Wall clock time and date at job start Mon Mar 30 2020 06:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46973 * 2 1 4 4 H 1.08992 * 109.46981 * 304.99725 * 3 2 1 5 5 C 1.52999 * 109.47260 * 65.00001 * 3 2 1 6 6 C 1.53006 * 109.47008 * 184.99744 * 3 2 1 7 7 N 1.46501 * 109.47102 * 174.99839 * 6 3 2 8 8 C 1.39850 * 119.99892 * 179.97438 * 7 6 3 9 9 C 1.39603 * 119.84175 * 359.73757 * 8 7 6 10 10 C 1.38060 * 120.54838 * 179.71558 * 9 8 7 11 11 C 1.38731 * 120.22226 * 0.55092 * 10 9 8 12 12 N 1.38863 * 120.16560 * 179.74992 * 11 10 9 13 13 C 1.41566 * 119.67194 * 359.72333 * 11 10 9 14 14 C 1.41024 * 120.26619 * 179.97438 * 13 11 10 15 15 H 1.07995 * 120.00354 * 25.56331 * 14 13 11 16 16 C 1.39893 * 119.99804 * 205.57578 * 14 13 11 17 17 N 1.30897 * 119.99921 * 15.34005 * 16 14 13 18 18 Si 1.86799 * 120.00088 * 195.34254 * 16 14 13 19 19 H 1.48498 * 109.46857 * 59.99600 * 18 16 14 20 20 H 1.48490 * 109.47272 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46887 * 299.99993 * 18 16 14 22 22 C 1.38000 * 119.83819 * 179.97438 * 8 7 6 23 23 H 1.08999 * 109.46832 * 60.00268 * 1 2 3 24 24 H 1.08998 * 109.46729 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46756 * 299.99722 * 1 2 3 26 26 H 1.09002 * 109.46936 * 239.99573 * 2 1 3 27 27 H 1.09009 * 109.46923 * 120.00272 * 2 1 3 28 28 H 1.09002 * 109.46895 * 59.99753 * 5 3 2 29 29 H 1.09000 * 109.47281 * 300.00197 * 5 3 2 30 30 H 1.08996 * 109.47439 * 179.97438 * 5 3 2 31 31 H 1.08994 * 109.47344 * 295.00018 * 6 3 2 32 32 H 1.09002 * 109.46768 * 54.99736 * 6 3 2 33 33 H 0.96997 * 119.99609 * 0.02562 * 7 6 3 34 34 H 1.08000 * 119.72118 * 359.97438 * 9 8 7 35 35 H 1.08001 * 119.88658 * 180.27244 * 10 9 8 36 36 H 0.96996 * 120.00000 * 179.97438 * 12 11 10 37 37 H 0.97004 * 119.99546 * 359.97301 * 12 11 10 38 38 H 0.97004 * 120.00326 * 180.02562 * 17 16 14 39 39 H 1.07998 * 120.11570 * 359.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5649 1.4443 -0.1257 7 7 4.0433 2.8238 -0.2458 8 6 5.4121 3.0806 -0.3730 9 6 6.3201 2.0202 -0.3796 10 6 7.6741 2.2566 -0.5102 11 6 8.1483 3.5553 -0.6252 12 7 9.5108 3.7920 -0.7513 13 6 7.2363 4.6379 -0.6138 14 6 7.7047 5.9631 -0.7293 15 1 8.6441 6.1627 -1.2232 16 6 6.9525 7.0191 -0.2039 17 7 5.9857 6.7754 0.6442 18 14 7.3279 8.7769 -0.7125 19 1 7.1606 8.9135 -2.1816 20 1 6.3954 9.7023 -0.0204 21 1 8.7259 9.1121 -0.3401 22 6 5.8591 4.3812 -0.4864 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.0698 1.5875 2.1491 29 1 0.5489 2.1252 1.3969 30 1 1.9989 3.1540 1.3076 31 1 4.0030 0.9836 0.7597 32 1 3.8571 0.8799 -1.0112 33 1 3.4107 3.5590 -0.2363 34 1 5.9601 1.0063 -0.2859 35 1 8.3667 1.4280 -0.5184 36 1 9.8397 4.7009 -0.8319 37 1 10.1336 3.0483 -0.7587 38 1 5.4638 7.5076 1.0083 39 1 5.1540 5.1993 -0.4775 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166382711.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:32 Heat of formation + Delta-G solvation = 0.162767 kcal Electronic energy + Delta-G solvation = -17793.779225 eV Core-core repulsion = 15120.794936 eV Total energy + Delta-G solvation = -2672.984289 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.11962 -36.99410 -34.45087 -33.41959 -31.66001 -29.45068 -29.35271 -27.03559 -25.36851 -24.69239 -22.75533 -21.11326 -19.74252 -19.58408 -17.02455 -16.11514 -15.41903 -15.26408 -15.06574 -14.65892 -14.26539 -14.02168 -13.55889 -12.85828 -12.68802 -12.36806 -12.16112 -11.96103 -11.76841 -11.73120 -11.45399 -11.26647 -11.05397 -10.97853 -10.64121 -10.56063 -10.45224 -10.31951 -9.80957 -9.64647 -9.28697 -9.02295 -7.70045 -7.17876 -6.57344 -5.48244 -4.03276 2.95205 3.14104 3.17108 3.34907 3.52966 4.05668 4.45540 4.85106 4.93844 4.97665 5.08311 5.36171 5.46243 5.55428 5.57970 5.75081 5.90884 5.92653 5.99828 6.02801 6.11432 6.16940 6.25961 6.41273 6.46271 6.54382 6.68645 7.16317 7.20270 7.36211 7.53856 7.75175 7.93249 8.05384 8.16939 8.49982 8.80893 8.95101 8.99126 9.04546 9.29899 9.38436 10.41003 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023944 B = 0.005450 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.134859 B = 5136.604864 C = 6140.255214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.103 4.103 4 H 0.071 0.929 5 C -0.146 4.146 6 C 0.144 3.856 7 N -0.762 5.762 8 C 0.177 3.823 9 C -0.255 4.255 10 C -0.153 4.153 11 C 0.084 3.916 12 N -0.889 5.889 13 C 0.095 3.905 14 C -0.464 4.464 15 H 0.070 0.930 16 C 0.076 3.924 17 N -0.801 5.801 18 Si 0.902 3.098 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.269 1.269 22 C -0.202 4.202 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.387 0.613 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.388 0.612 37 H 0.374 0.626 38 H 0.275 0.725 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.901 -7.112 -0.424 9.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.122 4.122 4 H 0.090 0.910 5 C -0.203 4.203 6 C 0.018 3.982 7 N -0.397 5.397 8 C 0.079 3.921 9 C -0.279 4.279 10 C -0.177 4.177 11 C -0.017 4.017 12 N -0.432 5.432 13 C 0.090 3.910 14 C -0.496 4.496 15 H 0.088 0.912 16 C -0.139 4.139 17 N -0.428 5.428 18 Si 0.727 3.273 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.194 1.194 22 C -0.226 4.226 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.220 0.780 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.216 0.784 37 H 0.199 0.801 38 H 0.085 0.915 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.157 -7.182 -0.250 10.142 hybrid contribution 0.284 1.119 -0.109 1.160 sum -6.873 -6.062 -0.359 9.172 Atomic orbital electron populations 1.21809 0.96022 1.01226 1.01869 1.21497 0.95686 0.96209 1.02078 1.21368 0.95778 0.96278 0.98733 0.91050 1.21855 1.00427 1.01141 0.96907 1.21026 0.91819 0.85661 0.99649 1.44343 1.04710 1.05053 1.85626 1.17530 0.82169 0.93797 0.98637 1.19614 0.92427 0.95356 1.20542 1.19699 0.94517 0.93464 1.10036 1.17857 0.83966 0.93148 1.06758 1.41803 1.04234 1.08786 1.88382 1.16966 0.90279 0.91233 0.92566 1.19102 1.05965 0.90836 1.33655 0.91194 1.25740 0.94294 1.00844 0.93058 1.69871 1.17434 1.33822 1.21703 0.86484 0.78971 0.82056 0.79747 1.19187 1.20631 1.19376 1.20526 0.95594 0.92857 1.13647 0.92868 0.93063 0.92523 0.91947 0.91917 0.92774 0.92973 0.92196 0.93743 0.93842 0.78008 0.89786 0.89849 0.78378 0.80147 0.91458 0.86346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.67 37.16 0.36 -1.04 16 2 C -0.12 -1.24 5.40 -26.73 -0.14 -1.39 16 3 C -0.10 -1.31 2.42 -90.62 -0.22 -1.53 16 4 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 5 C -0.15 -1.83 8.82 37.16 0.33 -1.50 16 6 C 0.14 2.32 4.30 -4.04 -0.02 2.31 16 7 N -0.76 -15.00 5.46 -58.64 -0.32 -15.32 16 8 C 0.18 4.24 6.64 -83.78 -0.56 3.68 16 9 C -0.26 -5.98 9.31 -39.14 -0.36 -6.35 16 10 C -0.15 -3.60 9.86 -39.46 -0.39 -3.99 16 11 C 0.08 2.07 6.79 -83.23 -0.56 1.50 16 12 N -0.89 -18.61 8.98 32.75 0.29 -18.32 16 13 C 0.09 2.56 5.58 -106.65 -0.60 1.97 16 14 C -0.46 -12.38 8.50 -37.91 -0.32 -12.70 16 15 H 0.07 1.77 6.67 -52.49 -0.35 1.42 16 16 C 0.08 1.95 5.18 -17.33 -0.09 1.86 16 17 N -0.80 -21.21 10.88 55.55 0.60 -20.61 16 18 Si 0.90 19.15 29.59 -169.99 -5.03 14.12 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 C -0.20 -5.35 8.50 -38.75 -0.33 -5.68 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.56 6.56 -51.93 -0.34 0.22 16 30 H 0.06 0.83 7.18 -51.93 -0.37 0.46 16 31 H 0.04 0.75 7.93 -51.93 -0.41 0.34 16 32 H 0.04 0.71 7.95 -51.93 -0.41 0.30 16 33 H 0.39 7.30 7.66 -40.82 -0.31 6.99 16 34 H 0.08 1.80 6.69 -52.49 -0.35 1.44 16 35 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.39 7.95 7.04 -40.82 -0.29 7.67 16 37 H 0.37 6.62 8.83 -40.82 -0.36 6.26 16 38 H 0.27 6.71 8.30 -40.82 -0.34 6.37 16 39 H 0.12 3.25 6.14 -52.49 -0.32 2.93 16 LS Contribution 311.64 15.07 4.70 4.70 Total: -1.00 -28.40 311.64 -8.62 -37.02 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: -5.96 Total: 21.25 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -2.91 Total: -22.84 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.58 Total: -54.25 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.40 -8.62 -37.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166382711.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.179 kcal (2) G-P(sol) polarization free energy of solvation -28.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds