Wall clock time and date at job start Mon Mar 30 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47180 * 2 1 4 4 C 1.52994 * 109.47421 * 239.99316 * 2 1 3 5 5 C 1.53003 * 109.47057 * 119.99633 * 2 1 3 6 6 N 1.46508 * 109.47263 * 59.99717 * 5 2 1 7 7 C 1.39849 * 120.00227 * 179.97438 * 6 5 2 8 8 C 1.39604 * 119.83976 * 0.30085 * 7 6 5 9 9 C 1.38053 * 120.55082 * 180.25613 * 8 7 6 10 10 C 1.38739 * 120.21987 * 359.44657 * 9 8 7 11 11 N 1.38866 * 120.16493 * 180.25768 * 10 9 8 12 12 C 1.41566 * 119.67109 * 0.27248 * 10 9 8 13 13 C 1.41024 * 120.26857 * 180.02562 * 12 10 9 14 14 H 1.07999 * 119.99807 * 333.63198 * 13 12 10 15 15 C 1.39884 * 120.00054 * 153.62151 * 13 12 10 16 16 N 1.30895 * 120.00173 * 343.99519 * 15 13 12 17 17 Si 1.86803 * 119.99694 * 163.99075 * 15 13 12 18 18 H 1.48495 * 109.47046 * 60.00596 * 17 15 13 19 19 H 1.48502 * 109.46681 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47380 * 300.00153 * 17 15 13 21 21 C 1.37998 * 119.84044 * 180.02562 * 7 6 5 22 22 H 1.08998 * 109.46647 * 300.00277 * 1 2 3 23 23 H 1.08994 * 109.46773 * 60.00529 * 1 2 3 24 24 H 1.08998 * 109.47067 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47056 * 179.97438 * 3 2 1 26 26 H 1.08994 * 109.46836 * 299.99432 * 3 2 1 27 27 H 1.08998 * 109.47183 * 59.99599 * 3 2 1 28 28 H 1.09001 * 109.47435 * 300.00558 * 4 2 1 29 29 H 1.09008 * 109.46925 * 60.00284 * 4 2 1 30 30 H 1.08995 * 109.47529 * 180.02562 * 4 2 1 31 31 H 1.08998 * 109.47096 * 300.00272 * 5 2 1 32 32 H 1.09000 * 109.47514 * 180.02562 * 5 2 1 33 33 H 0.97005 * 119.99573 * 0.02562 * 6 5 2 34 34 H 1.08005 * 119.72575 * 359.97438 * 8 7 6 35 35 H 1.08001 * 119.89216 * 179.72573 * 9 8 7 36 36 H 0.97001 * 120.00257 * 359.97438 * 11 10 9 37 37 H 0.97001 * 119.99599 * 179.97438 * 11 10 9 38 38 H 0.97004 * 120.00145 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.11467 * 0.05242 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 2.0400 -0.7212 1.2493 6 7 1.5516 -2.1025 1.2495 7 6 1.8899 -2.9637 2.2981 8 6 2.6880 -2.5019 3.3463 9 6 3.0351 -3.3409 4.3862 10 6 2.5834 -4.6525 4.4058 11 7 2.9289 -5.4939 5.4551 12 6 1.7687 -5.1289 3.3506 13 6 1.3021 -6.4597 3.3581 14 1 1.8591 -7.2243 3.8791 15 6 0.1177 -6.7894 2.6908 16 7 -0.7158 -5.8460 2.3321 17 14 -0.2745 -8.5760 2.3117 18 1 -0.3507 -9.3458 3.5792 19 1 -1.5773 -8.6572 1.6035 20 1 0.7929 -9.1451 1.4502 21 6 1.4284 -4.2642 2.2946 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.1301 1.4425 0.0005 26 1 1.6768 1.9562 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6767 -1.7490 -1.2491 29 1 1.6768 -0.2075 -2.1392 30 1 3.1301 -0.7218 -1.2489 31 1 1.6767 -0.2073 2.1392 32 1 3.1300 -0.7208 1.2496 33 1 0.9942 -2.4198 0.5218 34 1 3.0405 -1.4810 3.3414 35 1 3.6567 -2.9737 5.1895 36 1 3.4877 -5.1652 6.1767 37 1 2.6113 -6.4104 5.4666 38 1 -1.5370 -6.0745 1.8691 39 1 0.8082 -4.6170 1.4838 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166380579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:36 Heat of formation + Delta-G solvation = -12.677104 kcal Electronic energy + Delta-G solvation = -18097.163684 eV Core-core repulsion = 15423.622617 eV Total energy + Delta-G solvation = -2673.541067 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.94906 -38.72508 -35.87116 -35.29095 -32.81064 -31.29467 -28.74843 -28.18498 -28.12465 -26.65526 -25.65011 -22.98885 -21.45184 -19.79812 -18.89390 -17.80969 -17.23623 -16.76770 -16.43747 -15.95828 -15.73416 -14.97001 -14.52950 -14.33080 -14.22569 -14.13490 -13.69890 -13.52165 -13.12875 -12.97055 -12.90177 -12.72206 -12.66176 -12.53324 -12.11147 -11.87652 -11.74932 -11.64279 -11.40719 -11.28596 -11.13206 -10.91646 -9.37559 -9.12294 -8.48717 -7.27081 -5.99540 1.14190 1.41261 1.50484 1.53622 1.67382 2.27869 2.92278 3.03837 3.77877 3.83494 3.91143 3.99994 4.03718 4.54376 4.60856 4.68362 4.75255 4.85534 4.88950 4.90723 4.92650 5.04491 5.09466 5.19395 5.24738 5.30962 5.36630 5.42837 5.47924 5.50555 5.69717 5.90731 6.07672 6.18299 6.30446 6.58321 6.98709 7.07920 7.15417 7.29425 7.49145 7.68099 8.52201 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.022533 B = 0.006216 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.297641 B = 4503.768228 C = 5482.580424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.075 4.075 3 C -0.133 4.133 4 C -0.137 4.137 5 C 0.149 3.851 6 N -0.755 5.755 7 C 0.174 3.826 8 C -0.260 4.260 9 C -0.158 4.158 10 C 0.068 3.932 11 N -0.879 5.879 12 C 0.061 3.939 13 C -0.494 4.494 14 H 0.074 0.926 15 C 0.034 3.966 16 N -0.834 5.834 17 Si 0.974 3.026 18 H -0.260 1.260 19 H -0.275 1.275 20 H -0.266 1.266 21 C -0.226 4.226 22 H 0.051 0.949 23 H 0.071 0.929 24 H 0.039 0.961 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.039 0.961 32 H 0.043 0.957 33 H 0.388 0.612 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.390 0.610 37 H 0.390 0.610 38 H 0.279 0.721 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.754 8.685 -4.597 10.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.075 4.075 3 C -0.191 4.191 4 C -0.194 4.194 5 C 0.024 3.976 6 N -0.390 5.390 7 C 0.073 3.927 8 C -0.284 4.284 9 C -0.182 4.182 10 C -0.034 4.034 11 N -0.423 5.423 12 C 0.056 3.944 13 C -0.525 4.525 14 H 0.092 0.908 15 C -0.179 4.179 16 N -0.461 5.461 17 Si 0.797 3.203 18 H -0.185 1.185 19 H -0.200 1.200 20 H -0.190 1.190 21 C -0.251 4.251 22 H 0.070 0.930 23 H 0.090 0.910 24 H 0.058 0.942 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.222 0.778 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.218 0.782 37 H 0.218 0.782 38 H 0.089 0.911 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.593 8.948 -4.708 10.438 hybrid contribution -0.515 -1.220 0.011 1.324 sum 2.079 7.728 -4.697 9.279 Atomic orbital electron populations 1.21825 0.94333 1.01212 1.02110 1.20749 0.96042 0.96556 0.94192 1.21772 1.01297 0.93345 1.02671 1.21822 1.00994 0.99656 0.96943 1.21194 0.97266 0.81961 0.97191 1.44469 1.59338 1.10454 1.24689 1.17647 0.95805 0.89913 0.89337 1.19913 1.10727 0.99394 0.98342 1.20048 1.05284 0.92670 1.00191 1.18038 1.03136 0.91154 0.91094 1.41670 1.61541 1.13990 1.25096 1.17360 0.92633 0.94100 0.90284 1.19360 1.06987 0.94565 1.31611 0.90806 1.26561 0.94987 1.02992 0.93349 1.69963 1.08723 1.36190 1.31251 0.85377 0.77764 0.77912 0.79285 1.18475 1.19971 1.19048 1.20434 1.10099 0.93292 1.01242 0.92991 0.90966 0.94183 0.92119 0.90879 0.92341 0.94063 0.91011 0.92658 0.94324 0.93862 0.77786 0.87731 0.87182 0.78224 0.78229 0.91099 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.30 71.98 0.60 -2.72 16 2 C -0.08 -1.79 0.78 -52.18 -0.04 -1.83 16 3 C -0.13 -2.47 8.47 71.98 0.61 -1.86 16 4 C -0.14 -3.16 8.30 71.98 0.60 -2.56 16 5 C 0.15 4.66 3.80 86.38 0.33 4.98 16 6 N -0.75 -29.67 5.14 -339.42 -1.74 -31.41 16 7 C 0.17 8.36 6.64 38.13 0.25 8.62 16 8 C -0.26 -11.94 9.31 22.56 0.21 -11.73 16 9 C -0.16 -7.25 9.86 22.35 0.22 -7.03 16 10 C 0.07 3.35 6.79 38.97 0.26 3.62 16 11 N -0.88 -36.19 8.98 -50.30 -0.45 -36.64 16 12 C 0.06 3.39 5.57 -21.18 -0.12 3.28 16 13 C -0.49 -26.87 8.48 23.35 0.20 -26.67 16 14 H 0.07 3.79 6.71 -2.91 -0.02 3.77 16 15 C 0.03 1.76 5.16 85.23 0.44 2.19 16 16 N -0.83 -45.36 10.97 21.82 0.24 -45.12 16 17 Si 0.97 39.68 29.59 68.60 2.03 41.71 16 18 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 19 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 20 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 21 C -0.23 -12.32 8.49 22.81 0.19 -12.13 16 22 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.04 1.12 6.86 -2.39 -0.02 1.10 16 25 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.04 1.09 6.86 -2.39 -0.02 1.08 16 29 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.04 1.26 7.93 -2.39 -0.02 1.24 16 32 H 0.04 1.37 7.95 -2.39 -0.02 1.35 16 33 H 0.39 14.98 6.17 -92.70 -0.57 14.41 16 34 H 0.10 4.29 6.69 -2.91 -0.02 4.27 16 35 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 36 H 0.39 13.26 8.83 -92.71 -0.82 12.44 16 37 H 0.39 15.86 7.06 -92.71 -0.65 15.21 16 38 H 0.28 13.96 8.30 -92.71 -0.77 13.19 16 39 H 0.10 5.48 6.23 -2.91 -0.02 5.47 16 Total: -1.00 -61.34 310.59 2.85 -58.49 By element: Atomic # 1 Polarization: 57.79 SS G_CDS: -0.98 Total: 56.81 kcal Atomic # 6 Polarization: -47.60 SS G_CDS: 3.75 Total: -43.85 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -1.96 Total: -113.17 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -61.34 2.85 -58.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166380579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.817 kcal (2) G-P(sol) polarization free energy of solvation -61.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds