Wall clock time and date at job start Mon Mar 30 2020 06:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47083 * 2 1 4 4 C 1.50694 * 109.47284 * 120.00308 * 2 1 3 5 5 C 1.39868 * 126.03977 * 299.99983 * 4 2 1 6 6 N 1.30839 * 108.20011 * 179.74054 * 5 4 2 7 7 N 1.40085 * 108.21011 * 0.40372 * 6 5 4 8 8 C 1.46499 * 126.04198 * 179.85672 * 7 6 5 9 9 H 1.09000 * 110.05253 * 333.27216 * 8 7 6 10 10 C 1.54370 * 110.04433 * 211.79932 * 8 7 6 11 11 C 1.54893 * 104.19694 * 217.08796 * 10 8 7 12 12 C 1.54900 * 102.74723 * 37.96847 * 11 10 8 13 13 C 1.53871 * 110.03153 * 94.68648 * 8 7 6 14 14 H 1.08997 * 110.03678 * 238.61744 * 13 8 7 15 15 C 1.50699 * 110.03591 * 0.02562 * 13 8 7 16 16 H 1.08001 * 119.99688 * 52.15586 * 15 13 8 17 17 C 1.37874 * 120.00023 * 231.87690 * 15 13 8 18 18 N 1.31521 * 119.99878 * 173.21114 * 17 15 13 19 19 Si 1.86800 * 119.99997 * 353.21950 * 17 15 13 20 20 H 1.48503 * 109.47434 * 85.94063 * 19 17 15 21 21 H 1.48500 * 109.46974 * 205.93857 * 19 17 15 22 22 H 1.48495 * 109.46928 * 325.93841 * 19 17 15 23 23 C 1.34951 * 107.91947 * 359.58652 * 7 6 5 24 24 H 1.09005 * 109.47304 * 299.99560 * 1 2 3 25 25 H 1.09001 * 109.47025 * 59.99704 * 1 2 3 26 26 H 1.09001 * 109.47270 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46571 * 240.00316 * 2 1 3 28 28 H 1.08994 * 109.47561 * 300.00406 * 3 2 1 29 29 H 1.09001 * 109.46662 * 60.00580 * 3 2 1 30 30 H 1.09007 * 109.47061 * 179.97438 * 3 2 1 31 31 H 1.07991 * 125.89954 * 359.97438 * 5 4 2 32 32 H 1.09003 * 110.46499 * 98.42436 * 10 8 7 33 33 H 1.08995 * 110.51238 * 335.77713 * 10 8 7 34 34 H 1.09000 * 110.75814 * 279.66297 * 11 10 8 35 35 H 1.08992 * 110.91862 * 156.35829 * 11 10 8 36 36 H 1.08991 * 110.48446 * 203.37834 * 12 11 10 37 37 H 1.08996 * 110.48065 * 80.73781 * 12 11 10 38 38 H 0.97000 * 119.99456 * 180.02562 * 18 17 15 39 39 H 1.08003 * 126.12262 * 180.21374 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.7735 -0.3444 2.5553 6 7 2.3731 -1.2021 3.3407 7 7 3.0410 -2.1369 2.5393 8 6 3.8400 -3.2678 3.0178 9 1 4.2432 -3.0488 4.0065 10 6 4.9896 -3.5591 2.0295 11 6 5.1067 -5.1036 2.0276 12 6 3.6286 -5.5586 2.1151 13 6 2.9751 -4.5392 3.0710 14 1 2.9577 -4.9369 4.0857 15 6 1.5729 -4.2293 2.6140 16 1 1.4106 -3.7298 1.6702 17 6 0.4971 -4.5885 3.3979 18 7 -0.7158 -4.2020 3.0670 19 14 0.7621 -5.6238 4.9299 20 1 1.0934 -4.7380 6.0749 21 1 -0.4769 -6.3836 5.2343 22 1 1.8805 -6.5729 4.6986 23 6 2.8135 -1.8153 1.2486 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 3.1300 1.4425 0.0005 31 1 1.1782 0.4981 2.8747 32 1 5.9173 -3.1067 2.3799 33 1 4.7386 -3.1944 1.0335 34 1 5.6692 -5.4494 2.8949 35 1 5.5660 -5.4579 1.1049 36 1 3.5632 -6.5651 2.5280 37 1 3.1580 -5.5167 1.1329 38 1 -1.4726 -4.4545 3.6188 39 1 3.1882 -2.3445 0.3849 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167103198.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:52 Heat of formation + Delta-G solvation = 59.595544 kcal Electronic energy + Delta-G solvation = -18946.783762 eV Core-core repulsion = 16276.376672 eV Total energy + Delta-G solvation = -2670.407090 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.46203 -37.46276 -34.80729 -32.45606 -30.95470 -29.08512 -28.56527 -26.64190 -26.42497 -23.90505 -21.77844 -21.04470 -19.95147 -18.85858 -18.40637 -17.12695 -15.86903 -15.07162 -14.45694 -13.94778 -13.78151 -13.75570 -13.41656 -13.05320 -12.64763 -12.47267 -12.35048 -11.93825 -11.77345 -11.37026 -11.10807 -10.93420 -10.76287 -10.65141 -10.51332 -10.42833 -10.39341 -10.20867 -9.77010 -9.63194 -9.47697 -9.09741 -8.47705 -8.22407 -7.30235 -6.02830 -4.00565 2.97767 3.29932 3.35737 3.37566 3.57446 3.76039 4.44237 4.98008 5.18385 5.33322 5.36336 5.47407 5.49756 5.67447 5.74295 5.81154 5.97195 6.01407 6.05041 6.10499 6.17236 6.20458 6.25290 6.27034 6.31288 6.41305 6.52387 6.57352 6.60143 6.73956 6.84306 6.89821 7.01320 7.07226 7.20794 7.64485 7.71959 8.13514 8.52960 8.78696 9.02087 9.59514 11.09716 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019780 B = 0.009332 C = 0.007278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.262094 B = 2999.747522 C = 3846.133761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.009 4.009 3 C -0.138 4.138 4 C -0.247 4.247 5 C 0.039 3.961 6 N -0.286 5.286 7 N -0.311 5.311 8 C 0.156 3.844 9 H 0.082 0.918 10 C -0.130 4.130 11 C -0.125 4.125 12 C -0.118 4.118 13 C -0.003 4.003 14 H 0.043 0.957 15 C -0.498 4.498 16 H 0.079 0.921 17 C 0.078 3.922 18 N -0.890 5.890 19 Si 0.871 3.129 20 H -0.277 1.277 21 H -0.291 1.291 22 H -0.269 1.269 23 C 0.072 3.928 24 H 0.051 0.949 25 H 0.043 0.957 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.162 0.838 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.261 0.739 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.612 4.794 -4.887 11.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 C -0.195 4.195 4 C -0.259 4.259 5 C -0.146 4.146 6 N -0.108 5.108 7 N -0.090 5.090 8 C 0.053 3.947 9 H 0.100 0.900 10 C -0.169 4.169 11 C -0.163 4.163 12 C -0.156 4.156 13 C -0.023 4.023 14 H 0.062 0.938 15 C -0.536 4.536 16 H 0.097 0.903 17 C -0.124 4.124 18 N -0.527 5.527 19 Si 0.700 3.300 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.194 1.194 23 C -0.076 4.076 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.179 0.821 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.715 4.333 -3.536 10.355 hybrid contribution -0.366 -0.497 0.119 0.628 sum 8.349 3.836 -3.418 9.803 Atomic orbital electron populations 1.21789 0.95209 1.02255 1.00404 1.19241 0.94981 0.94264 0.94393 1.21809 1.00534 0.96378 1.00795 1.19649 1.09823 1.01631 0.94781 1.23229 1.00894 0.99031 0.91480 1.77155 1.12920 1.01267 1.19421 1.48145 1.36951 1.20714 1.03168 1.22191 0.89659 0.85993 0.96871 0.90031 1.22741 0.97101 0.97260 0.99773 1.22488 0.98707 0.94334 1.00787 1.22655 0.92622 0.99009 1.01323 1.20171 0.96363 0.89750 0.96039 0.93845 1.20794 0.87122 1.38371 1.07289 0.90292 1.25017 0.95280 0.95295 0.96844 1.69912 0.98808 1.44851 1.39176 0.86956 0.77348 0.81188 0.84541 1.20335 1.21717 1.19432 1.21752 1.00485 0.96684 0.88703 0.92962 0.93799 0.92171 0.91861 0.93534 0.92931 0.93245 0.82084 0.91861 0.90841 0.92074 0.92107 0.93015 0.91531 0.92896 0.82874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.08 37.16 0.34 -1.86 16 2 C -0.01 -0.14 3.28 -91.78 -0.30 -0.44 16 3 C -0.14 -1.79 9.08 37.16 0.34 -1.45 16 4 C -0.25 -4.69 4.80 -105.06 -0.50 -5.20 16 5 C 0.04 0.80 11.45 -17.36 -0.20 0.60 16 6 N -0.29 -6.63 12.58 30.62 0.39 -6.24 16 7 N -0.31 -6.69 2.36 -53.72 -0.13 -6.81 16 8 C 0.16 3.09 4.00 -66.76 -0.27 2.83 16 9 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 10 C -0.13 -2.03 6.37 -25.01 -0.16 -2.18 16 11 C -0.13 -1.87 6.91 -24.73 -0.17 -2.04 16 12 C -0.12 -2.23 6.35 -25.06 -0.16 -2.39 16 13 C 0.00 -0.07 2.76 -90.65 -0.25 -0.32 16 14 H 0.04 1.01 4.98 -51.93 -0.26 0.75 16 15 C -0.50 -13.43 7.44 -34.44 -0.26 -13.68 16 16 H 0.08 2.33 6.34 -52.49 -0.33 2.00 16 17 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 18 N -0.89 -27.27 13.96 55.43 0.77 -26.49 16 19 Si 0.87 21.88 26.91 -169.99 -4.57 17.31 16 20 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.27 -6.39 6.87 56.52 0.39 -6.00 16 23 C 0.07 1.42 8.53 -17.22 -0.15 1.28 16 24 H 0.05 0.83 8.02 -51.93 -0.42 0.41 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.68 8.02 -51.93 -0.42 0.26 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.16 2.88 8.06 -52.49 -0.42 2.46 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.11 5.94 -51.93 -0.31 0.81 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.31 7.85 -51.93 -0.41 0.90 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.15 2.67 6.88 -52.48 -0.36 2.31 16 LS Contribution 308.19 15.07 4.64 4.64 Total: -1.00 -31.08 308.19 -7.03 -38.11 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.30 Total: 2.21 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -1.84 Total: -22.72 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 1.03 Total: -39.55 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.57 Total: 17.31 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.08 -7.03 -38.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167103198.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.709 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds