Wall clock time and date at job start Mon Mar 30 2020 06:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46829 * 2 1 4 4 C 1.50703 * 109.46840 * 119.99665 * 2 1 3 5 5 C 1.39868 * 126.04299 * 299.99724 * 4 2 1 6 6 N 1.30837 * 108.20148 * 180.02562 * 5 4 2 7 7 N 1.40081 * 108.20828 * 0.02562 * 6 5 4 8 8 C 1.46494 * 126.04084 * 180.26238 * 7 6 5 9 9 H 1.08999 * 110.01936 * 24.75022 * 8 7 6 10 10 C 1.54267 * 110.03622 * 146.14594 * 8 7 6 11 11 C 1.54891 * 104.19430 * 95.67484 * 10 8 7 12 12 C 1.54886 * 102.74966 * 37.94682 * 11 10 8 13 13 C 1.53879 * 110.03431 * 263.31159 * 8 7 6 14 14 H 1.08995 * 110.03105 * 0.02562 * 13 8 7 15 15 C 1.50701 * 110.03181 * 121.42523 * 13 8 7 16 16 H 1.07998 * 120.00255 * 0.02562 * 15 13 8 17 17 C 1.37877 * 120.00000 * 180.02562 * 15 13 8 18 18 N 1.31515 * 119.99992 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99901 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47018 * 90.00213 * 19 17 15 21 21 H 1.48507 * 109.47090 * 209.99751 * 19 17 15 22 22 H 1.48490 * 109.47538 * 330.00102 * 19 17 15 23 23 C 1.34954 * 107.92384 * 0.02562 * 7 6 5 24 24 H 1.09000 * 109.47280 * 299.99996 * 1 2 3 25 25 H 1.08995 * 109.46988 * 60.00105 * 1 2 3 26 26 H 1.08999 * 109.46897 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47280 * 240.00004 * 2 1 3 28 28 H 1.09004 * 109.47250 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47250 * 299.99735 * 3 2 1 30 30 H 1.09000 * 109.47186 * 59.99946 * 3 2 1 31 31 H 1.08001 * 125.89990 * 359.97438 * 5 4 2 32 32 H 1.08995 * 110.48621 * 214.35329 * 10 8 7 33 33 H 1.08995 * 110.48607 * 336.99990 * 10 8 7 34 34 H 1.09005 * 110.75221 * 156.25754 * 11 10 8 35 35 H 1.08998 * 110.75986 * 279.44241 * 11 10 8 36 36 H 1.08999 * 110.49041 * 80.73497 * 12 11 10 37 37 H 1.09005 * 110.48741 * 203.24877 * 12 11 10 38 38 H 0.97001 * 119.99821 * 179.97438 * 18 17 15 39 39 H 1.07999 * 126.12426 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7735 -0.3442 2.5554 6 7 2.3780 -1.1982 3.3410 7 7 3.0421 -2.1359 2.5396 8 6 3.8377 -3.2691 3.0181 9 1 3.5120 -3.5581 4.0173 10 6 3.6946 -4.4616 2.0500 11 6 4.9239 -4.3417 1.1154 12 6 6.0418 -3.8729 2.0795 13 6 5.3301 -2.8948 3.0368 14 1 5.4624 -1.8699 2.6903 15 6 5.8822 -3.0436 4.4312 16 1 5.2395 -3.3731 5.2341 17 6 7.2078 -2.7591 4.6818 18 7 7.9904 -2.3573 3.7041 19 14 7.8923 -2.9442 6.4100 20 1 8.4115 -4.3236 6.5916 21 1 8.9944 -1.9698 6.6129 22 1 6.8153 -2.6865 7.3993 23 6 2.8151 -1.8139 1.2488 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.1782 0.4984 2.8748 32 1 3.7224 -5.4033 2.5981 33 1 2.7708 -4.3795 1.4775 34 1 5.1719 -5.3086 0.6775 35 1 4.7460 -3.6006 0.3362 36 1 6.4488 -4.7196 2.6324 37 1 6.8321 -3.3631 1.5283 38 1 8.9229 -2.1568 3.8805 39 1 3.1898 -2.3433 0.3852 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167103307.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:53 Heat of formation + Delta-G solvation = 32.715984 kcal Electronic energy + Delta-G solvation = -18452.782379 eV Core-core repulsion = 15781.209704 eV Total energy + Delta-G solvation = -2671.572676 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.20350 -39.00981 -36.19542 -34.67305 -32.40128 -30.68034 -29.91123 -28.14843 -27.80957 -26.01352 -23.15173 -22.76093 -21.43598 -20.67463 -20.10454 -18.59267 -17.60559 -16.55546 -15.91585 -15.74553 -15.60675 -15.14906 -15.05575 -14.54715 -14.35269 -13.78213 -13.66982 -13.37022 -13.05133 -12.88859 -12.77865 -12.53555 -12.36106 -12.24518 -11.94356 -11.85686 -11.75296 -11.68847 -11.57156 -11.46238 -11.10237 -10.94478 -10.54848 -10.17276 -9.08417 -8.19965 -6.29878 1.16684 1.35708 1.37138 1.47267 1.79799 2.01689 2.38331 3.11480 3.62765 3.87169 3.94831 4.09086 4.12400 4.23814 4.40888 4.51844 4.58039 4.65793 4.81979 4.86763 4.87754 4.90546 4.94005 4.96025 5.05112 5.10666 5.14504 5.28730 5.30174 5.37381 5.39001 5.56241 5.57031 5.63629 5.80543 5.83120 5.95788 6.22149 6.40174 6.78087 6.99102 7.37142 8.88955 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.027564 B = 0.006043 C = 0.005631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.584878 B = 4631.967457 C = 4971.576887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.011 4.011 3 C -0.140 4.140 4 C -0.243 4.243 5 C 0.036 3.964 6 N -0.346 5.346 7 N -0.355 5.355 8 C 0.156 3.844 9 H 0.074 0.926 10 C -0.115 4.115 11 C -0.119 4.119 12 C -0.087 4.087 13 C 0.043 3.957 14 H -0.010 1.010 15 C -0.534 4.534 16 H 0.050 0.950 17 C 0.016 3.984 18 N -0.917 5.917 19 Si 0.953 3.047 20 H -0.267 1.267 21 H -0.284 1.284 22 H -0.274 1.274 23 C 0.046 3.954 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.036 0.964 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.195 0.805 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.041 0.959 37 H 0.034 0.966 38 H 0.261 0.739 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.178 0.643 -9.703 15.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.031 4.031 3 C -0.197 4.197 4 C -0.254 4.254 5 C -0.149 4.149 6 N -0.168 5.168 7 N -0.136 5.136 8 C 0.055 3.945 9 H 0.092 0.908 10 C -0.154 4.154 11 C -0.156 4.156 12 C -0.125 4.125 13 C 0.024 3.976 14 H 0.008 0.992 15 C -0.572 4.572 16 H 0.068 0.932 17 C -0.183 4.183 18 N -0.555 5.555 19 Si 0.778 3.222 20 H -0.193 1.193 21 H -0.209 1.209 22 H -0.199 1.199 23 C -0.100 4.100 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.212 0.788 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -11.673 0.234 -8.447 14.411 hybrid contribution 0.854 0.423 0.549 1.100 sum -10.820 0.658 -7.898 13.412 Atomic orbital electron populations 1.21763 0.93756 1.01540 1.02139 1.19411 0.95947 0.94906 0.92795 1.21802 1.00099 0.95587 1.02208 1.20319 1.08755 1.00496 0.95864 1.24020 0.99724 0.99205 0.91936 1.77294 1.14212 1.03802 1.21468 1.48970 1.38111 1.22350 1.04168 1.22293 0.90915 0.82989 0.98311 0.90797 1.22676 0.99381 0.96407 0.96918 1.22624 0.94263 1.01827 0.96930 1.22092 0.96647 0.97838 0.95961 1.19534 0.88763 0.94083 0.95211 0.99189 1.21494 0.95306 1.45683 0.94736 0.93208 1.25697 0.97412 0.94595 1.00603 1.70086 1.06209 1.46082 1.33173 0.85633 0.77893 0.78316 0.80336 1.19264 1.20945 1.19855 1.22729 0.99822 0.98808 0.88689 0.92831 0.91076 0.93338 0.90342 0.94517 0.90811 0.92846 0.78804 0.88757 0.89574 0.89417 0.91358 0.93969 0.94705 0.92964 0.79822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.08 71.98 0.65 -1.79 16 2 C -0.01 -0.24 3.28 -11.54 -0.04 -0.28 16 3 C -0.14 -2.93 9.08 71.98 0.65 -2.28 16 4 C -0.24 -7.36 4.80 -20.14 -0.10 -7.46 16 5 C 0.04 1.22 11.45 85.24 0.98 2.19 16 6 N -0.35 -14.72 12.58 -57.02 -0.72 -15.44 16 7 N -0.36 -14.44 3.43 -324.05 -1.11 -15.55 16 8 C 0.16 6.58 3.65 45.72 0.17 6.75 16 9 H 0.07 3.36 7.37 -2.39 -0.02 3.35 16 10 C -0.12 -3.66 5.94 31.67 0.19 -3.47 16 11 C -0.12 -3.84 6.69 31.88 0.21 -3.62 16 12 C -0.09 -3.91 5.44 31.67 0.17 -3.74 16 13 C 0.04 2.21 2.61 -10.82 -0.03 2.18 16 14 H -0.01 -0.60 7.92 -2.39 -0.02 -0.62 16 15 C -0.53 -30.21 8.36 25.60 0.21 -30.00 16 16 H 0.05 2.81 7.33 -2.91 -0.02 2.79 16 17 C 0.02 0.92 5.33 84.65 0.45 1.37 16 18 N -0.92 -54.10 12.43 21.45 0.27 -53.83 16 19 Si 0.95 44.77 29.54 68.60 2.03 46.79 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 23 C 0.05 1.56 9.98 83.54 0.83 2.39 16 24 H 0.05 0.97 8.02 -2.39 -0.02 0.95 16 25 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 26 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.08 1.59 8.11 -2.39 -0.02 1.57 16 28 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.11 8.02 -2.39 -0.02 1.09 16 31 H 0.20 5.24 8.06 -2.91 -0.02 5.22 16 32 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.09 2.33 7.38 -2.39 -0.02 2.32 16 34 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 35 H 0.07 2.03 6.71 -2.39 -0.02 2.01 16 36 H 0.04 1.99 7.85 -2.39 -0.02 1.98 16 37 H 0.03 1.71 7.97 -2.38 -0.02 1.69 16 38 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 39 H 0.18 5.15 6.40 -2.91 -0.02 5.13 16 Total: -1.00 -66.98 313.27 5.83 -61.15 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 1.00 Total: 14.63 kcal Atomic # 6 Polarization: -42.11 SS G_CDS: 4.36 Total: -37.75 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -1.56 Total: -84.82 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -66.98 5.83 -61.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167103307.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.869 kcal (2) G-P(sol) polarization free energy of solvation -66.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds