Wall clock time and date at job start Mon Mar 30 2020 06:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47302 * 2 1 4 4 C 1.53003 * 109.47211 * 120.00113 * 2 1 3 5 5 N 1.46498 * 109.47048 * 65.00085 * 4 2 1 6 6 C 1.46501 * 119.99871 * 269.99917 * 5 4 2 7 7 C 1.39848 * 120.00286 * 89.99854 * 5 4 2 8 8 C 1.39607 * 119.84002 * 0.02562 * 7 5 4 9 9 C 1.38056 * 120.55344 * 179.97438 * 8 7 5 10 10 C 1.38737 * 120.21911 * 0.25273 * 9 8 7 11 11 N 1.38854 * 120.16498 * 179.75204 * 10 9 8 12 12 C 1.41565 * 119.67183 * 359.51755 * 10 9 8 13 13 C 1.41026 * 120.26910 * 180.20880 * 12 10 9 14 14 H 1.08009 * 119.99799 * 329.55628 * 13 12 10 15 15 C 1.39882 * 120.00379 * 149.56543 * 13 12 10 16 16 N 1.30900 * 120.00226 * 162.48173 * 15 13 12 17 17 Si 1.86800 * 119.99741 * 342.47359 * 15 13 12 18 18 H 1.48497 * 109.46955 * 95.35442 * 17 15 13 19 19 H 1.48498 * 109.47083 * 215.35539 * 17 15 13 20 20 H 1.48500 * 109.47118 * 335.35505 * 17 15 13 21 21 C 1.38000 * 119.84368 * 180.02562 * 7 5 4 22 22 H 1.08997 * 109.47196 * 59.99694 * 1 2 3 23 23 H 1.09001 * 109.47038 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46743 * 299.99695 * 1 2 3 25 25 H 1.09003 * 109.47424 * 240.00043 * 2 1 3 26 26 H 1.08996 * 109.47207 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47245 * 300.00276 * 3 2 1 28 28 H 1.09005 * 109.46637 * 60.00177 * 3 2 1 29 29 H 1.08994 * 109.46944 * 305.00099 * 4 2 1 30 30 H 1.09003 * 109.47313 * 184.99785 * 4 2 1 31 31 H 1.09002 * 109.47414 * 269.99748 * 6 5 4 32 32 H 1.08996 * 109.47442 * 30.00282 * 6 5 4 33 33 H 1.09002 * 109.47187 * 150.00098 * 6 5 4 34 34 H 1.08005 * 119.71906 * 359.97400 * 8 7 5 35 35 H 1.08000 * 119.88860 * 179.97438 * 9 8 7 36 36 H 0.97009 * 120.00046 * 354.54268 * 11 10 9 37 37 H 0.97005 * 120.00382 * 174.54930 * 11 10 9 38 38 H 0.97000 * 120.00489 * 180.02562 * 16 15 13 39 39 H 1.08005 * 120.11620 * 359.97438 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1905 6 6 0.3746 -2.5660 1.7612 7 6 2.5024 -3.0669 0.5897 8 6 3.7196 -2.6507 0.0473 9 6 4.5700 -3.5603 -0.5487 10 6 4.2199 -4.9009 -0.6196 11 7 5.0737 -5.8140 -1.2240 12 6 2.9901 -5.3342 -0.0683 13 6 2.6237 -6.6946 -0.1295 14 1 2.9588 -7.3076 -0.9532 15 6 1.8261 -7.2501 0.8765 16 7 1.2043 -8.3830 0.6681 17 14 1.6484 -6.3753 2.5174 18 1 0.4190 -5.5426 2.5038 19 1 1.5537 -7.3803 3.6064 20 1 2.8315 -5.5075 2.7463 21 6 2.1338 -4.3957 0.5357 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.6054 -0.2618 2.1369 30 1 3.1264 -0.6444 1.2952 31 1 0.5171 -2.8372 2.8073 32 1 -0.3484 -1.7533 1.6918 33 1 0.0043 -3.4298 1.2092 34 1 3.9982 -1.6083 0.0945 35 1 5.5088 -3.2264 -0.9652 36 1 5.8792 -5.5048 -1.6675 37 1 4.8648 -6.7610 -1.2029 38 1 0.6509 -8.7681 1.3655 39 1 1.1915 -4.7143 0.9567 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166377817.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:27 Heat of formation + Delta-G solvation = 1.015174 kcal Electronic energy + Delta-G solvation = -18570.554560 eV Core-core repulsion = 15897.607235 eV Total energy + Delta-G solvation = -2672.947326 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.29514 -38.34078 -35.61800 -35.31111 -33.50093 -32.21121 -29.06743 -28.91620 -27.72475 -26.40896 -24.72949 -23.02881 -21.44430 -20.60320 -19.08080 -18.20925 -17.45556 -16.70897 -16.48206 -16.12818 -15.88673 -15.17861 -15.07382 -14.69314 -14.21819 -13.86327 -13.76568 -13.55325 -13.33889 -13.19946 -12.94029 -12.79067 -12.58853 -12.54331 -12.35319 -12.10877 -11.76821 -11.64337 -11.47817 -11.29394 -11.20225 -10.87265 -9.36116 -9.26700 -8.77497 -7.43301 -6.14915 0.92921 1.20199 1.27563 1.51934 1.53453 2.19343 2.55386 2.76920 3.68589 3.72409 4.00328 4.10095 4.21509 4.30875 4.45294 4.60184 4.61121 4.66565 4.79493 4.83372 4.86021 4.96540 5.00511 5.07630 5.10040 5.14396 5.31926 5.33546 5.47574 5.50532 5.52439 5.72044 5.81501 5.97357 6.21694 6.35718 6.64323 6.85105 6.93705 7.01082 7.31427 7.58919 8.31426 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.022954 B = 0.008038 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.539636 B = 3482.656688 C = 4323.758364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.137 4.137 4 C 0.134 3.866 5 N -0.643 5.643 6 C 0.094 3.906 7 C 0.189 3.811 8 C -0.241 4.241 9 C -0.143 4.143 10 C 0.082 3.918 11 N -0.878 5.878 12 C 0.047 3.953 13 C -0.474 4.474 14 H 0.061 0.939 15 C 0.049 3.951 16 N -0.865 5.865 17 Si 0.962 3.038 18 H -0.262 1.262 19 H -0.289 1.289 20 H -0.263 1.263 21 C -0.281 4.281 22 H 0.055 0.945 23 H 0.042 0.958 24 H 0.066 0.934 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.032 0.968 32 H 0.091 0.909 33 H 0.041 0.959 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.394 0.606 37 H 0.390 0.610 38 H 0.286 0.714 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.569 15.971 2.039 16.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 C -0.195 4.195 4 C 0.012 3.988 5 N -0.358 5.358 6 C -0.050 4.050 7 C 0.089 3.911 8 C -0.265 4.265 9 C -0.167 4.167 10 C -0.021 4.021 11 N -0.421 5.421 12 C 0.042 3.958 13 C -0.505 4.505 14 H 0.079 0.921 15 C -0.163 4.163 16 N -0.493 5.493 17 Si 0.789 3.211 18 H -0.188 1.188 19 H -0.217 1.217 20 H -0.188 1.188 21 C -0.305 4.305 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.109 0.891 33 H 0.060 0.940 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.222 0.778 37 H 0.218 0.782 38 H 0.096 0.904 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.262 15.879 2.198 16.033 hybrid contribution -0.106 -0.822 0.255 0.867 sum 0.155 15.057 2.453 15.256 Atomic orbital electron populations 1.21866 0.95059 1.01122 1.02002 1.21557 0.96577 0.96868 0.98481 1.21719 1.01093 0.94247 1.02414 1.21490 1.00132 0.79537 0.97680 1.46325 1.19151 1.05951 1.64360 1.21662 0.86036 1.00542 0.96710 1.17509 0.90897 0.88184 0.94496 1.20099 0.95654 0.99045 1.11686 1.20197 1.00384 0.90998 1.05141 1.17972 0.91195 0.90393 1.02514 1.41774 1.26920 1.07746 1.65685 1.17354 0.90731 0.93040 0.94683 1.19078 1.28310 0.94909 1.08242 0.92121 1.26578 0.91772 0.94996 1.02954 1.69767 1.24186 1.19659 1.35718 0.85524 0.80260 0.77623 0.77733 1.18769 1.21679 1.18768 1.20431 1.01215 0.92359 1.16522 0.92605 0.93916 0.91551 0.93226 0.92457 0.92233 0.91519 0.90030 0.91136 0.94912 0.89069 0.93997 0.86020 0.86029 0.77815 0.78232 0.90369 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.18 71.98 0.59 -2.56 16 2 C -0.11 -2.71 3.13 -10.79 -0.03 -2.74 16 3 C -0.14 -2.40 9.19 71.98 0.66 -1.74 16 4 C 0.13 3.54 4.64 86.38 0.40 3.94 16 5 N -0.64 -22.50 2.84 -722.22 -2.05 -24.55 16 6 C 0.09 3.06 9.25 127.77 1.18 4.24 16 7 C 0.19 8.12 6.55 38.14 0.25 8.37 16 8 C -0.24 -9.64 9.20 22.56 0.21 -9.43 16 9 C -0.14 -5.84 9.87 22.35 0.22 -5.62 16 10 C 0.08 3.80 6.79 38.97 0.26 4.06 16 11 N -0.88 -34.94 8.97 -50.31 -0.45 -35.39 16 12 C 0.05 2.49 5.10 -21.18 -0.11 2.38 16 13 C -0.47 -26.89 8.87 23.35 0.21 -26.68 16 14 H 0.06 3.61 7.11 -2.91 -0.02 3.59 16 15 C 0.05 2.72 5.41 85.23 0.46 3.18 16 16 N -0.86 -49.20 13.93 21.82 0.30 -48.89 16 17 Si 0.96 46.02 24.52 68.60 1.68 47.70 16 18 H -0.26 -11.82 6.72 99.48 0.67 -11.16 16 19 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 20 H -0.26 -13.18 6.85 99.48 0.68 -12.50 16 21 C -0.28 -13.92 6.30 22.81 0.14 -13.78 16 22 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.04 1.10 5.89 -2.39 -0.01 1.09 16 24 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.08 1.79 8.07 -2.39 -0.02 1.78 16 30 H 0.07 1.87 6.18 -2.39 -0.01 1.86 16 31 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 2.31 5.98 -2.39 -0.01 2.30 16 33 H 0.04 1.56 6.18 -2.39 -0.01 1.54 16 34 H 0.12 4.14 6.11 -2.91 -0.02 4.12 16 35 H 0.12 4.17 8.06 -2.91 -0.02 4.14 16 36 H 0.39 12.59 8.84 -92.70 -0.82 11.77 16 37 H 0.39 16.20 7.19 -92.70 -0.67 15.53 16 38 H 0.29 14.87 8.30 -92.71 -0.77 14.10 16 39 H 0.09 4.73 2.84 -2.91 -0.01 4.72 16 Total: -1.00 -62.93 301.14 3.45 -59.47 By element: Atomic # 1 Polarization: 38.53 SS G_CDS: -0.48 Total: 38.05 kcal Atomic # 6 Polarization: -40.84 SS G_CDS: 4.45 Total: -36.39 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -2.20 Total: -108.83 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.68 Total: 47.70 kcal Total: -62.93 3.45 -59.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166377817.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.490 kcal (2) G-P(sol) polarization free energy of solvation -62.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds