Wall clock time and date at job start Mon Mar 30 2020 06:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46708 * 2 1 4 4 H 1.08996 * 109.47443 * 54.99915 * 3 2 1 5 5 N 1.46893 * 109.47235 * 294.99539 * 3 2 1 6 6 C 1.50700 * 109.46842 * 174.99751 * 3 2 1 7 7 C 1.38129 * 120.04132 * 99.97530 * 6 3 2 8 8 C 1.38261 * 120.07750 * 179.97438 * 7 6 3 9 9 C 1.38303 * 120.14951 * 0.02623 * 8 7 6 10 10 C 1.38081 * 120.07766 * 359.74336 * 9 8 7 11 11 C 1.38895 * 120.04015 * 280.00103 * 6 3 2 12 12 N 1.39676 * 120.07036 * 359.95058 * 11 6 3 13 13 C 1.46900 * 111.00075 * 243.95381 * 12 11 6 14 14 C 1.46906 * 110.99812 * 120.00424 * 12 11 6 15 15 C 1.50699 * 109.47140 * 189.99960 * 14 12 11 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 12 17 17 C 1.37873 * 119.99861 * 180.02562 * 15 14 12 18 18 N 1.31522 * 120.00244 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99980 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47229 * 89.99965 * 19 17 15 21 21 H 1.48500 * 109.46876 * 209.99805 * 19 17 15 22 22 H 1.48499 * 109.47161 * 329.99530 * 19 17 15 23 23 H 1.09000 * 109.46752 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47373 * 300.00192 * 1 2 3 25 25 H 1.08996 * 109.47062 * 60.00340 * 1 2 3 26 26 H 1.08999 * 109.47373 * 239.99808 * 2 1 3 27 27 H 1.09004 * 109.47006 * 119.99961 * 2 1 3 28 28 H 1.00902 * 111.00184 * 176.05103 * 5 3 2 29 29 H 1.00901 * 111.00475 * 300.00530 * 5 3 2 30 30 H 1.08008 * 119.95818 * 0.02562 * 7 6 3 31 31 H 1.08006 * 119.92379 * 180.02562 * 8 7 6 32 32 H 1.08001 * 119.96145 * 179.97438 * 9 8 7 33 33 H 1.07995 * 120.03958 * 180.27448 * 10 9 8 34 34 H 1.08996 * 109.47030 * 296.04917 * 13 12 11 35 35 H 1.08999 * 109.46702 * 56.05055 * 13 12 11 36 36 H 1.08996 * 109.46890 * 176.04924 * 13 12 11 37 37 H 1.09004 * 109.47040 * 309.99898 * 14 12 11 38 38 H 1.09000 * 109.47033 * 69.99850 * 14 12 11 39 39 H 0.96992 * 120.00038 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6514 2.0992 -1.2552 6 6 3.5418 1.4444 0.1239 7 6 4.3281 1.6180 -0.9984 8 6 5.7060 1.6204 -0.8856 9 6 6.3020 1.4484 0.3506 10 6 5.5221 1.2791 1.4773 11 6 4.1372 1.2709 1.3667 12 7 3.3452 1.0955 2.5038 13 6 3.5275 2.2055 3.4486 14 6 3.6262 -0.1949 3.1472 15 6 2.5953 -0.4594 4.2141 16 1 1.8102 0.2595 4.3963 17 6 2.6551 -1.6185 4.9582 18 7 3.6116 -2.4937 4.7366 19 14 1.3769 -1.9467 6.2803 20 1 0.2295 -2.6804 5.6882 21 1 1.9822 -2.7644 7.3620 22 1 0.9027 -0.6562 6.8416 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.9204 3.0717 -1.2529 29 1 2.0422 1.6179 -2.0512 30 1 3.8658 1.7530 -1.9652 31 1 6.3184 1.7568 -1.7647 32 1 7.3787 1.4504 0.4352 33 1 5.9881 1.1493 2.4429 34 1 4.5563 2.2111 3.8085 35 1 3.3130 3.1489 2.9465 36 1 2.8482 2.0801 4.2918 37 1 3.5888 -0.9887 2.4010 38 1 4.6178 -0.1674 3.5989 39 1 3.6539 -3.3089 5.2604 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168134145.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:55 Heat of formation + Delta-G solvation = 24.268865 kcal Electronic energy + Delta-G solvation = -18644.799835 eV Core-core repulsion = 15972.860865 eV Total energy + Delta-G solvation = -2671.938970 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.73704 -36.30636 -35.62746 -32.59967 -31.07876 -29.75548 -29.43759 -27.22446 -25.20388 -24.75217 -22.58696 -21.66058 -20.11756 -19.82304 -16.81147 -16.18529 -15.91114 -15.24552 -14.93049 -14.62312 -13.94376 -13.76037 -13.67590 -13.47990 -12.93037 -12.68922 -12.23962 -12.06988 -11.89011 -11.56732 -11.44123 -11.02161 -10.95372 -10.81205 -10.58898 -10.57014 -10.46796 -10.21916 -10.00236 -9.31710 -8.63395 -8.48578 -8.41882 -8.08177 -7.44706 -6.06400 -4.08425 1.69303 1.70903 3.30498 3.36688 3.39703 4.06866 4.39249 4.82650 4.85982 5.12706 5.16325 5.29498 5.35395 5.55491 5.64135 5.74040 5.83889 5.95244 6.04021 6.17837 6.18883 6.23376 6.34658 6.40220 6.57927 6.65616 6.69543 6.77677 6.84776 6.91022 6.94098 7.11502 7.26579 7.37609 7.44889 7.64593 7.80033 8.00888 8.11989 8.56321 8.98526 9.55980 11.04242 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020795 B = 0.007572 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.123976 B = 3697.063169 C = 4497.099124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C 0.146 3.854 4 H 0.099 0.901 5 N -0.841 5.841 6 C -0.103 4.103 7 C -0.126 4.126 8 C -0.134 4.134 9 C -0.118 4.118 10 C -0.148 4.148 11 C 0.121 3.879 12 N -0.509 5.509 13 C 0.043 3.957 14 C 0.202 3.798 15 C -0.508 4.508 16 H 0.065 0.935 17 C 0.057 3.943 18 N -0.897 5.897 19 Si 0.898 3.102 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.273 1.273 23 H 0.043 0.957 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.336 0.664 29 H 0.333 0.667 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.016 0.984 35 H 0.045 0.955 36 H 0.079 0.921 37 H 0.030 0.970 38 H -0.006 1.006 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.041 8.362 -10.156 13.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.034 3.966 4 H 0.117 0.883 5 N -0.370 5.370 6 C -0.106 4.106 7 C -0.145 4.145 8 C -0.153 4.153 9 C -0.137 4.137 10 C -0.168 4.168 11 C 0.026 3.974 12 N -0.230 5.230 13 C -0.104 4.104 14 C 0.078 3.922 15 C -0.547 4.547 16 H 0.083 0.917 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.214 1.214 22 H -0.198 1.198 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.148 0.852 29 H 0.146 0.854 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.137 0.863 34 H 0.035 0.965 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.048 0.952 38 H 0.012 0.988 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.179 7.992 -9.995 12.799 hybrid contribution 1.544 -0.268 0.910 1.813 sum 1.365 7.725 -9.085 12.003 Atomic orbital electron populations 1.21604 0.95625 1.00474 1.01748 1.21465 0.96113 0.94506 1.02320 1.20259 0.87756 0.96407 0.92156 0.88287 1.59080 1.67032 1.06428 1.04430 1.20798 0.97791 0.99917 0.92086 1.20799 0.93727 1.02432 0.97563 1.20940 0.94647 1.02498 0.97166 1.20955 0.99249 1.00759 0.92739 1.21852 0.94990 1.01002 0.98953 1.19011 0.89793 0.95883 0.92685 1.59897 1.52462 1.05173 1.05485 1.22225 0.99631 0.92292 0.96219 1.19779 0.95557 0.83294 0.93539 1.21115 1.11966 1.04639 1.16953 0.91682 1.24976 0.95901 0.96024 0.97572 1.69963 1.32468 1.10170 1.41027 0.86501 0.81452 0.78285 0.81206 1.20554 1.21356 1.19824 0.93811 0.92858 0.92575 0.93532 0.89641 0.85207 0.85372 0.86761 0.86809 0.86817 0.86350 0.96497 0.93627 0.90208 0.95161 0.98785 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.80 37.16 0.36 -1.77 16 2 C -0.11 -1.80 5.56 -26.73 -0.15 -1.95 16 3 C 0.15 2.29 2.61 -68.87 -0.18 2.11 16 4 H 0.10 1.75 7.80 -51.93 -0.40 1.34 16 5 N -0.84 -10.57 8.16 -5.66 -0.05 -10.61 16 6 C -0.10 -1.71 5.09 -104.42 -0.53 -2.24 16 7 C -0.13 -1.80 9.24 -39.61 -0.37 -2.16 16 8 C -0.13 -1.87 10.04 -39.55 -0.40 -2.26 16 9 C -0.12 -1.80 10.04 -39.61 -0.40 -2.20 16 10 C -0.15 -2.66 8.70 -39.38 -0.34 -3.01 16 11 C 0.12 2.31 4.64 -83.78 -0.39 1.92 16 12 N -0.51 -10.70 3.66 -180.32 -0.66 -11.36 16 13 C 0.04 0.83 9.09 60.06 0.55 1.38 16 14 C 0.20 5.13 4.16 -4.97 -0.02 5.11 16 15 C -0.51 -13.86 8.52 -34.44 -0.29 -14.15 16 16 H 0.07 1.75 7.10 -52.48 -0.37 1.38 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -26.33 13.29 55.43 0.74 -25.59 16 19 Si 0.90 21.39 29.54 -169.99 -5.02 16.36 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.81 7.75 -51.93 -0.40 0.40 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.09 1.77 7.50 -51.93 -0.39 1.38 16 28 H 0.34 3.78 9.06 -39.29 -0.36 3.43 16 29 H 0.33 3.77 7.29 -39.29 -0.29 3.49 16 30 H 0.11 1.32 6.25 -52.48 -0.33 0.99 16 31 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 32 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.12 2.20 7.16 -52.49 -0.38 1.83 16 34 H 0.02 0.32 7.46 -51.93 -0.39 -0.07 16 35 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 36 H 0.08 1.60 6.86 -51.93 -0.36 1.24 16 37 H 0.03 0.85 7.76 -51.93 -0.40 0.44 16 38 H -0.01 -0.15 7.49 -51.93 -0.39 -0.54 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 315.37 15.07 4.75 4.75 Total: -1.00 -28.70 315.37 -8.61 -37.32 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.12 Total: 6.87 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -2.25 Total: -17.74 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.03 Total: -47.56 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.70 -8.61 -37.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168134145.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.588 kcal (2) G-P(sol) polarization free energy of solvation -28.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds