Wall clock time and date at job start Mon Mar 30 2020 06:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47083 * 2 1 4 4 C 1.50694 * 109.47284 * 120.00308 * 2 1 3 5 5 C 1.39868 * 126.03977 * 299.99983 * 4 2 1 6 6 N 1.30839 * 108.20011 * 179.74054 * 5 4 2 7 7 N 1.40085 * 108.21011 * 0.40372 * 6 5 4 8 8 C 1.46499 * 126.04198 * 179.85672 * 7 6 5 9 9 H 1.09000 * 110.05253 * 333.27216 * 8 7 6 10 10 C 1.54370 * 110.04433 * 211.79932 * 8 7 6 11 11 C 1.54893 * 104.19694 * 217.08796 * 10 8 7 12 12 C 1.54900 * 102.74723 * 37.96847 * 11 10 8 13 13 C 1.53871 * 110.03153 * 94.68648 * 8 7 6 14 14 H 1.08997 * 110.03678 * 238.61744 * 13 8 7 15 15 C 1.50699 * 110.03591 * 0.02562 * 13 8 7 16 16 H 1.08001 * 119.99688 * 52.15586 * 15 13 8 17 17 C 1.37874 * 120.00023 * 231.87690 * 15 13 8 18 18 N 1.31521 * 119.99878 * 173.21114 * 17 15 13 19 19 Si 1.86800 * 119.99997 * 353.21950 * 17 15 13 20 20 H 1.48503 * 109.47434 * 85.94063 * 19 17 15 21 21 H 1.48500 * 109.46974 * 205.93857 * 19 17 15 22 22 H 1.48495 * 109.46928 * 325.93841 * 19 17 15 23 23 C 1.34951 * 107.91947 * 359.58652 * 7 6 5 24 24 H 1.09005 * 109.47304 * 299.99560 * 1 2 3 25 25 H 1.09001 * 109.47025 * 59.99704 * 1 2 3 26 26 H 1.09001 * 109.47270 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46571 * 240.00316 * 2 1 3 28 28 H 1.08994 * 109.47561 * 300.00406 * 3 2 1 29 29 H 1.09001 * 109.46662 * 60.00580 * 3 2 1 30 30 H 1.09007 * 109.47061 * 179.97438 * 3 2 1 31 31 H 1.07991 * 125.89954 * 359.97438 * 5 4 2 32 32 H 1.09003 * 110.46499 * 98.42436 * 10 8 7 33 33 H 1.08995 * 110.51238 * 335.77713 * 10 8 7 34 34 H 1.09000 * 110.75814 * 279.66297 * 11 10 8 35 35 H 1.08992 * 110.91862 * 156.35829 * 11 10 8 36 36 H 1.08991 * 110.48446 * 203.37834 * 12 11 10 37 37 H 1.08996 * 110.48065 * 80.73781 * 12 11 10 38 38 H 0.97000 * 119.99456 * 180.02562 * 18 17 15 39 39 H 1.08003 * 126.12262 * 180.21374 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.7735 -0.3444 2.5553 6 7 2.3731 -1.2021 3.3407 7 7 3.0410 -2.1369 2.5393 8 6 3.8400 -3.2678 3.0178 9 1 4.2432 -3.0488 4.0065 10 6 4.9896 -3.5591 2.0295 11 6 5.1067 -5.1036 2.0276 12 6 3.6286 -5.5586 2.1151 13 6 2.9751 -4.5392 3.0710 14 1 2.9577 -4.9369 4.0857 15 6 1.5729 -4.2293 2.6140 16 1 1.4106 -3.7298 1.6702 17 6 0.4971 -4.5885 3.3979 18 7 -0.7158 -4.2020 3.0670 19 14 0.7621 -5.6238 4.9299 20 1 1.0934 -4.7380 6.0749 21 1 -0.4769 -6.3836 5.2343 22 1 1.8805 -6.5729 4.6986 23 6 2.8135 -1.8153 1.2486 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 3.1300 1.4425 0.0005 31 1 1.1782 0.4981 2.8747 32 1 5.9173 -3.1067 2.3799 33 1 4.7386 -3.1944 1.0335 34 1 5.6692 -5.4494 2.8949 35 1 5.5660 -5.4579 1.1049 36 1 3.5632 -6.5651 2.5280 37 1 3.1580 -5.5167 1.1329 38 1 -1.4726 -4.4545 3.6188 39 1 3.1882 -2.3445 0.3849 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167103198.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:51 Heat of formation + Delta-G solvation = 41.742019 kcal Electronic energy + Delta-G solvation = -18947.557949 eV Core-core repulsion = 16276.376672 eV Total energy + Delta-G solvation = -2671.181277 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.02661 -38.97397 -36.11101 -34.54289 -32.48724 -30.78352 -30.12483 -27.91084 -27.80257 -25.77626 -23.16295 -22.61287 -21.37974 -20.34487 -20.09409 -19.04546 -17.48264 -16.63899 -16.15039 -15.48930 -15.33966 -15.09237 -14.96901 -14.52038 -14.39731 -14.06936 -13.74966 -13.49901 -13.04981 -12.91151 -12.84714 -12.44390 -12.19826 -12.10801 -11.86512 -11.83262 -11.79474 -11.67166 -11.48119 -11.40193 -11.02323 -10.97488 -10.63573 -9.88104 -8.85177 -8.22307 -6.20393 1.27841 1.28797 1.36379 1.38921 2.04607 2.20145 2.34364 3.10543 3.67245 3.92160 4.04006 4.08725 4.18759 4.28089 4.42420 4.53931 4.56209 4.61439 4.68953 4.81557 4.88878 4.91434 4.94694 4.99913 5.04846 5.14100 5.15163 5.22070 5.28660 5.33166 5.44745 5.48622 5.58597 5.59438 5.69276 5.72319 6.11803 6.34203 6.60286 6.84334 7.17425 7.41035 8.93548 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019780 B = 0.009332 C = 0.007278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.262094 B = 2999.747522 C = 3846.133761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.009 4.009 3 C -0.129 4.129 4 C -0.249 4.249 5 C 0.029 3.971 6 N -0.335 5.335 7 N -0.322 5.322 8 C 0.148 3.852 9 H 0.081 0.919 10 C -0.119 4.119 11 C -0.110 4.110 12 C -0.115 4.115 13 C -0.015 4.015 14 H 0.034 0.966 15 C -0.476 4.476 16 H 0.044 0.956 17 C 0.012 3.988 18 N -0.944 5.944 19 Si 0.928 3.072 20 H -0.284 1.284 21 H -0.294 1.294 22 H -0.243 1.243 23 C 0.060 3.940 24 H 0.046 0.954 25 H 0.074 0.926 26 H 0.023 0.977 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.178 0.822 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.257 0.743 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.203 4.722 -5.784 13.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.028 4.028 3 C -0.187 4.187 4 C -0.261 4.261 5 C -0.156 4.156 6 N -0.157 5.157 7 N -0.101 5.101 8 C 0.045 3.955 9 H 0.099 0.901 10 C -0.158 4.158 11 C -0.147 4.147 12 C -0.154 4.154 13 C -0.035 4.035 14 H 0.052 0.948 15 C -0.515 4.515 16 H 0.063 0.937 17 C -0.184 4.184 18 N -0.585 5.585 19 Si 0.755 3.245 20 H -0.210 1.210 21 H -0.221 1.221 22 H -0.167 1.167 23 C -0.088 4.088 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.042 0.958 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.195 0.805 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 11.343 4.250 -4.442 12.901 hybrid contribution -1.181 -0.414 0.330 1.294 sum 10.162 3.835 -4.112 11.614 Atomic orbital electron populations 1.21747 0.95614 1.00203 1.01668 1.19348 0.94524 0.95874 0.93096 1.21725 1.00689 0.94376 1.01892 1.20130 1.08946 1.01467 0.95521 1.23640 1.00554 0.99153 0.92236 1.77059 1.14668 1.02823 1.21170 1.48303 1.37296 1.20927 1.03545 1.22333 0.90342 0.84127 0.98663 0.90111 1.22738 0.96241 0.98061 0.98726 1.22451 0.95695 0.93318 1.03275 1.22492 0.95444 0.98045 0.99373 1.20283 0.94574 0.92369 0.96267 0.94780 1.20995 0.89483 1.35692 1.05313 0.93747 1.25805 0.95168 0.97222 1.00211 1.70074 0.99738 1.47649 1.40997 0.86025 0.77798 0.79988 0.80687 1.21020 1.22052 1.16676 1.22229 1.00720 0.97017 0.88833 0.93528 0.90725 0.95786 0.90768 0.91137 0.93149 0.92908 0.80508 0.89003 0.90418 0.90155 0.89100 0.92623 0.92889 0.93436 0.80827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.08 71.98 0.65 -3.54 16 2 C -0.01 -0.26 3.28 -11.54 -0.04 -0.30 16 3 C -0.13 -3.05 9.08 71.98 0.65 -2.40 16 4 C -0.25 -9.43 4.80 -20.15 -0.10 -9.53 16 5 C 0.03 1.19 11.45 85.24 0.98 2.17 16 6 N -0.34 -15.83 12.58 -57.03 -0.72 -16.55 16 7 N -0.32 -13.79 2.36 -323.88 -0.76 -14.56 16 8 C 0.15 5.68 4.00 45.75 0.18 5.86 16 9 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 10 C -0.12 -3.29 6.37 31.71 0.20 -3.09 16 11 C -0.11 -2.79 6.91 31.89 0.22 -2.57 16 12 C -0.12 -4.10 6.35 31.67 0.20 -3.90 16 13 C -0.02 -0.66 2.76 -10.82 -0.03 -0.69 16 14 H 0.03 1.55 4.98 -2.39 -0.01 1.54 16 15 C -0.48 -26.20 7.44 25.60 0.19 -26.01 16 16 H 0.04 2.71 6.34 -2.91 -0.02 2.69 16 17 C 0.01 0.74 5.47 84.65 0.46 1.20 16 18 N -0.94 -60.36 13.96 21.45 0.30 -60.06 16 19 Si 0.93 45.95 26.91 68.60 1.85 47.80 16 20 H -0.28 -14.20 7.11 99.48 0.71 -13.50 16 21 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 22 H -0.24 -10.85 6.87 99.48 0.68 -10.17 16 23 C 0.06 2.35 8.53 83.54 0.71 3.06 16 24 H 0.05 1.47 8.02 -2.38 -0.02 1.45 16 25 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 2.05 8.11 -2.39 -0.02 2.03 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.05 1.20 8.02 -2.39 -0.02 1.18 16 30 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.18 6.45 8.06 -2.92 -0.02 6.43 16 32 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.08 2.09 5.94 -2.39 -0.01 2.08 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.05 2.01 7.85 -2.39 -0.02 1.99 16 38 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 39 H 0.17 5.86 6.88 -2.91 -0.02 5.84 16 Total: -1.00 -70.56 308.19 5.94 -64.62 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.99 Total: 18.49 kcal Atomic # 6 Polarization: -44.03 SS G_CDS: 4.29 Total: -39.74 kcal Atomic # 7 Polarization: -89.98 SS G_CDS: -1.18 Total: -91.16 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.85 Total: 47.80 kcal Total: -70.56 5.94 -64.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167103198.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.362 kcal (2) G-P(sol) polarization free energy of solvation -70.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds