Wall clock time and date at job start Mon Mar 30 2020 06:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47180 * 2 1 4 4 C 1.52994 * 109.47421 * 239.99316 * 2 1 3 5 5 C 1.53003 * 109.47057 * 119.99633 * 2 1 3 6 6 N 1.46508 * 109.47263 * 59.99717 * 5 2 1 7 7 C 1.39849 * 120.00227 * 179.97438 * 6 5 2 8 8 C 1.39604 * 119.83976 * 0.30085 * 7 6 5 9 9 C 1.38053 * 120.55082 * 180.25613 * 8 7 6 10 10 C 1.38739 * 120.21987 * 359.44657 * 9 8 7 11 11 N 1.38866 * 120.16493 * 180.25768 * 10 9 8 12 12 C 1.41566 * 119.67109 * 0.27248 * 10 9 8 13 13 C 1.41024 * 120.26857 * 180.02562 * 12 10 9 14 14 H 1.07999 * 119.99807 * 333.63198 * 13 12 10 15 15 C 1.39884 * 120.00054 * 153.62151 * 13 12 10 16 16 N 1.30895 * 120.00173 * 343.99519 * 15 13 12 17 17 Si 1.86803 * 119.99694 * 163.99075 * 15 13 12 18 18 H 1.48495 * 109.47046 * 60.00596 * 17 15 13 19 19 H 1.48502 * 109.46681 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47380 * 300.00153 * 17 15 13 21 21 C 1.37998 * 119.84044 * 180.02562 * 7 6 5 22 22 H 1.08998 * 109.46647 * 300.00277 * 1 2 3 23 23 H 1.08994 * 109.46773 * 60.00529 * 1 2 3 24 24 H 1.08998 * 109.47067 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47056 * 179.97438 * 3 2 1 26 26 H 1.08994 * 109.46836 * 299.99432 * 3 2 1 27 27 H 1.08998 * 109.47183 * 59.99599 * 3 2 1 28 28 H 1.09001 * 109.47435 * 300.00558 * 4 2 1 29 29 H 1.09008 * 109.46925 * 60.00284 * 4 2 1 30 30 H 1.08995 * 109.47529 * 180.02562 * 4 2 1 31 31 H 1.08998 * 109.47096 * 300.00272 * 5 2 1 32 32 H 1.09000 * 109.47514 * 180.02562 * 5 2 1 33 33 H 0.97005 * 119.99573 * 0.02562 * 6 5 2 34 34 H 1.08005 * 119.72575 * 359.97438 * 8 7 6 35 35 H 1.08001 * 119.89216 * 179.72573 * 9 8 7 36 36 H 0.97001 * 120.00257 * 359.97438 * 11 10 9 37 37 H 0.97001 * 119.99599 * 179.97438 * 11 10 9 38 38 H 0.97004 * 120.00145 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.11467 * 0.05242 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 2.0400 -0.7212 1.2493 6 7 1.5516 -2.1025 1.2495 7 6 1.8899 -2.9637 2.2981 8 6 2.6880 -2.5019 3.3463 9 6 3.0351 -3.3409 4.3862 10 6 2.5834 -4.6525 4.4058 11 7 2.9289 -5.4939 5.4551 12 6 1.7687 -5.1289 3.3506 13 6 1.3021 -6.4597 3.3581 14 1 1.8591 -7.2243 3.8791 15 6 0.1177 -6.7894 2.6908 16 7 -0.7158 -5.8460 2.3321 17 14 -0.2745 -8.5760 2.3117 18 1 -0.3507 -9.3458 3.5792 19 1 -1.5773 -8.6572 1.6035 20 1 0.7929 -9.1451 1.4502 21 6 1.4284 -4.2642 2.2946 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.1301 1.4425 0.0005 26 1 1.6768 1.9562 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6767 -1.7490 -1.2491 29 1 1.6768 -0.2075 -2.1392 30 1 3.1301 -0.7218 -1.2489 31 1 1.6767 -0.2073 2.1392 32 1 3.1300 -0.7208 1.2496 33 1 0.9942 -2.4198 0.5218 34 1 3.0405 -1.4810 3.3414 35 1 3.6567 -2.9737 5.1895 36 1 3.4877 -5.1652 6.1767 37 1 2.6113 -6.4104 5.4666 38 1 -1.5370 -6.0745 1.8691 39 1 0.8082 -4.6170 1.4838 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166380579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:37 Heat of formation + Delta-G solvation = 3.769182 kcal Electronic energy + Delta-G solvation = -18096.450520 eV Core-core repulsion = 15423.622617 eV Total energy + Delta-G solvation = -2672.827903 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.38249 -37.25165 -34.24959 -33.40422 -31.17840 -29.37219 -27.25043 -27.11393 -27.06502 -24.78418 -24.14405 -21.12116 -19.64505 -18.63225 -17.03874 -16.12721 -15.42561 -15.13503 -14.74535 -14.58766 -14.44649 -13.61737 -13.29672 -13.00781 -12.63574 -12.37480 -12.12316 -11.93469 -11.83838 -11.58281 -11.56395 -11.28731 -11.05172 -10.97833 -10.68354 -10.64985 -10.42796 -10.30987 -9.81468 -9.64553 -9.27453 -9.01371 -7.69165 -7.17449 -6.57684 -5.47419 -4.02905 2.95480 3.14303 3.17378 3.34925 3.53195 4.06055 4.52043 4.85377 4.91130 4.95601 5.09144 5.46483 5.59239 5.67478 5.68402 5.86709 5.91689 5.95366 5.97155 6.04290 6.20423 6.23553 6.32157 6.41548 6.49047 6.52204 6.68733 7.16725 7.20460 7.35819 7.54122 7.75561 7.93139 8.04879 8.17125 8.50325 8.81005 8.95418 8.99361 9.04692 9.30057 9.38740 10.41438 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.022533 B = 0.006216 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.297641 B = 4503.768228 C = 5482.580424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.081 4.081 3 C -0.137 4.137 4 C -0.139 4.139 5 C 0.151 3.849 6 N -0.760 5.760 7 C 0.178 3.822 8 C -0.255 4.255 9 C -0.153 4.153 10 C 0.083 3.917 11 N -0.889 5.889 12 C 0.096 3.904 13 C -0.466 4.466 14 H 0.070 0.930 15 C 0.077 3.923 16 N -0.801 5.801 17 Si 0.901 3.099 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.267 1.267 21 C -0.201 4.201 22 H 0.054 0.946 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.387 0.613 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.374 0.626 37 H 0.388 0.612 38 H 0.275 0.725 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.328 7.870 -4.276 9.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.082 4.082 3 C -0.195 4.195 4 C -0.196 4.196 5 C 0.025 3.975 6 N -0.396 5.396 7 C 0.079 3.921 8 C -0.279 4.279 9 C -0.177 4.177 10 C -0.017 4.017 11 N -0.432 5.432 12 C 0.091 3.909 13 C -0.497 4.497 14 H 0.088 0.912 15 C -0.139 4.139 16 N -0.428 5.428 17 Si 0.727 3.273 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.192 1.192 21 C -0.225 4.225 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.221 0.779 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.198 0.802 37 H 0.216 0.784 38 H 0.085 0.915 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.150 8.106 -4.398 9.469 hybrid contribution -0.419 -1.077 -0.098 1.160 sum 1.730 7.029 -4.496 8.522 Atomic orbital electron populations 1.21838 0.94362 1.02283 1.01158 1.20776 0.96093 0.95457 0.95840 1.21800 1.00954 0.95171 1.01597 1.21836 1.00978 1.00512 0.96270 1.21011 0.97355 0.83708 0.95444 1.44384 1.59819 1.09548 1.25847 1.17521 0.96266 0.90097 0.88186 1.19610 1.11204 0.98394 0.98678 1.19703 1.05430 0.93092 0.99479 1.17864 1.03150 0.90119 0.90602 1.41802 1.61596 1.14310 1.25479 1.16959 0.91391 0.93393 0.89203 1.19087 1.06142 0.94244 1.30213 0.91203 1.25730 0.95505 0.98626 0.94000 1.69874 1.08249 1.34035 1.30630 0.86501 0.77982 0.83519 0.79345 1.19386 1.20652 1.19197 1.20467 1.08989 0.91818 1.01254 0.92682 0.93171 0.92121 0.92634 0.92712 0.92609 0.92239 0.93140 0.92713 0.93776 0.93795 0.77912 0.89799 0.89867 0.80156 0.78376 0.91466 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.30 37.16 0.31 -1.46 16 2 C -0.08 -1.04 0.78 -154.51 -0.12 -1.16 16 3 C -0.14 -1.47 8.47 37.16 0.31 -1.15 16 4 C -0.14 -1.71 8.30 37.15 0.31 -1.40 16 5 C 0.15 2.43 3.80 -4.04 -0.02 2.41 16 6 N -0.76 -14.81 5.14 -58.63 -0.30 -15.11 16 7 C 0.18 4.23 6.64 -83.78 -0.56 3.67 16 8 C -0.25 -5.94 9.31 -39.14 -0.36 -6.31 16 9 C -0.15 -3.59 9.86 -39.46 -0.39 -3.98 16 10 C 0.08 2.07 6.79 -83.22 -0.56 1.50 16 11 N -0.89 -18.58 8.98 32.75 0.29 -18.29 16 12 C 0.10 2.58 5.57 -106.66 -0.59 1.99 16 13 C -0.47 -12.39 8.48 -37.91 -0.32 -12.71 16 14 H 0.07 1.77 6.71 -52.49 -0.35 1.41 16 15 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 16 N -0.80 -21.19 10.97 55.54 0.61 -20.58 16 17 Si 0.90 19.15 29.59 -169.99 -5.03 14.12 16 18 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 C -0.20 -5.29 8.49 -38.75 -0.33 -5.62 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.85 6.86 -51.93 -0.36 0.50 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.80 6.86 -51.93 -0.36 0.45 16 29 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.75 7.93 -51.93 -0.41 0.33 16 32 H 0.04 0.73 7.95 -51.93 -0.41 0.31 16 33 H 0.39 7.27 6.17 -40.82 -0.25 7.02 16 34 H 0.08 1.79 6.69 -52.48 -0.35 1.44 16 35 H 0.08 1.75 8.06 -52.49 -0.42 1.32 16 36 H 0.37 6.62 8.83 -40.82 -0.36 6.26 16 37 H 0.39 7.95 7.06 -40.82 -0.29 7.67 16 38 H 0.27 6.71 8.30 -40.82 -0.34 6.37 16 39 H 0.12 3.16 6.23 -52.49 -0.33 2.84 16 LS Contribution 310.59 15.07 4.68 4.68 Total: -1.00 -28.23 310.59 -8.14 -36.38 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: -5.98 Total: 21.13 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -2.41 Total: -22.34 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.60 Total: -53.97 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.23 -8.14 -36.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166380579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.148 kcal (2) G-P(sol) polarization free energy of solvation -28.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds