Wall clock time and date at job start Mon Mar 30 2020 06:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.46994 * 2 1 4 4 H 1.08998 * 109.47865 * 54.99851 * 3 2 1 5 5 C 1.53006 * 109.46774 * 294.99560 * 3 2 1 6 6 C 1.53003 * 109.47232 * 174.99892 * 3 2 1 7 7 N 1.46501 * 109.47059 * 184.99761 * 6 3 2 8 8 C 1.39853 * 119.99579 * 180.02562 * 7 6 3 9 9 C 1.39604 * 119.84094 * 359.72356 * 8 7 6 10 10 C 1.38059 * 120.54632 * 179.72242 * 9 8 7 11 11 C 1.38734 * 120.22420 * 0.55727 * 10 9 8 12 12 N 1.38856 * 120.16761 * 179.74450 * 11 10 9 13 13 C 1.41568 * 119.67227 * 359.72010 * 11 10 9 14 14 C 1.41020 * 120.27127 * 179.97438 * 13 11 10 15 15 H 1.08005 * 119.99723 * 25.57526 * 14 13 11 16 16 C 1.39880 * 120.00381 * 205.57379 * 14 13 11 17 17 N 1.30903 * 120.00137 * 15.34726 * 16 14 13 18 18 Si 1.86804 * 120.00434 * 195.34539 * 16 14 13 19 19 H 1.48501 * 109.46855 * 89.99961 * 18 16 14 20 20 H 1.48499 * 109.47364 * 210.00524 * 18 16 14 21 21 H 1.48507 * 109.46952 * 330.00458 * 18 16 14 22 22 C 1.38004 * 119.83722 * 180.02562 * 8 7 6 23 23 H 1.09003 * 109.46822 * 60.00853 * 1 2 3 24 24 H 1.09006 * 109.47289 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47727 * 300.00133 * 1 2 3 26 26 H 1.08998 * 109.47529 * 239.99369 * 2 1 3 27 27 H 1.09000 * 109.46693 * 119.99905 * 2 1 3 28 28 H 1.09006 * 109.46971 * 180.02562 * 5 3 2 29 29 H 1.08997 * 109.46887 * 60.00295 * 5 3 2 30 30 H 1.09001 * 109.47170 * 299.99949 * 5 3 2 31 31 H 1.09003 * 109.46733 * 304.99850 * 6 3 2 32 32 H 1.09004 * 109.47156 * 64.99665 * 6 3 2 33 33 H 0.96994 * 120.00539 * 359.97438 * 7 6 3 34 34 H 1.07996 * 119.72436 * 0.02562 * 9 8 7 35 35 H 1.08001 * 119.89386 * 180.27428 * 10 9 8 36 36 H 0.97000 * 120.00352 * 179.97438 * 12 11 10 37 37 H 0.96997 * 120.00112 * 359.97438 * 12 11 10 38 38 H 0.96996 * 120.00238 * 179.97438 * 17 16 14 39 39 H 1.08000 * 120.11743 * 359.97118 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6352 2.1264 -1.3075 6 6 3.5648 1.4443 0.1258 7 7 4.0432 2.8238 0.2458 8 6 5.4120 3.0806 0.3730 9 6 6.3191 2.0196 0.3911 10 6 7.6739 2.2566 0.5103 11 6 8.1482 3.5553 0.6253 12 7 9.5107 3.7921 0.7505 13 6 7.2362 4.6380 0.6139 14 6 7.7044 5.9631 0.7305 15 1 8.7097 6.2097 0.4220 16 6 6.8670 6.9581 1.2456 17 7 5.7776 6.6270 1.8915 18 14 7.3032 8.7594 1.0120 19 1 6.7008 9.2547 -0.2518 20 1 6.7762 9.5486 2.1542 21 1 8.7795 8.9069 0.9477 22 6 5.8590 4.3813 0.4864 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 1.9989 3.1540 -1.3077 29 1 0.5489 2.1251 -1.3970 30 1 2.0699 1.5873 -2.1492 31 1 3.8569 0.8801 1.0114 32 1 4.0030 0.9835 -0.7596 33 1 3.4106 3.5591 0.2362 34 1 5.9583 1.0052 0.3062 35 1 8.3667 1.4281 0.5187 36 1 9.8397 4.7011 0.8304 37 1 10.1335 3.0485 0.7581 38 1 5.1971 7.3170 2.2490 39 1 5.1540 5.1994 0.4765 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166382815.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:33 Heat of formation + Delta-G solvation = -16.494491 kcal Electronic energy + Delta-G solvation = -17787.533208 eV Core-core repulsion = 15113.826607 eV Total energy + Delta-G solvation = -2673.706602 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.82771 -38.32949 -35.97516 -35.31364 -33.19213 -31.29083 -30.57957 -28.53330 -26.85759 -26.45927 -23.95804 -22.87885 -21.39464 -20.84875 -18.89409 -17.85059 -17.23423 -16.72680 -16.43252 -16.25709 -15.74973 -15.22580 -14.70548 -14.35274 -14.19360 -14.03947 -13.70504 -13.57563 -13.11075 -13.01042 -12.84784 -12.77069 -12.69904 -12.41581 -12.08591 -11.86816 -11.58563 -11.51947 -11.39104 -11.27070 -11.14149 -10.93906 -9.39007 -9.13259 -8.48575 -7.28658 -6.00251 1.12804 1.41363 1.51943 1.52895 1.66710 2.27589 2.91551 3.00681 3.77598 3.89460 3.95294 4.00896 4.09543 4.48133 4.58530 4.61429 4.69122 4.78939 4.82674 4.85932 4.98848 5.10774 5.16600 5.21856 5.23130 5.24409 5.36350 5.44579 5.51238 5.54227 5.68635 5.90059 6.07555 6.18372 6.29665 6.57855 6.98029 7.07408 7.14622 7.28666 7.48511 7.67570 8.51827 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023891 B = 0.005423 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.706468 B = 5162.217657 C = 6134.685156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.095 4.095 4 H 0.068 0.932 5 C -0.143 4.143 6 C 0.143 3.857 7 N -0.758 5.758 8 C 0.172 3.828 9 C -0.260 4.260 10 C -0.158 4.158 11 C 0.069 3.931 12 N -0.879 5.879 13 C 0.060 3.940 14 C -0.492 4.492 15 H 0.074 0.926 16 C 0.033 3.967 17 N -0.834 5.834 18 Si 0.976 3.024 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.258 1.258 22 C -0.227 4.227 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.039 0.961 32 H 0.044 0.956 33 H 0.388 0.612 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.390 0.610 37 H 0.390 0.610 38 H 0.279 0.721 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.936 -7.656 -3.362 10.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.114 4.114 4 H 0.086 0.914 5 C -0.200 4.200 6 C 0.018 3.982 7 N -0.393 5.393 8 C 0.072 3.928 9 C -0.284 4.284 10 C -0.182 4.182 11 C -0.033 4.033 12 N -0.423 5.423 13 C 0.055 3.945 14 C -0.523 4.523 15 H 0.092 0.908 16 C -0.180 4.180 17 N -0.462 5.462 18 Si 0.798 3.202 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.181 1.181 22 C -0.252 4.252 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.221 0.779 34 H 0.123 0.877 35 H 0.129 0.871 36 H 0.218 0.782 37 H 0.218 0.782 38 H 0.089 0.911 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.208 -7.778 -3.246 11.090 hybrid contribution 0.346 1.231 0.182 1.291 sum -6.862 -6.547 -3.065 9.967 Atomic orbital electron populations 1.21791 0.94647 1.02192 1.02052 1.21472 0.96822 0.94403 1.02423 1.21315 0.93148 0.98008 0.98909 0.91366 1.21831 1.01771 0.99826 0.96565 1.21203 0.94229 0.83436 0.99292 1.44447 1.03279 1.06786 1.84738 1.17662 0.84155 0.93207 0.97823 1.19922 0.92466 0.96121 1.19901 1.20048 0.95181 0.93873 1.09126 1.18029 0.85502 0.93010 1.06789 1.41673 1.03204 1.09637 1.87796 1.17375 0.91361 0.92424 0.93354 1.19410 1.00286 0.93378 1.39251 0.90761 1.26578 0.94208 1.05070 0.92137 1.69968 1.12816 1.36447 1.26991 0.85303 0.79666 0.76868 0.78371 1.19382 1.19969 1.18149 1.20509 0.96017 0.93627 1.15070 0.92110 0.91758 0.92931 0.91378 0.91858 0.94031 0.90940 0.92668 0.94234 0.93765 0.77857 0.87684 0.87130 0.78217 0.78205 0.91089 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.67 71.98 0.70 -1.68 16 2 C -0.11 -2.17 5.40 30.59 0.17 -2.01 16 3 C -0.09 -2.29 2.42 -10.79 -0.03 -2.31 16 4 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 5 C -0.14 -3.27 8.82 71.98 0.64 -2.63 16 6 C 0.14 4.48 4.30 86.38 0.37 4.85 16 7 N -0.76 -30.02 5.46 -339.41 -1.85 -31.88 16 8 C 0.17 8.32 6.64 38.14 0.25 8.58 16 9 C -0.26 -11.98 9.31 22.56 0.21 -11.77 16 10 C -0.16 -7.27 9.86 22.35 0.22 -7.05 16 11 C 0.07 3.40 6.79 38.97 0.26 3.66 16 12 N -0.88 -36.16 8.98 -50.31 -0.45 -36.61 16 13 C 0.06 3.32 5.58 -21.18 -0.12 3.20 16 14 C -0.49 -26.76 8.50 23.35 0.20 -26.56 16 15 H 0.07 3.82 6.67 -2.91 -0.02 3.80 16 16 C 0.03 1.69 5.18 85.23 0.44 2.13 16 17 N -0.83 -45.39 10.88 21.82 0.24 -45.16 16 18 Si 0.98 39.65 29.59 68.60 2.03 41.68 16 19 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 20 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 22 C -0.23 -12.44 8.50 22.81 0.19 -12.25 16 23 H 0.06 0.92 6.56 -2.39 -0.02 0.90 16 24 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.04 1.08 7.18 -2.38 -0.02 1.07 16 29 H 0.07 1.37 6.56 -2.39 -0.02 1.35 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.04 1.28 7.93 -2.39 -0.02 1.26 16 32 H 0.04 1.40 7.95 -2.38 -0.02 1.38 16 33 H 0.39 14.98 7.66 -92.71 -0.71 14.27 16 34 H 0.11 4.31 6.69 -2.91 -0.02 4.29 16 35 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 36 H 0.39 15.85 7.04 -92.71 -0.65 15.20 16 37 H 0.39 13.24 8.83 -92.71 -0.82 12.42 16 38 H 0.28 13.91 8.30 -92.71 -0.77 13.14 16 39 H 0.10 5.68 6.14 -2.91 -0.02 5.67 16 Total: -1.00 -61.43 311.64 2.35 -59.08 By element: Atomic # 1 Polarization: 57.84 SS G_CDS: -1.11 Total: 56.72 kcal Atomic # 6 Polarization: -47.34 SS G_CDS: 3.51 Total: -43.84 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -2.07 Total: -113.65 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -61.43 2.35 -59.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166382815.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.586 kcal (2) G-P(sol) polarization free energy of solvation -61.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds