.3957 0.5357 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.6054 -0.2618 2.1369 30 1 3.1264 -0.6444 1.2952 31 1 0.5171 -2.8372 2.8073 32 1 -0.3484 -1.7533 1.6918 33 1 0.0043 -3.4298 1.2092 34 1 3.9982 -1.6083 0.0945 35 1 5.5088 -3.2264 -0.9652 36 1 5.8792 -5.5048 -1.6675 37 1 4.8648 -6.7610 -1.2029 38 1 0.6509 -8.7681 1.3655 39 1 1.1915 -4.7143 0.9567 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166377817.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:27 Heat of formation + Delta-G solvation = 18.500147 kcal Electronic energy + Delta-G solvation = -18569.796355 eV Core-core repulsion = 15897.607235 eV Total energy + Delta-G solvation = -2672.189120 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.67527 -36.87963 -34.26735 -33.38564 -31.94629 -30.35452 -27.75290 -27.33918 -26.68871 -24.59927 -23.25433 -21.22864 -20.20569 -19.04069 -17.23690 -16.51157 -15.79114 -15.09048 -14.98885 -14.68227 -14.46004 -13.87908 -13.29819 -12.96957 -12.86207 -12.56937 -12.15817 -12.11902 -12.00367 -11.73199 -11.60975 -11.28125 -11.17351 -10.94072 -10.68156 -10.58245 -10.53771 -10.36582 -9.82808 -9.61687 -9.45276 -8.98660 -7.73457 -7.46316 -6.78065 -5.73649 -4.17718 2.79033 3.04441 3.21570 3.38455 3.46354 3.96413 4.13521 4.70335 5.05077 5.10991 5.25878 5.30944 5.58680 5.61788 5.63481 5.72111 5.82921 5.87669 5.92420 6.04501 6.08233 6.15263 6.24978 6.29875 6.41743 6.48606 6.54909 6.78778 6.88390 7.10088 7.33183 7.45944 7.56302 7.73882 8.00571 8.32149 8.36349 8.61674 8.63833 8.92483 9.10402 9.16738 10.25356 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.022954 B = 0.008038 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.539636 B = 3482.656688 C = 4323.758364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C -0.143 4.143 4 C 0.140 3.860 5 N -0.641 5.641 6 C 0.097 3.903 7 C 0.198 3.802 8 C -0.254 4.254 9 C -0.143 4.143 10 C 0.097 3.903 11 N -0.886 5.886 12 C 0.079 3.921 13 C -0.451 4.451 14 H 0.086 0.914 15 C 0.085 3.915 16 N -0.824 5.824 17 Si 0.911 3.089 18 H -0.273 1.273 19 H -0.298 1.298 20 H -0.246 1.246 21 C -0.272 4.272 22 H 0.046 0.954 23 H 0.062 0.938 24 H 0.047 0.953 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.031 0.969 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.376 0.624 37 H 0.393 0.607 38 H 0.280 0.720 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.150 12.516 1.273 12.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.139 4.139 3 C -0.201 4.201 4 C 0.015 3.985 5 N -0.357 5.357 6 C -0.047 4.047 7 C 0.101 3.899 8 C -0.278 4.278 9 C -0.168 4.168 10 C -0.005 4.005 11 N -0.428 5.428 12 C 0.074 3.926 13 C -0.481 4.481 14 H 0.104 0.896 15 C -0.131 4.131 16 N -0.450 5.450 17 Si 0.739 3.261 18 H -0.200 1.200 19 H -0.227 1.227 20 H -0.169 1.169 21 C -0.295 4.295 22 H 0.066 0.934 23 H 0.081 0.919 24 H 0.066 0.934 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.201 0.799 37 H 0.221 0.779 38 H 0.091 0.909 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.162 12.389 1.438 12.473 hybrid contribution -0.056 0.019 0.572 0.575 sum -0.217 12.407 2.010 12.571 Atomic orbital electron populations 1.21886 0.95688 1.02029 1.00594 1.21642 0.96044 0.95623 1.00632 1.21772 1.00900 0.96179 1.01229 1.21224 0.99860 0.81547 0.95851 1.46119 1.19368 1.04981 1.65223 1.21578 0.85837 1.00043 0.97252 1.17363 0.89899 0.88273 0.94381 1.19668 0.96537 0.97648 1.13929 1.19795 0.99195 0.91801 1.05975 1.17753 0.91319 0.89052 1.02347 1.41858 1.26705 1.08228 1.66031 1.17166 0.89191 0.93415 0.92860 1.19087 1.26744 0.94083 1.08194 0.89589 1.26032 0.91836 0.94451 1.00824 1.69734 1.22399 1.18221 1.34606 0.86303 0.80834 0.78555 0.80387 1.19983 1.22652 1.16901 1.20331 1.01544 0.91100 1.16574 0.93447 0.91922 0.93434 0.90508 0.92764 0.92985 0.93090 0.92465 0.91087 0.95096 0.92433 0.91617 0.88891 0.89190 0.79855 0.77874 0.90940 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.18 37.16 0.30 -1.52 16 2 C -0.12 -1.60 3.13 -90.62 -0.28 -1.89 16 3 C -0.14 -1.55 9.19 37.16 0.34 -1.20 16 4 C 0.14 2.09 4.64 -4.04 -0.02 2.08 16 5 N -0.64 -11.96 2.84 -179.63 -0.51 -12.47 16 6 C 0.10 1.66 9.25 59.85 0.55 2.22 16 7 C 0.20 4.41 6.55 -83.78 -0.55 3.86 16 8 C -0.25 -5.42 9.20 -39.14 -0.36 -5.79 16 9 C -0.14 -3.10 9.87 -39.46 -0.39 -3.49 16 10 C 0.10 2.27 6.79 -83.23 -0.56 1.70 16 11 N -0.89 -17.76 8.97 32.75 0.29 -17.46 16 12 C 0.08 2.04 5.10 -106.65 -0.54 1.50 16 13 C -0.45 -12.25 8.87 -37.91 -0.34 -12.59 16 14 H 0.09 2.41 7.11 -52.48 -0.37 2.03 16 15 C 0.08 2.28 5.41 -17.33 -0.09 2.19 16 16 N -0.82 -22.51 13.93 55.54 0.77 -21.74 16 17 Si 0.91 21.79 24.52 -169.99 -4.17 17.62 16 18 H -0.27 -6.26 6.72 56.52 0.38 -5.88 16 19 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.25 -6.15 6.85 56.52 0.39 -5.76 16 21 C -0.27 -6.70 6.30 -38.75 -0.24 -6.95 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.89 5.89 -51.93 -0.31 0.58 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 30 H 0.07 1.09 6.18 -51.93 -0.32 0.77 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.81 5.98 -51.93 -0.31 0.50 16 33 H 0.07 1.24 6.18 -51.93 -0.32 0.92 16 34 H 0.09 1.77 6.11 -52.48 -0.32 1.45 16 35 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 36 H 0.38 6.28 8.84 -40.82 -0.36 5.92 16 37 H 0.39 7.96 7.19 -40.82 -0.29 7.67 16 38 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 39 H 0.10 2.55 2.84 -52.48 -0.15 2.40 16 LS Contribution 301.14 15.07 4.54 4.54 Total: -1.00 -28.57 301.14 -6.98 -35.56 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -5.73 Total: 13.82 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -2.18 Total: -19.87 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.56 Total: -51.67 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.17 Total: 17.62 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.57 -6.98 -35.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166377817.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.056 kcal (2) G-P(sol) polarization free energy of solvation -28.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds