Wall clock time and date at job start Mon Mar 30 2020 06:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47218 * 2 1 4 4 H 1.09001 * 109.46845 * 54.99701 * 3 2 1 5 5 C 1.52991 * 109.47254 * 175.00133 * 3 2 1 6 6 N 1.46499 * 109.46859 * 295.00399 * 3 2 1 7 7 C 1.46506 * 120.00063 * 305.10017 * 6 3 2 8 8 C 1.39859 * 120.00154 * 125.10867 * 6 3 2 9 9 C 1.39592 * 119.83909 * 6.04889 * 8 6 3 10 10 C 1.38065 * 120.55031 * 179.97438 * 9 8 6 11 11 C 1.38729 * 120.21601 * 359.78520 * 10 9 8 12 12 N 1.38865 * 120.16172 * 180.25958 * 11 10 9 13 13 C 1.41560 * 119.67565 * 0.48494 * 11 10 9 14 14 C 1.41033 * 120.26678 * 179.76790 * 13 11 10 15 15 H 1.07997 * 119.99985 * 324.89265 * 14 13 11 16 16 C 1.39887 * 119.99894 * 145.16986 * 14 13 11 17 17 N 1.30902 * 120.00037 * 3.60646 * 16 14 13 18 18 Si 1.86799 * 120.00069 * 183.61188 * 16 14 13 19 19 H 1.48506 * 109.46974 * 59.99290 * 18 16 14 20 20 H 1.48497 * 109.47343 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47058 * 299.99875 * 18 16 14 22 22 C 1.38004 * 119.83774 * 186.07639 * 8 6 3 23 23 H 1.08998 * 109.46933 * 300.00354 * 1 2 3 24 24 H 1.08998 * 109.47376 * 59.99605 * 1 2 3 25 25 H 1.08992 * 109.47035 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47143 * 240.00343 * 2 1 3 27 27 H 1.08997 * 109.47140 * 119.99903 * 2 1 3 28 28 H 1.09000 * 109.47394 * 180.02562 * 5 3 2 29 29 H 1.09005 * 109.47262 * 300.00061 * 5 3 2 30 30 H 1.09001 * 109.47548 * 59.99997 * 5 3 2 31 31 H 1.08999 * 109.46927 * 270.00620 * 7 6 3 32 32 H 1.08995 * 109.46677 * 30.00347 * 7 6 3 33 33 H 1.09000 * 109.47201 * 150.00381 * 7 6 3 34 34 H 1.07999 * 119.73017 * 0.02562 * 9 8 6 35 35 H 1.08005 * 119.88816 * 180.02562 * 10 9 8 36 36 H 0.97005 * 120.00379 * 175.14585 * 12 11 10 37 37 H 0.97002 * 120.00471 * 355.14239 * 12 11 10 38 38 H 0.97000 * 119.99802 * 185.00953 * 17 16 14 39 39 H 1.08000 * 120.11721 * 359.96906 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 7 1.6524 2.0975 -1.2518 7 6 2.0193 1.4972 -2.5368 8 6 0.9322 3.2960 -1.2201 9 6 0.6938 3.9310 -0.0001 10 6 -0.0150 5.1149 0.0482 11 6 -0.4951 5.6893 -1.1198 12 7 -1.2032 6.8828 -1.0705 13 6 -0.2637 5.0503 -2.3616 14 6 -0.7504 5.6206 -3.5561 15 1 -1.6947 6.1448 -3.5587 16 6 -0.0128 5.5025 -4.7388 17 7 1.0935 4.8029 -4.7531 18 14 -0.6064 6.3432 -6.2977 19 1 -0.6871 7.8084 -6.0699 20 1 0.3459 6.0661 -7.4030 21 1 -1.9498 5.8239 -6.6594 22 6 0.4602 3.8447 -2.3951 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9281 2.4720 0.1261 29 1 3.8532 0.9570 1.0571 30 1 3.9995 0.9054 -0.7161 31 1 2.9912 1.8776 -2.8512 32 1 2.0704 0.4137 -2.4302 33 1 1.2693 1.7536 -3.2850 34 1 1.0676 3.4931 0.9137 35 1 -0.1929 5.5973 0.9980 36 1 -1.4769 7.3188 -1.8927 37 1 -1.4243 7.2806 -0.2139 38 1 1.6427 4.7803 -5.5523 39 1 0.6466 3.3505 -3.3372 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166377921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:48 Heat of formation + Delta-G solvation = 8.275525 kcal Electronic energy + Delta-G solvation = -18605.683465 eV Core-core repulsion = 15933.050972 eV Total energy + Delta-G solvation = -2672.632493 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.12298 -38.29792 -35.27441 -34.91679 -32.87579 -31.35752 -30.70592 -28.67425 -27.52103 -25.75539 -24.35033 -22.81501 -21.78399 -20.35343 -19.00893 -17.71207 -17.32629 -16.80688 -16.33543 -15.77926 -15.61198 -14.94017 -14.52422 -14.35381 -14.08173 -14.01344 -13.87273 -13.47082 -13.18316 -12.99850 -12.80860 -12.76047 -12.67453 -12.40192 -12.02678 -11.98332 -11.79127 -11.63689 -11.39378 -11.21758 -11.02253 -10.82393 -9.18892 -8.95194 -8.32872 -7.18714 -6.03864 1.17590 1.41641 1.51051 1.53437 1.66523 2.31020 2.69941 2.99077 3.78209 3.90697 3.96087 4.24046 4.30473 4.41993 4.54172 4.67625 4.75457 4.80711 4.83088 4.87007 5.00367 5.05994 5.10501 5.13665 5.29410 5.33647 5.40738 5.43611 5.51172 5.55370 5.68138 5.96057 6.13579 6.19427 6.39842 6.62338 6.95471 7.11010 7.14893 7.24452 7.50080 7.68713 8.60979 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023318 B = 0.007263 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.476317 B = 3854.330055 C = 4552.478108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C 0.144 3.856 4 H 0.079 0.921 5 C -0.155 4.155 6 N -0.634 5.634 7 C 0.112 3.888 8 C 0.168 3.832 9 C -0.248 4.248 10 C -0.164 4.164 11 C 0.076 3.924 12 N -0.879 5.879 13 C 0.046 3.954 14 C -0.490 4.490 15 H 0.069 0.931 16 C 0.026 3.974 17 N -0.846 5.846 18 Si 0.977 3.023 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.265 1.265 22 C -0.212 4.212 23 H 0.047 0.953 24 H 0.029 0.971 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.036 0.964 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.024 0.976 32 H 0.078 0.922 33 H 0.042 0.958 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.390 0.610 37 H 0.390 0.610 38 H 0.274 0.726 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.686 -6.425 6.256 9.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.164 4.164 3 C 0.040 3.960 4 H 0.097 0.903 5 C -0.213 4.213 6 N -0.350 5.350 7 C -0.032 4.032 8 C 0.070 3.930 9 C -0.271 4.271 10 C -0.188 4.188 11 C -0.026 4.026 12 N -0.422 5.422 13 C 0.041 3.959 14 C -0.522 4.522 15 H 0.087 0.913 16 C -0.184 4.184 17 N -0.475 5.475 18 Si 0.800 3.200 19 H -0.189 1.189 20 H -0.202 1.202 21 H -0.190 1.190 22 C -0.237 4.237 23 H 0.066 0.934 24 H 0.048 0.952 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.096 0.904 33 H 0.060 0.940 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.218 0.782 37 H 0.217 0.783 38 H 0.084 0.916 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.953 -6.750 6.057 9.277 hybrid contribution -0.287 0.951 -0.947 1.372 sum 1.666 -5.799 5.110 7.907 Atomic orbital electron populations 1.21630 0.96320 1.01138 1.00899 1.21883 0.95824 0.95781 1.02948 1.21080 0.94644 0.93388 0.86855 0.90314 1.22131 0.95520 1.01140 1.02512 1.46223 1.61133 1.23046 1.04617 1.21265 0.98377 0.97632 0.85884 1.17709 0.94251 0.87351 0.93714 1.20061 1.12033 0.99842 0.95212 1.20062 1.05040 0.98290 0.95429 1.18135 1.00851 0.89752 0.93860 1.41695 1.66203 1.24998 1.09350 1.17439 0.95301 0.91619 0.91510 1.19313 1.06574 1.33016 0.93306 0.91316 1.26537 0.94728 0.94694 1.02437 1.69942 1.12876 1.34555 1.30114 0.85325 0.78582 0.79172 0.76906 1.18880 1.20191 1.19007 1.20992 1.08488 0.97916 0.96285 0.93352 0.95191 0.91697 0.91614 0.89132 0.94479 0.89840 0.92625 0.95758 0.90398 0.93973 0.87148 0.87164 0.78217 0.78253 0.91581 0.86535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 9.80 71.98 0.71 -3.16 16 2 C -0.13 -3.08 5.28 30.60 0.16 -2.92 16 3 C 0.14 4.35 2.55 44.99 0.11 4.46 16 4 H 0.08 2.50 5.37 -2.39 -0.01 2.48 16 5 C -0.15 -4.04 9.27 71.98 0.67 -3.37 16 6 N -0.63 -24.58 2.35 -698.10 -1.64 -26.23 16 7 C 0.11 4.13 9.57 127.77 1.22 5.35 16 8 C 0.17 7.98 6.53 38.13 0.25 8.23 16 9 C -0.25 -11.10 9.26 22.56 0.21 -10.89 16 10 C -0.16 -7.41 9.87 22.35 0.22 -7.19 16 11 C 0.08 3.74 6.79 38.96 0.26 4.00 16 12 N -0.88 -35.99 8.97 -50.31 -0.45 -36.44 16 13 C 0.05 2.56 5.56 -21.18 -0.12 2.44 16 14 C -0.49 -26.72 8.23 23.35 0.19 -26.53 16 15 H 0.07 3.58 7.08 -2.91 -0.02 3.56 16 16 C 0.03 1.37 5.41 85.23 0.46 1.83 16 17 N -0.85 -46.11 10.61 21.82 0.23 -45.88 16 18 Si 0.98 40.35 29.57 68.60 2.03 42.38 16 19 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 20 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 21 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 22 C -0.21 -11.49 7.86 22.81 0.18 -11.31 16 23 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.03 1.00 7.75 -2.39 -0.02 0.98 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.07 1.56 6.29 -2.39 -0.02 1.54 16 27 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.05 1.40 7.80 -2.39 -0.02 1.38 16 31 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 2.30 6.08 -2.39 -0.01 2.29 16 33 H 0.04 1.78 5.97 -2.39 -0.01 1.77 16 34 H 0.11 4.35 5.81 -2.91 -0.02 4.33 16 35 H 0.11 4.30 8.06 -2.91 -0.02 4.27 16 36 H 0.39 15.90 7.28 -92.70 -0.67 15.23 16 37 H 0.39 13.14 8.84 -92.71 -0.82 12.32 16 38 H 0.27 13.90 8.30 -92.71 -0.77 13.13 16 39 H 0.12 6.64 4.08 -2.91 -0.01 6.63 16 Total: -1.00 -61.72 306.37 4.27 -57.46 By element: Atomic # 1 Polarization: 48.20 SS G_CDS: -0.43 Total: 47.77 kcal Atomic # 6 Polarization: -43.58 SS G_CDS: 4.53 Total: -39.06 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -1.86 Total: -108.55 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -61.72 4.27 -57.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166377921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.732 kcal (2) G-P(sol) polarization free energy of solvation -61.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds