Wall clock time and date at job start Mon Mar 30 2020 06:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.46994 * 2 1 4 4 H 1.08998 * 109.47865 * 54.99851 * 3 2 1 5 5 C 1.53006 * 109.46774 * 294.99560 * 3 2 1 6 6 C 1.53003 * 109.47232 * 174.99892 * 3 2 1 7 7 N 1.46501 * 109.47059 * 184.99761 * 6 3 2 8 8 C 1.39853 * 119.99579 * 180.02562 * 7 6 3 9 9 C 1.39604 * 119.84094 * 359.72356 * 8 7 6 10 10 C 1.38059 * 120.54632 * 179.72242 * 9 8 7 11 11 C 1.38734 * 120.22420 * 0.55727 * 10 9 8 12 12 N 1.38856 * 120.16761 * 179.74450 * 11 10 9 13 13 C 1.41568 * 119.67227 * 359.72010 * 11 10 9 14 14 C 1.41020 * 120.27127 * 179.97438 * 13 11 10 15 15 H 1.08005 * 119.99723 * 25.57526 * 14 13 11 16 16 C 1.39880 * 120.00381 * 205.57379 * 14 13 11 17 17 N 1.30903 * 120.00137 * 15.34726 * 16 14 13 18 18 Si 1.86804 * 120.00434 * 195.34539 * 16 14 13 19 19 H 1.48501 * 109.46855 * 89.99961 * 18 16 14 20 20 H 1.48499 * 109.47364 * 210.00524 * 18 16 14 21 21 H 1.48507 * 109.46952 * 330.00458 * 18 16 14 22 22 C 1.38004 * 119.83722 * 180.02562 * 8 7 6 23 23 H 1.09003 * 109.46822 * 60.00853 * 1 2 3 24 24 H 1.09006 * 109.47289 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47727 * 300.00133 * 1 2 3 26 26 H 1.08998 * 109.47529 * 239.99369 * 2 1 3 27 27 H 1.09000 * 109.46693 * 119.99905 * 2 1 3 28 28 H 1.09006 * 109.46971 * 180.02562 * 5 3 2 29 29 H 1.08997 * 109.46887 * 60.00295 * 5 3 2 30 30 H 1.09001 * 109.47170 * 299.99949 * 5 3 2 31 31 H 1.09003 * 109.46733 * 304.99850 * 6 3 2 32 32 H 1.09004 * 109.47156 * 64.99665 * 6 3 2 33 33 H 0.96994 * 120.00539 * 359.97438 * 7 6 3 34 34 H 1.07996 * 119.72436 * 0.02562 * 9 8 7 35 35 H 1.08001 * 119.89386 * 180.27428 * 10 9 8 36 36 H 0.97000 * 120.00352 * 179.97438 * 12 11 10 37 37 H 0.96997 * 120.00112 * 359.97438 * 12 11 10 38 38 H 0.96996 * 120.00238 * 179.97438 * 17 16 14 39 39 H 1.08000 * 120.11743 * 359.97118 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6352 2.1264 -1.3075 6 6 3.5648 1.4443 0.1258 7 7 4.0432 2.8238 0.2458 8 6 5.4120 3.0806 0.3730 9 6 6.3191 2.0196 0.3911 10 6 7.6739 2.2566 0.5103 11 6 8.1482 3.5553 0.6253 12 7 9.5107 3.7921 0.7505 13 6 7.2362 4.6380 0.6139 14 6 7.7044 5.9631 0.7305 15 1 8.7097 6.2097 0.4220 16 6 6.8670 6.9581 1.2456 17 7 5.7776 6.6270 1.8915 18 14 7.3032 8.7594 1.0120 19 1 6.7008 9.2547 -0.2518 20 1 6.7762 9.5486 2.1542 21 1 8.7795 8.9069 0.9477 22 6 5.8590 4.3813 0.4864 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 1.9989 3.1540 -1.3077 29 1 0.5489 2.1251 -1.3970 30 1 2.0699 1.5873 -2.1492 31 1 3.8569 0.8801 1.0114 32 1 4.0030 0.9835 -0.7596 33 1 3.4106 3.5591 0.2362 34 1 5.9583 1.0052 0.3062 35 1 8.3667 1.4281 0.5187 36 1 9.8397 4.7011 0.8304 37 1 10.1335 3.0485 0.7581 38 1 5.1971 7.3170 2.2490 39 1 5.1540 5.1994 0.4765 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166382815.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:34 Heat of formation + Delta-G solvation = 0.109133 kcal Electronic energy + Delta-G solvation = -17786.813221 eV Core-core repulsion = 15113.826607 eV Total energy + Delta-G solvation = -2672.986615 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.12161 -36.99771 -34.45235 -33.42029 -31.66108 -29.45610 -29.35436 -27.04475 -25.37384 -24.69411 -22.75616 -21.11455 -19.74692 -19.58561 -17.02612 -16.12104 -15.42036 -15.27043 -15.06244 -14.65565 -14.26627 -14.03214 -13.56042 -12.88021 -12.66886 -12.35228 -12.19941 -11.97239 -11.79324 -11.73004 -11.42488 -11.29551 -11.03852 -10.99290 -10.62319 -10.59358 -10.44726 -10.31325 -9.79612 -9.65030 -9.28258 -9.03363 -7.70149 -7.17997 -6.57434 -5.48326 -4.03452 2.93743 3.15206 3.17672 3.34506 3.52882 4.05622 4.45465 4.85166 4.93289 4.97130 5.08060 5.35737 5.46196 5.54695 5.57049 5.74882 5.90481 5.92389 5.98452 6.02547 6.09826 6.16282 6.25072 6.41221 6.45134 6.53323 6.68494 7.16327 7.20153 7.36334 7.53750 7.75089 7.93135 8.05317 8.17011 8.50060 8.80841 8.95135 8.99084 9.04477 9.29808 9.38343 10.40972 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023891 B = 0.005423 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.706468 B = 5162.217657 C = 6134.685156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.103 4.103 4 H 0.072 0.928 5 C -0.145 4.145 6 C 0.144 3.856 7 N -0.762 5.762 8 C 0.177 3.823 9 C -0.255 4.255 10 C -0.153 4.153 11 C 0.084 3.916 12 N -0.889 5.889 13 C 0.094 3.906 14 C -0.464 4.464 15 H 0.071 0.929 16 C 0.076 3.924 17 N -0.802 5.802 18 Si 0.902 3.098 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.266 1.266 22 C -0.201 4.201 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.387 0.613 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.388 0.612 37 H 0.374 0.626 38 H 0.274 0.726 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.614 -6.936 -3.005 10.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.122 4.122 4 H 0.090 0.910 5 C -0.203 4.203 6 C 0.019 3.981 7 N -0.397 5.397 8 C 0.078 3.922 9 C -0.279 4.279 10 C -0.177 4.177 11 C -0.017 4.017 12 N -0.432 5.432 13 C 0.089 3.911 14 C -0.495 4.495 15 H 0.089 0.911 16 C -0.140 4.140 17 N -0.429 5.429 18 Si 0.728 3.272 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.190 1.190 22 C -0.226 4.226 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.220 0.780 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.216 0.784 37 H 0.199 0.801 38 H 0.085 0.915 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.887 -7.024 -2.886 10.252 hybrid contribution 0.272 1.122 0.074 1.157 sum -6.615 -5.902 -2.812 9.300 Atomic orbital electron populations 1.21810 0.96019 1.01232 1.01871 1.21492 0.95688 0.96197 1.02083 1.21373 0.95807 0.96304 0.98728 0.90967 1.21854 1.00473 1.01012 0.96936 1.21025 0.91803 0.85671 0.99645 1.44342 1.04696 1.05056 1.85636 1.17533 0.82170 0.93835 0.98616 1.19615 0.92353 0.95333 1.20608 1.19700 0.94509 0.93482 1.10043 1.17857 0.84252 0.92959 1.06631 1.41803 1.04221 1.08815 1.88362 1.16975 0.90508 0.91279 0.92340 1.19141 0.99620 0.92626 1.38114 0.91138 1.25742 0.94501 1.00778 0.92946 1.69882 1.11784 1.34905 1.26282 0.86423 0.79674 0.82652 0.78473 1.19644 1.20639 1.18982 1.20534 0.96077 0.92996 1.12993 0.92545 0.93059 0.92843 0.91938 0.91918 0.92320 0.92943 0.92795 0.93820 0.93761 0.78007 0.89782 0.89845 0.78368 0.80148 0.91515 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.67 37.16 0.36 -1.04 16 2 C -0.12 -1.24 5.40 -26.74 -0.14 -1.39 16 3 C -0.10 -1.31 2.42 -90.62 -0.22 -1.53 16 4 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 5 C -0.15 -1.76 8.82 37.16 0.33 -1.44 16 6 C 0.14 2.33 4.30 -4.04 -0.02 2.31 16 7 N -0.76 -15.01 5.46 -58.63 -0.32 -15.33 16 8 C 0.18 4.24 6.64 -83.77 -0.56 3.68 16 9 C -0.26 -5.97 9.31 -39.14 -0.36 -6.34 16 10 C -0.15 -3.60 9.86 -39.46 -0.39 -3.99 16 11 C 0.08 2.08 6.79 -83.23 -0.56 1.51 16 12 N -0.89 -18.61 8.98 32.75 0.29 -18.32 16 13 C 0.09 2.55 5.58 -106.65 -0.60 1.95 16 14 C -0.46 -12.36 8.50 -37.91 -0.32 -12.69 16 15 H 0.07 1.79 6.67 -52.48 -0.35 1.44 16 16 C 0.08 1.94 5.18 -17.33 -0.09 1.85 16 17 N -0.80 -21.24 10.88 55.54 0.60 -20.64 16 18 Si 0.90 19.17 29.59 -169.99 -5.03 14.15 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 C -0.20 -5.34 8.50 -38.75 -0.33 -5.67 16 23 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.78 7.18 -51.93 -0.37 0.41 16 29 H 0.05 0.55 6.56 -51.93 -0.34 0.21 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.73 7.93 -51.93 -0.41 0.32 16 32 H 0.04 0.73 7.95 -51.93 -0.41 0.32 16 33 H 0.39 7.31 7.66 -40.82 -0.31 7.00 16 34 H 0.08 1.80 6.69 -52.49 -0.35 1.44 16 35 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.39 7.97 7.04 -40.82 -0.29 7.68 16 37 H 0.37 6.63 8.83 -40.82 -0.36 6.26 16 38 H 0.27 6.69 8.30 -40.82 -0.34 6.35 16 39 H 0.12 3.26 6.14 -52.49 -0.32 2.94 16 LS Contribution 311.64 15.07 4.70 4.70 Total: -1.00 -28.43 311.64 -8.62 -37.05 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: -5.96 Total: 21.18 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -2.91 Total: -22.78 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.58 Total: -54.29 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.43 -8.62 -37.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166382815.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.158 kcal (2) G-P(sol) polarization free energy of solvation -28.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds