Wall clock time and date at job start Mon Mar 30 2020 06:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46973 * 2 1 4 4 H 1.08992 * 109.46981 * 304.99725 * 3 2 1 5 5 C 1.52999 * 109.47260 * 65.00001 * 3 2 1 6 6 C 1.53006 * 109.47008 * 184.99744 * 3 2 1 7 7 N 1.46501 * 109.47102 * 174.99839 * 6 3 2 8 8 C 1.39850 * 119.99892 * 179.97438 * 7 6 3 9 9 C 1.39603 * 119.84175 * 359.73757 * 8 7 6 10 10 C 1.38060 * 120.54838 * 179.71558 * 9 8 7 11 11 C 1.38731 * 120.22226 * 0.55092 * 10 9 8 12 12 N 1.38863 * 120.16560 * 179.74992 * 11 10 9 13 13 C 1.41566 * 119.67194 * 359.72333 * 11 10 9 14 14 C 1.41024 * 120.26619 * 179.97438 * 13 11 10 15 15 H 1.07995 * 120.00354 * 25.56331 * 14 13 11 16 16 C 1.39893 * 119.99804 * 205.57578 * 14 13 11 17 17 N 1.30897 * 119.99921 * 15.34005 * 16 14 13 18 18 Si 1.86799 * 120.00088 * 195.34254 * 16 14 13 19 19 H 1.48498 * 109.46857 * 59.99600 * 18 16 14 20 20 H 1.48490 * 109.47272 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46887 * 299.99993 * 18 16 14 22 22 C 1.38000 * 119.83819 * 179.97438 * 8 7 6 23 23 H 1.08999 * 109.46832 * 60.00268 * 1 2 3 24 24 H 1.08998 * 109.46729 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46756 * 299.99722 * 1 2 3 26 26 H 1.09002 * 109.46936 * 239.99573 * 2 1 3 27 27 H 1.09009 * 109.46923 * 120.00272 * 2 1 3 28 28 H 1.09002 * 109.46895 * 59.99753 * 5 3 2 29 29 H 1.09000 * 109.47281 * 300.00197 * 5 3 2 30 30 H 1.08996 * 109.47439 * 179.97438 * 5 3 2 31 31 H 1.08994 * 109.47344 * 295.00018 * 6 3 2 32 32 H 1.09002 * 109.46768 * 54.99736 * 6 3 2 33 33 H 0.96997 * 119.99609 * 0.02562 * 7 6 3 34 34 H 1.08000 * 119.72118 * 359.97438 * 9 8 7 35 35 H 1.08001 * 119.88658 * 180.27244 * 10 9 8 36 36 H 0.96996 * 120.00000 * 179.97438 * 12 11 10 37 37 H 0.97004 * 119.99546 * 359.97301 * 12 11 10 38 38 H 0.97004 * 120.00326 * 180.02562 * 17 16 14 39 39 H 1.07998 * 120.11570 * 359.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5649 1.4443 -0.1257 7 7 4.0433 2.8238 -0.2458 8 6 5.4121 3.0806 -0.3730 9 6 6.3201 2.0202 -0.3796 10 6 7.6741 2.2566 -0.5102 11 6 8.1483 3.5553 -0.6252 12 7 9.5108 3.7920 -0.7513 13 6 7.2363 4.6379 -0.6138 14 6 7.7047 5.9631 -0.7293 15 1 8.6441 6.1627 -1.2232 16 6 6.9525 7.0191 -0.2039 17 7 5.9857 6.7754 0.6442 18 14 7.3279 8.7769 -0.7125 19 1 7.1606 8.9135 -2.1816 20 1 6.3954 9.7023 -0.0204 21 1 8.7259 9.1121 -0.3401 22 6 5.8591 4.3812 -0.4864 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.0698 1.5875 2.1491 29 1 0.5489 2.1252 1.3969 30 1 1.9989 3.1540 1.3076 31 1 4.0030 0.9836 0.7597 32 1 3.8571 0.8799 -1.0112 33 1 3.4107 3.5590 -0.2363 34 1 5.9601 1.0063 -0.2859 35 1 8.3667 1.4280 -0.5184 36 1 9.8397 4.7009 -0.8319 37 1 10.1336 3.0483 -0.7587 38 1 5.4638 7.5076 1.0083 39 1 5.1540 5.1993 -0.4775 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166382711.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:31 Heat of formation + Delta-G solvation = -16.418751 kcal Electronic energy + Delta-G solvation = -17794.498254 eV Core-core repulsion = 15120.794936 eV Total energy + Delta-G solvation = -2673.703318 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.82651 -38.32889 -35.97415 -35.31225 -33.19058 -31.28981 -30.57888 -28.53490 -26.85740 -26.45801 -23.95639 -22.87747 -21.39292 -20.84846 -18.89179 -17.84500 -17.23220 -16.72522 -16.45258 -16.24400 -15.74641 -15.22166 -14.68492 -14.37416 -14.17462 -14.06714 -13.75041 -13.48598 -13.15466 -12.97148 -12.86416 -12.78865 -12.68431 -12.40520 -12.09387 -11.89481 -11.57213 -11.51026 -11.41292 -11.25888 -11.15061 -10.92458 -9.38898 -9.13100 -8.48370 -7.28551 -6.00017 1.13890 1.41354 1.50635 1.53512 1.67037 2.27761 2.91728 3.00881 3.77694 3.89472 3.95430 4.00907 4.09349 4.48239 4.58694 4.61406 4.69150 4.78651 4.82787 4.86316 4.98498 5.10247 5.16962 5.22078 5.23276 5.24371 5.36461 5.44579 5.51210 5.54282 5.68726 5.90162 6.07602 6.18479 6.29721 6.57868 6.98020 7.07497 7.14723 7.28783 7.48672 7.67684 8.51810 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023944 B = 0.005450 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.134859 B = 5136.604864 C = 6140.255214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.094 4.094 4 H 0.071 0.929 5 C -0.143 4.143 6 C 0.143 3.857 7 N -0.758 5.758 8 C 0.172 3.828 9 C -0.261 4.261 10 C -0.158 4.158 11 C 0.068 3.932 12 N -0.879 5.879 13 C 0.061 3.939 14 C -0.493 4.493 15 H 0.074 0.926 16 C 0.033 3.967 17 N -0.834 5.834 18 Si 0.975 3.025 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.228 4.228 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.388 0.612 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.390 0.610 37 H 0.390 0.610 38 H 0.279 0.721 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.285 -7.857 -0.590 10.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.113 4.113 4 H 0.090 0.910 5 C -0.201 4.201 6 C 0.018 3.982 7 N -0.392 5.392 8 C 0.072 3.928 9 C -0.285 4.285 10 C -0.182 4.182 11 C -0.034 4.034 12 N -0.423 5.423 13 C 0.055 3.945 14 C -0.524 4.524 15 H 0.092 0.908 16 C -0.180 4.180 17 N -0.461 5.461 18 Si 0.797 3.203 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.185 1.185 22 C -0.253 4.253 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.221 0.779 34 H 0.123 0.877 35 H 0.129 0.871 36 H 0.218 0.782 37 H 0.218 0.782 38 H 0.089 0.911 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.539 -7.962 -0.414 10.972 hybrid contribution 0.379 1.237 -0.042 1.295 sum -7.160 -6.724 -0.456 9.833 Atomic orbital electron populations 1.21790 0.94634 1.02193 1.02063 1.21476 0.96830 0.94383 1.02428 1.21311 0.93140 0.98009 0.98815 0.91035 1.21832 1.01756 0.99784 0.96695 1.21204 0.94219 0.83451 0.99304 1.44447 1.03292 1.06786 1.84725 1.17659 0.84162 0.93170 0.97834 1.19921 0.92539 0.96145 1.19850 1.20047 0.95191 0.93857 1.09125 1.18029 0.85227 0.93199 1.06913 1.41673 1.03215 1.09615 1.87813 1.17368 0.91110 0.92382 0.93598 1.19385 1.06789 0.91569 1.34701 0.90755 1.26577 0.93900 1.04932 0.92553 1.69961 1.18390 1.35232 1.22563 0.85360 0.79102 0.76627 0.79162 1.19007 1.19932 1.18471 1.20502 0.95533 0.93477 1.15742 0.92762 0.91762 0.92255 0.91637 0.91591 0.92956 0.90881 0.94181 0.94207 0.93790 0.77853 0.87694 0.87141 0.78215 0.78207 0.91072 0.88328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.67 71.98 0.70 -1.67 16 2 C -0.11 -2.16 5.40 30.59 0.17 -2.00 16 3 C -0.09 -2.26 2.42 -10.79 -0.03 -2.28 16 4 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 5 C -0.14 -3.42 8.82 71.98 0.63 -2.79 16 6 C 0.14 4.48 4.30 86.38 0.37 4.85 16 7 N -0.76 -30.02 5.46 -339.43 -1.85 -31.87 16 8 C 0.17 8.34 6.64 38.13 0.25 8.59 16 9 C -0.26 -12.01 9.31 22.56 0.21 -11.80 16 10 C -0.16 -7.27 9.86 22.35 0.22 -7.05 16 11 C 0.07 3.38 6.79 38.97 0.26 3.65 16 12 N -0.88 -36.16 8.98 -50.31 -0.45 -36.62 16 13 C 0.06 3.35 5.58 -21.18 -0.12 3.23 16 14 C -0.49 -26.83 8.50 23.35 0.20 -26.63 16 15 H 0.07 3.81 6.67 -2.91 -0.02 3.79 16 16 C 0.03 1.71 5.18 85.23 0.44 2.15 16 17 N -0.83 -45.31 10.88 21.82 0.24 -45.07 16 18 Si 0.98 39.60 29.59 68.60 2.03 41.63 16 19 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 20 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 21 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 22 C -0.23 -12.46 8.50 22.81 0.19 -12.27 16 23 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 25 H 0.06 0.91 6.56 -2.39 -0.02 0.89 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 1.43 6.56 -2.39 -0.02 1.42 16 30 H 0.04 1.10 7.18 -2.39 -0.02 1.09 16 31 H 0.04 1.30 7.93 -2.39 -0.02 1.28 16 32 H 0.04 1.39 7.95 -2.39 -0.02 1.37 16 33 H 0.39 14.98 7.66 -92.71 -0.71 14.27 16 34 H 0.11 4.31 6.69 -2.91 -0.02 4.29 16 35 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 36 H 0.39 15.83 7.04 -92.71 -0.65 15.18 16 37 H 0.39 13.24 8.83 -92.70 -0.82 12.42 16 38 H 0.28 13.94 8.30 -92.71 -0.77 13.17 16 39 H 0.10 5.68 6.14 -2.91 -0.02 5.66 16 Total: -1.00 -61.41 311.64 2.35 -59.06 By element: Atomic # 1 Polarization: 58.00 SS G_CDS: -1.11 Total: 56.89 kcal Atomic # 6 Polarization: -47.52 SS G_CDS: 3.51 Total: -44.01 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -2.07 Total: -113.56 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -61.41 2.35 -59.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166382711.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.641 kcal (2) G-P(sol) polarization free energy of solvation -61.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds