Wall clock time and date at job start Mon Mar 30 2020 06:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46913 * 2 1 4 4 H 1.09005 * 109.46955 * 304.99510 * 3 2 1 5 5 C 1.52997 * 109.46952 * 184.99945 * 3 2 1 6 6 N 1.46498 * 109.47389 * 64.99720 * 3 2 1 7 7 C 1.46503 * 119.99648 * 65.45460 * 6 3 2 8 8 C 1.39848 * 120.00291 * 245.45245 * 6 3 2 9 9 C 1.39608 * 119.83654 * 5.81528 * 8 6 3 10 10 C 1.38055 * 120.54592 * 179.97438 * 9 8 6 11 11 C 1.38737 * 120.22418 * 0.02562 * 10 9 8 12 12 N 1.38863 * 120.16563 * 179.97438 * 11 10 9 13 13 C 1.41565 * 119.67315 * 0.02562 * 11 10 9 14 14 C 1.41029 * 120.26875 * 180.02562 * 13 11 10 15 15 H 1.07993 * 119.99962 * 26.50999 * 14 13 11 16 16 C 1.39890 * 119.99918 * 206.50826 * 14 13 11 17 17 N 1.30897 * 119.99838 * 13.84416 * 16 14 13 18 18 Si 1.86793 * 120.00062 * 193.84377 * 16 14 13 19 19 H 1.48498 * 109.47036 * 89.99740 * 18 16 14 20 20 H 1.48499 * 109.47249 * 210.00150 * 18 16 14 21 21 H 1.48503 * 109.47019 * 330.00167 * 18 16 14 22 22 C 1.38006 * 119.84107 * 185.54222 * 8 6 3 23 23 H 1.08999 * 109.46742 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47422 * 300.00140 * 1 2 3 25 25 H 1.09000 * 109.47049 * 60.00209 * 1 2 3 26 26 H 1.09000 * 109.47049 * 119.99791 * 2 1 3 27 27 H 1.09001 * 109.47067 * 239.99456 * 2 1 3 28 28 H 1.08995 * 109.47506 * 179.97438 * 5 3 2 29 29 H 1.09005 * 109.47299 * 299.99980 * 5 3 2 30 30 H 1.09001 * 109.47400 * 59.99867 * 5 3 2 31 31 H 1.08996 * 109.47482 * 90.00090 * 7 6 3 32 32 H 1.09005 * 109.46646 * 209.99848 * 7 6 3 33 33 H 1.09002 * 109.47324 * 329.99544 * 7 6 3 34 34 H 1.07994 * 119.72590 * 359.97438 * 9 8 6 35 35 H 1.07997 * 119.89046 * 180.02562 * 10 9 8 36 36 H 0.97001 * 120.00225 * 5.82929 * 12 11 10 37 37 H 0.97001 * 119.99980 * 185.82829 * 12 11 10 38 38 H 0.97006 * 120.00191 * 184.97566 * 17 16 14 39 39 H 1.08001 * 120.11399 * 359.97438 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1257 6 7 1.6524 2.0976 1.2517 7 6 2.2091 1.6327 2.5246 8 6 0.7510 3.1666 1.2316 9 6 0.1295 3.5287 0.0351 10 6 -0.7631 4.5813 -0.0014 11 6 -1.0520 5.2923 1.1543 12 7 -1.9496 6.3512 1.1161 13 6 -0.4264 4.9339 2.3726 14 6 -0.7113 5.6477 3.5550 15 1 -1.6604 6.1506 3.6667 16 6 0.2356 5.7044 4.5831 17 7 1.4714 5.3376 4.3557 18 14 -0.2634 6.3036 6.2805 19 1 -0.7173 5.1505 7.0988 20 1 0.8998 6.9505 6.9389 21 1 -1.3697 7.2861 6.1531 22 6 0.4758 3.8548 2.3957 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.9281 2.4720 -0.1262 29 1 3.9994 0.9053 0.7161 30 1 3.8532 0.9570 -1.0571 31 1 3.1298 2.1754 2.7384 32 1 1.4886 1.8109 3.3230 33 1 2.4229 0.5658 2.4597 34 1 0.3489 2.9810 -0.8694 35 1 -1.2380 4.8521 -0.9328 36 1 -2.4399 6.5423 0.3012 37 1 -2.0864 6.8997 1.9043 38 1 2.1106 5.3080 5.0848 39 1 0.9548 3.5687 3.3205 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166378053.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:51 Heat of formation + Delta-G solvation = 6.331393 kcal Electronic energy + Delta-G solvation = -18634.960585 eV Core-core repulsion = 15962.243787 eV Total energy + Delta-G solvation = -2672.716797 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.13039 -38.28655 -35.33049 -34.87474 -32.97648 -31.30437 -30.70093 -28.65962 -27.56243 -25.78615 -24.28380 -22.85631 -21.78159 -20.36436 -19.00039 -17.71886 -17.31775 -16.78981 -16.37655 -15.76741 -15.69270 -14.91563 -14.47976 -14.31039 -14.10550 -14.08874 -13.78906 -13.46944 -13.23713 -13.00037 -12.85182 -12.78863 -12.63018 -12.42297 -12.02346 -11.95936 -11.82442 -11.64554 -11.42328 -11.18556 -10.93180 -10.87765 -9.18448 -9.07657 -8.45293 -7.18505 -5.98456 1.14404 1.41014 1.51921 1.53638 1.67692 2.28620 2.69586 2.94960 3.78831 3.93519 3.99767 4.25468 4.29843 4.42564 4.55582 4.66756 4.75192 4.78194 4.82898 4.88554 4.98719 5.04486 5.11585 5.14637 5.27970 5.34979 5.40064 5.42630 5.51192 5.53216 5.66631 5.96148 6.11998 6.18064 6.36087 6.61548 6.94275 7.08750 7.13895 7.23810 7.50402 7.69100 8.54517 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.022766 B = 0.007462 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.630224 B = 3751.216788 C = 4516.158526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.144 3.856 4 H 0.078 0.922 5 C -0.154 4.154 6 N -0.635 5.635 7 C 0.116 3.884 8 C 0.176 3.824 9 C -0.253 4.253 10 C -0.158 4.158 11 C 0.066 3.934 12 N -0.880 5.880 13 C 0.056 3.944 14 C -0.491 4.491 15 H 0.071 0.929 16 C 0.033 3.967 17 N -0.835 5.835 18 Si 0.971 3.029 19 H -0.269 1.269 20 H -0.276 1.276 21 H -0.259 1.259 22 C -0.224 4.224 23 H 0.061 0.939 24 H 0.029 0.971 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.036 0.964 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.024 0.976 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.390 0.610 37 H 0.389 0.611 38 H 0.278 0.722 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.215 -7.605 -5.375 9.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.164 4.164 3 C 0.040 3.960 4 H 0.096 0.904 5 C -0.212 4.212 6 N -0.351 5.351 7 C -0.028 4.028 8 C 0.077 3.923 9 C -0.276 4.276 10 C -0.182 4.182 11 C -0.036 4.036 12 N -0.424 5.424 13 C 0.051 3.949 14 C -0.522 4.522 15 H 0.089 0.911 16 C -0.179 4.179 17 N -0.463 5.463 18 Si 0.794 3.206 19 H -0.194 1.194 20 H -0.201 1.201 21 H -0.183 1.183 22 C -0.248 4.248 23 H 0.080 0.920 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.217 0.783 37 H 0.217 0.783 38 H 0.088 0.912 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.613 -7.727 -5.265 9.488 hybrid contribution -0.313 0.820 0.988 1.321 sum 1.299 -6.907 -4.277 8.227 Atomic orbital electron populations 1.21623 0.96323 1.00939 1.00955 1.21894 0.95848 0.95977 1.02685 1.21078 0.94799 0.93278 0.86812 0.90421 1.22109 0.95087 1.01228 1.02760 1.46240 1.48609 1.34838 1.05399 1.21211 0.96898 0.98671 0.86044 1.17644 0.91618 0.89136 0.93927 1.19991 1.06929 1.04690 0.95999 1.20061 1.03124 0.99472 0.95545 1.18055 0.98620 0.93456 0.93428 1.41676 1.49132 1.35169 1.16438 1.17419 0.93646 0.92356 0.91470 1.19375 1.01434 1.30562 1.00867 0.91126 1.26510 0.93755 0.94056 1.03542 1.69960 1.03396 1.39199 1.33773 0.85368 0.78608 0.78977 0.77691 1.19407 1.20137 1.18315 1.20699 1.08121 0.99364 0.96624 0.91958 0.95197 0.93273 0.91930 0.89320 0.94431 0.92298 0.89730 0.95738 0.94281 0.90413 0.87192 0.87279 0.78290 0.78333 0.91220 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.80 71.98 0.71 -3.18 16 2 C -0.13 -3.09 5.42 30.60 0.17 -2.93 16 3 C 0.14 4.35 2.54 44.99 0.11 4.47 16 4 H 0.08 2.49 5.38 -2.38 -0.01 2.47 16 5 C -0.15 -3.96 9.11 71.98 0.66 -3.30 16 6 N -0.64 -24.51 2.35 -698.08 -1.64 -26.16 16 7 C 0.12 4.19 8.91 127.77 1.14 5.33 16 8 C 0.18 8.28 6.52 38.14 0.25 8.53 16 9 C -0.25 -11.26 9.26 22.56 0.21 -11.05 16 10 C -0.16 -7.15 9.87 22.35 0.22 -6.93 16 11 C 0.07 3.26 6.79 38.97 0.26 3.53 16 12 N -0.88 -36.28 8.97 -50.31 -0.45 -36.73 16 13 C 0.06 3.10 5.57 -21.18 -0.12 2.98 16 14 C -0.49 -26.74 8.44 23.35 0.20 -26.55 16 15 H 0.07 3.67 6.79 -2.91 -0.02 3.65 16 16 C 0.03 1.74 5.20 85.23 0.44 2.18 16 17 N -0.84 -45.42 10.87 21.82 0.24 -45.18 16 18 Si 0.97 39.98 29.58 68.60 2.03 42.01 16 19 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 20 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 21 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 22 C -0.22 -12.07 7.77 22.81 0.18 -11.89 16 23 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.03 1.02 7.74 -2.39 -0.02 1.00 16 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 1.50 6.74 -2.39 -0.02 1.49 16 27 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 1.44 7.53 -2.38 -0.02 1.42 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.04 1.59 6.43 -2.38 -0.02 1.57 16 33 H 0.08 2.24 6.63 -2.39 -0.02 2.23 16 34 H 0.11 4.32 5.81 -2.91 -0.02 4.31 16 35 H 0.11 4.28 8.06 -2.91 -0.02 4.25 16 36 H 0.39 13.25 8.84 -92.71 -0.82 12.43 16 37 H 0.39 15.97 7.12 -92.71 -0.66 15.31 16 38 H 0.28 13.91 8.31 -92.70 -0.77 13.14 16 39 H 0.11 6.03 4.39 -2.91 -0.01 6.01 16 Total: -1.00 -61.76 306.90 4.18 -57.58 By element: Atomic # 1 Polarization: 47.71 SS G_CDS: -0.41 Total: 47.30 kcal Atomic # 6 Polarization: -43.24 SS G_CDS: 4.42 Total: -38.81 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -1.86 Total: -108.07 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -61.76 4.18 -57.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166378053.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.908 kcal (2) G-P(sol) polarization free energy of solvation -61.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds