Wall clock time and date at job start Mon Mar 30 2020 06:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47477 * 2 1 4 4 C 1.50699 * 109.47152 * 120.00296 * 2 1 3 5 5 C 1.39872 * 126.03638 * 299.99437 * 4 2 1 6 6 N 1.30842 * 108.20449 * 179.74042 * 5 4 2 7 7 N 1.40085 * 108.19921 * 0.40786 * 6 5 4 8 8 C 1.46501 * 126.03261 * 179.85317 * 7 6 5 9 9 H 1.08995 * 110.05849 * 334.65172 * 8 7 6 10 10 C 1.54270 * 110.03433 * 213.23247 * 8 7 6 11 11 C 1.54887 * 104.19898 * 264.33004 * 10 8 7 12 12 C 1.54890 * 102.91108 * 321.96021 * 11 10 8 13 13 C 1.53877 * 110.03274 * 96.06996 * 8 7 6 14 14 H 1.08999 * 110.03363 * 359.95198 * 13 8 7 15 15 C 1.50703 * 110.03190 * 238.56653 * 13 8 7 16 16 H 1.07994 * 119.99793 * 0.02562 * 15 13 8 17 17 C 1.37877 * 119.99975 * 180.02562 * 15 13 8 18 18 N 1.31509 * 120.00140 * 180.02562 * 17 15 13 19 19 Si 1.86807 * 120.00084 * 359.97438 * 17 15 13 20 20 H 1.48494 * 109.46925 * 90.00021 * 19 17 15 21 21 H 1.48500 * 109.47170 * 210.00382 * 19 17 15 22 22 H 1.48498 * 109.46875 * 330.00122 * 19 17 15 23 23 C 1.34947 * 107.92992 * 359.58711 * 7 6 5 24 24 H 1.08996 * 109.47053 * 300.00082 * 1 2 3 25 25 H 1.09005 * 109.47271 * 60.00339 * 1 2 3 26 26 H 1.09006 * 109.47217 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47195 * 239.99921 * 2 1 3 28 28 H 1.08994 * 109.47078 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46594 * 300.00076 * 3 2 1 30 30 H 1.08996 * 109.47046 * 59.99914 * 3 2 1 31 31 H 1.08003 * 125.89986 * 0.02562 * 5 4 2 32 32 H 1.08998 * 110.48587 * 145.64586 * 10 8 7 33 33 H 1.09001 * 110.59315 * 23.06334 * 10 8 7 34 34 H 1.09002 * 110.75856 * 80.36931 * 11 10 8 35 35 H 1.09006 * 110.75640 * 203.55917 * 11 10 8 36 36 H 1.09005 * 110.48480 * 156.71548 * 12 11 10 37 37 H 1.08999 * 110.48784 * 279.35472 * 12 11 10 38 38 H 0.97001 * 120.00473 * 179.97438 * 18 17 15 39 39 H 1.07998 * 126.12653 * 180.21702 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.7735 -0.3443 2.5553 6 7 2.3729 -1.2019 3.3409 7 7 3.0408 -2.1368 2.5395 8 6 3.8398 -3.2676 3.0181 9 1 4.2228 -3.0586 4.0169 10 6 5.0098 -3.5358 2.0490 11 6 4.4814 -4.6533 1.1157 12 6 3.6650 -5.5510 2.0784 13 6 2.9842 -4.5464 3.0386 14 1 1.9742 -4.3254 2.6933 15 6 2.9396 -5.1153 4.4334 16 1 3.4667 -4.6204 5.2356 17 6 2.2258 -6.2677 4.6854 18 7 2.1865 -6.7640 5.9026 19 14 1.3134 -7.1234 3.2980 20 1 2.2105 -8.1160 2.6538 21 1 0.1192 -7.8167 3.8444 22 1 0.8851 -6.1177 2.2929 23 6 2.8134 -1.8152 1.2488 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.1776 0.4979 2.8748 32 1 5.8875 -3.8792 2.5964 33 1 5.2456 -2.6395 1.4753 34 1 3.8403 -4.2368 0.3388 35 1 5.3077 -5.2112 0.6748 36 1 2.9187 -6.1224 1.5264 37 1 4.3264 -6.2187 2.6305 38 1 1.6840 -7.5745 6.0800 39 1 3.1881 -2.3445 0.3852 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167103413.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:56 Heat of formation + Delta-G solvation = 36.591687 kcal Electronic energy + Delta-G solvation = -18539.532027 eV Core-core repulsion = 15868.127415 eV Total energy + Delta-G solvation = -2671.404612 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.24975 -39.15652 -36.21198 -34.71182 -32.54823 -31.00277 -30.26272 -28.25013 -27.81351 -25.76340 -23.16186 -22.71980 -21.70918 -20.68281 -20.16655 -18.97707 -17.65466 -16.68372 -16.00520 -15.72743 -15.46958 -15.32093 -15.00799 -14.82723 -14.52458 -14.09162 -13.76573 -13.44864 -13.10711 -12.91731 -12.78920 -12.59148 -12.37288 -12.19640 -11.95790 -11.80905 -11.76103 -11.68992 -11.62561 -11.53103 -11.18528 -11.10315 -10.79259 -10.22994 -9.12115 -8.35856 -6.39803 1.13813 1.24990 1.30249 1.39022 1.74760 1.99692 2.27168 2.98546 3.54848 3.73215 3.89997 4.04653 4.07576 4.22581 4.38586 4.48691 4.51416 4.55643 4.63294 4.68070 4.80214 4.87423 4.90417 4.94217 4.95713 5.04769 5.13809 5.14474 5.27506 5.28517 5.28926 5.36693 5.53953 5.55594 5.59740 5.65633 5.92591 6.18860 6.34878 6.64549 6.96550 7.24275 8.81191 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.026211 B = 0.006566 C = 0.006293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.981973 B = 4263.532150 C = 4448.603887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.010 4.010 3 C -0.136 4.136 4 C -0.242 4.242 5 C 0.037 3.963 6 N -0.349 5.349 7 N -0.359 5.359 8 C 0.165 3.835 9 H 0.067 0.933 10 C -0.117 4.117 11 C -0.112 4.112 12 C -0.133 4.133 13 C 0.009 3.991 14 H 0.015 0.985 15 C -0.516 4.516 16 H 0.029 0.971 17 C 0.016 3.984 18 N -0.948 5.948 19 Si 0.943 3.057 20 H -0.251 1.251 21 H -0.296 1.296 22 H -0.256 1.256 23 C 0.048 3.952 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.194 0.806 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.266 0.734 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.716 11.423 -17.739 21.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.030 4.030 3 C -0.193 4.193 4 C -0.253 4.253 5 C -0.148 4.148 6 N -0.170 5.170 7 N -0.140 5.140 8 C 0.063 3.937 9 H 0.086 0.914 10 C -0.156 4.156 11 C -0.149 4.149 12 C -0.171 4.171 13 C -0.011 4.011 14 H 0.033 0.967 15 C -0.554 4.554 16 H 0.048 0.952 17 C -0.181 4.181 18 N -0.589 5.589 19 Si 0.768 3.232 20 H -0.175 1.175 21 H -0.223 1.223 22 H -0.181 1.181 23 C -0.098 4.098 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.058 0.942 27 H 0.100 0.900 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.210 0.790 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 1.986 10.827 -16.340 19.702 hybrid contribution -0.859 -0.560 -0.023 1.025 sum 1.127 10.267 -16.364 19.351 Atomic orbital electron populations 1.21808 0.94729 1.01083 1.02133 1.19413 0.95231 0.95492 0.92857 1.21773 1.00640 0.94864 1.02067 1.20342 1.08558 1.00709 0.95714 1.24049 0.99774 0.98913 0.92082 1.77375 1.14757 1.03335 1.21560 1.48946 1.38750 1.21987 1.04292 1.22045 0.90691 0.82443 0.98485 0.91435 1.22705 0.95793 1.00253 0.96826 1.22555 0.99906 0.95868 0.96576 1.22840 0.99120 0.98267 0.96888 1.20119 0.94537 0.91959 0.94498 0.96724 1.21280 1.31186 1.09090 0.93851 0.95224 1.25823 0.96686 0.97790 0.97841 1.70047 1.43596 1.22911 1.22307 0.85898 0.78388 0.79257 0.79652 1.17536 1.22260 1.18087 1.22807 1.00377 0.98030 0.88585 0.93023 0.90890 0.94233 0.89967 0.93317 0.91110 0.93010 0.78972 0.88949 0.89046 0.90241 0.88518 0.93005 0.91966 0.92461 0.79019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.08 71.98 0.65 -2.00 16 2 C -0.01 -0.21 3.28 -11.54 -0.04 -0.24 16 3 C -0.14 -2.28 9.08 71.98 0.65 -1.62 16 4 C -0.24 -6.75 4.80 -20.14 -0.10 -6.85 16 5 C 0.04 1.20 11.45 85.24 0.98 2.17 16 6 N -0.35 -14.51 12.58 -57.02 -0.72 -15.23 16 7 N -0.36 -13.78 3.43 -324.05 -1.11 -14.89 16 8 C 0.17 6.65 3.65 45.72 0.17 6.81 16 9 H 0.07 3.13 7.37 -2.39 -0.02 3.12 16 10 C -0.12 -3.38 5.93 31.67 0.19 -3.19 16 11 C -0.11 -2.99 6.68 31.88 0.21 -2.78 16 12 C -0.13 -5.09 4.72 31.84 0.15 -4.94 16 13 C 0.01 0.41 2.19 -10.64 -0.02 0.38 16 14 H 0.01 0.75 6.90 -2.39 -0.02 0.73 16 15 C -0.52 -30.15 8.95 25.60 0.23 -29.92 16 16 H 0.03 1.94 7.57 -2.91 -0.02 1.92 16 17 C 0.02 0.94 5.46 84.66 0.46 1.40 16 18 N -0.95 -60.52 13.96 21.45 0.30 -60.22 16 19 Si 0.94 45.25 24.70 68.60 1.69 46.94 16 20 H -0.25 -11.00 7.11 99.48 0.71 -10.29 16 21 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 22 H -0.26 -11.76 6.37 99.48 0.63 -11.13 16 23 C 0.05 1.47 9.98 83.54 0.83 2.30 16 24 H 0.05 1.00 8.02 -2.39 -0.02 0.98 16 25 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.04 0.85 8.14 -2.38 -0.02 0.84 16 27 H 0.08 1.43 8.11 -2.38 -0.02 1.41 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.05 0.89 8.02 -2.39 -0.02 0.87 16 31 H 0.19 5.03 8.06 -2.91 -0.02 5.01 16 32 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.09 2.20 7.38 -2.39 -0.02 2.18 16 34 H 0.08 1.83 6.71 -2.39 -0.02 1.81 16 35 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.05 1.94 5.87 -2.38 -0.01 1.93 16 37 H 0.06 2.54 7.86 -2.39 -0.02 2.52 16 38 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 39 H 0.19 4.45 6.40 -2.91 -0.02 4.43 16 Total: -1.00 -72.16 305.92 5.47 -66.69 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.94 Total: 15.19 kcal Atomic # 6 Polarization: -42.86 SS G_CDS: 4.37 Total: -38.49 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -1.53 Total: -90.33 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.69 Total: 46.94 kcal Total: -72.16 5.47 -66.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167103413.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.282 kcal (2) G-P(sol) polarization free energy of solvation -72.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds