Wall clock time and date at job start Mon Mar 30 2020 06:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46829 * 2 1 4 4 C 1.50703 * 109.46840 * 119.99665 * 2 1 3 5 5 C 1.39868 * 126.04299 * 299.99724 * 4 2 1 6 6 N 1.30837 * 108.20148 * 180.02562 * 5 4 2 7 7 N 1.40081 * 108.20828 * 0.02562 * 6 5 4 8 8 C 1.46494 * 126.04084 * 180.26238 * 7 6 5 9 9 H 1.08999 * 110.01936 * 24.75022 * 8 7 6 10 10 C 1.54267 * 110.03622 * 146.14594 * 8 7 6 11 11 C 1.54891 * 104.19430 * 95.67484 * 10 8 7 12 12 C 1.54886 * 102.74966 * 37.94682 * 11 10 8 13 13 C 1.53879 * 110.03431 * 263.31159 * 8 7 6 14 14 H 1.08995 * 110.03105 * 0.02562 * 13 8 7 15 15 C 1.50701 * 110.03181 * 121.42523 * 13 8 7 16 16 H 1.07998 * 120.00255 * 0.02562 * 15 13 8 17 17 C 1.37877 * 120.00000 * 180.02562 * 15 13 8 18 18 N 1.31515 * 119.99992 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99901 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47018 * 90.00213 * 19 17 15 21 21 H 1.48507 * 109.47090 * 209.99751 * 19 17 15 22 22 H 1.48490 * 109.47538 * 330.00102 * 19 17 15 23 23 C 1.34954 * 107.92384 * 0.02562 * 7 6 5 24 24 H 1.09000 * 109.47280 * 299.99996 * 1 2 3 25 25 H 1.08995 * 109.46988 * 60.00105 * 1 2 3 26 26 H 1.08999 * 109.46897 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47280 * 240.00004 * 2 1 3 28 28 H 1.09004 * 109.47250 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47250 * 299.99735 * 3 2 1 30 30 H 1.09000 * 109.47186 * 59.99946 * 3 2 1 31 31 H 1.08001 * 125.89990 * 359.97438 * 5 4 2 32 32 H 1.08995 * 110.48621 * 214.35329 * 10 8 7 33 33 H 1.08995 * 110.48607 * 336.99990 * 10 8 7 34 34 H 1.09005 * 110.75221 * 156.25754 * 11 10 8 35 35 H 1.08998 * 110.75986 * 279.44241 * 11 10 8 36 36 H 1.08999 * 110.49041 * 80.73497 * 12 11 10 37 37 H 1.09005 * 110.48741 * 203.24877 * 12 11 10 38 38 H 0.97001 * 119.99821 * 179.97438 * 18 17 15 39 39 H 1.07999 * 126.12426 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7735 -0.3442 2.5554 6 7 2.3780 -1.1982 3.3410 7 7 3.0421 -2.1359 2.5396 8 6 3.8377 -3.2691 3.0181 9 1 3.5120 -3.5581 4.0173 10 6 3.6946 -4.4616 2.0500 11 6 4.9239 -4.3417 1.1154 12 6 6.0418 -3.8729 2.0795 13 6 5.3301 -2.8948 3.0368 14 1 5.4624 -1.8699 2.6903 15 6 5.8822 -3.0436 4.4312 16 1 5.2395 -3.3731 5.2341 17 6 7.2078 -2.7591 4.6818 18 7 7.9904 -2.3573 3.7041 19 14 7.8923 -2.9442 6.4100 20 1 8.4115 -4.3236 6.5916 21 1 8.9944 -1.9698 6.6129 22 1 6.8153 -2.6865 7.3993 23 6 2.8151 -1.8139 1.2488 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.1782 0.4984 2.8748 32 1 3.7224 -5.4033 2.5981 33 1 2.7708 -4.3795 1.4775 34 1 5.1719 -5.3086 0.6775 35 1 4.7460 -3.6006 0.3362 36 1 6.4488 -4.7196 2.6324 37 1 6.8321 -3.3631 1.5283 38 1 8.9229 -2.1568 3.8805 39 1 3.1898 -2.3433 0.3852 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167103307.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:54 Heat of formation + Delta-G solvation = 48.486047 kcal Electronic energy + Delta-G solvation = -18452.098538 eV Core-core repulsion = 15781.209704 eV Total energy + Delta-G solvation = -2670.888834 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.79937 -37.41240 -35.10817 -32.64886 -30.90577 -29.20327 -28.20006 -26.94281 -26.63900 -24.08306 -21.99640 -21.27272 -19.83340 -19.28335 -18.62005 -16.58857 -16.12797 -14.74799 -14.46636 -14.37498 -14.10742 -13.93252 -13.64540 -13.26308 -12.81451 -12.52221 -12.19265 -12.03462 -11.77383 -11.18453 -11.13061 -11.02758 -10.96266 -10.78559 -10.68407 -10.53935 -10.30755 -10.16201 -9.84781 -9.81120 -9.67897 -8.92737 -8.66154 -8.44561 -7.70853 -6.07491 -4.10752 2.57509 3.23370 3.28237 3.32613 3.35429 3.40174 4.40473 4.93238 5.14925 5.20575 5.31854 5.38595 5.42662 5.44696 5.52201 5.59411 5.76999 5.87352 5.95828 5.99865 6.03976 6.09265 6.22627 6.28575 6.36689 6.45745 6.46730 6.50335 6.55200 6.60781 6.70827 7.01386 7.12460 7.25065 7.58326 7.61869 7.83267 7.95340 8.28434 8.41418 8.89793 9.53137 11.02256 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.027564 B = 0.006043 C = 0.005631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.584878 B = 4631.967457 C = 4971.576887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.012 4.012 3 C -0.141 4.141 4 C -0.251 4.251 5 C 0.034 3.966 6 N -0.291 5.291 7 N -0.336 5.336 8 C 0.151 3.849 9 H 0.096 0.904 10 C -0.129 4.129 11 C -0.135 4.135 12 C -0.093 4.093 13 C 0.044 3.956 14 H 0.037 0.963 15 C -0.515 4.515 16 H 0.058 0.942 17 C 0.065 3.935 18 N -0.888 5.888 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.058 3.942 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.169 0.831 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.261 0.739 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.682 1.010 -8.279 13.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.031 4.031 3 C -0.198 4.198 4 C -0.263 4.263 5 C -0.152 4.152 6 N -0.113 5.113 7 N -0.116 5.116 8 C 0.051 3.949 9 H 0.114 0.886 10 C -0.168 4.168 11 C -0.172 4.172 12 C -0.132 4.132 13 C 0.025 3.975 14 H 0.056 0.944 15 C -0.553 4.553 16 H 0.076 0.924 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.720 3.280 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.091 4.091 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.186 0.814 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.162 0.603 -7.011 12.361 hybrid contribution 0.418 0.195 0.116 0.476 sum -9.744 0.798 -6.895 11.963 Atomic orbital electron populations 1.21808 0.95439 1.01384 1.01032 1.19288 0.94636 0.94934 0.94279 1.21815 1.01279 0.95779 1.00972 1.19858 1.10139 1.01265 0.95049 1.23480 1.00724 0.99528 0.91423 1.77363 1.12187 1.02231 1.19503 1.49075 1.37188 1.22096 1.03276 1.22584 0.93417 0.81176 0.97749 0.88628 1.22720 0.98460 0.97877 0.97707 1.22719 0.96651 1.00049 0.97807 1.22332 0.95859 0.99363 0.95628 1.19648 0.85485 0.96122 0.96241 0.94447 1.21120 0.94999 1.45905 0.93300 0.92418 1.24939 0.97046 0.94802 0.96971 1.69967 1.06047 1.45183 1.31396 0.86582 0.78754 0.77838 0.84821 1.20615 1.21209 1.19817 1.22206 0.99706 0.98015 0.89127 0.92818 0.93239 0.93008 0.91461 0.92693 0.93248 0.92804 0.81383 0.90117 0.92178 0.92525 0.92712 0.92310 0.92038 0.92954 0.82029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.08 37.16 0.34 -1.15 16 2 C -0.01 -0.14 3.28 -91.77 -0.30 -0.45 16 3 C -0.14 -1.65 9.08 37.16 0.34 -1.31 16 4 C -0.25 -4.00 4.80 -105.05 -0.50 -4.51 16 5 C 0.03 0.58 11.45 -17.37 -0.20 0.38 16 6 N -0.29 -6.10 12.58 30.62 0.39 -5.72 16 7 N -0.34 -6.79 3.43 -53.78 -0.18 -6.97 16 8 C 0.15 3.14 3.65 -66.81 -0.24 2.89 16 9 H 0.10 2.09 7.37 -51.93 -0.38 1.71 16 10 C -0.13 -2.17 5.94 -25.07 -0.15 -2.32 16 11 C -0.13 -2.31 6.69 -24.74 -0.17 -2.48 16 12 C -0.09 -2.07 5.44 -25.08 -0.14 -2.20 16 13 C 0.04 1.08 2.61 -90.65 -0.24 0.85 16 14 H 0.04 1.05 7.92 -51.93 -0.41 0.64 16 15 C -0.51 -14.02 8.36 -34.44 -0.29 -14.31 16 16 H 0.06 1.56 7.33 -52.49 -0.38 1.18 16 17 C 0.06 1.78 5.33 -17.82 -0.09 1.69 16 18 N -0.89 -25.37 12.43 55.43 0.69 -24.68 16 19 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.06 1.01 9.98 -17.22 -0.17 0.83 16 24 H 0.05 0.57 8.02 -51.93 -0.42 0.15 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.62 8.02 -51.93 -0.42 0.20 16 31 H 0.17 2.39 8.06 -52.49 -0.42 1.96 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 0.91 7.38 -51.93 -0.38 0.53 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.88 6.71 -51.93 -0.35 0.53 16 36 H 0.06 1.37 7.85 -51.93 -0.41 0.96 16 37 H 0.06 1.47 7.97 -51.93 -0.41 1.05 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.16 2.46 6.40 -52.49 -0.34 2.12 16 LS Contribution 313.27 15.07 4.72 4.72 Total: -1.00 -29.48 313.27 -7.64 -37.12 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.42 Total: 1.24 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: -1.81 Total: -22.08 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.89 Total: -37.36 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.48 -7.64 -37.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167103307.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.606 kcal (2) G-P(sol) polarization free energy of solvation -29.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds