Wall clock time and date at job start Mon Mar 30 2020 06:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46708 * 2 1 4 4 H 1.08996 * 109.47443 * 54.99915 * 3 2 1 5 5 N 1.46893 * 109.47235 * 294.99539 * 3 2 1 6 6 C 1.50700 * 109.46842 * 174.99751 * 3 2 1 7 7 C 1.38129 * 120.04132 * 99.97530 * 6 3 2 8 8 C 1.38261 * 120.07750 * 179.97438 * 7 6 3 9 9 C 1.38303 * 120.14951 * 0.02623 * 8 7 6 10 10 C 1.38081 * 120.07766 * 359.74336 * 9 8 7 11 11 C 1.38895 * 120.04015 * 280.00103 * 6 3 2 12 12 N 1.39676 * 120.07036 * 359.95058 * 11 6 3 13 13 C 1.46900 * 111.00075 * 243.95381 * 12 11 6 14 14 C 1.46906 * 110.99812 * 120.00424 * 12 11 6 15 15 C 1.50699 * 109.47140 * 189.99960 * 14 12 11 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 12 17 17 C 1.37873 * 119.99861 * 180.02562 * 15 14 12 18 18 N 1.31522 * 120.00244 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99980 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47229 * 89.99965 * 19 17 15 21 21 H 1.48500 * 109.46876 * 209.99805 * 19 17 15 22 22 H 1.48499 * 109.47161 * 329.99530 * 19 17 15 23 23 H 1.09000 * 109.46752 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47373 * 300.00192 * 1 2 3 25 25 H 1.08996 * 109.47062 * 60.00340 * 1 2 3 26 26 H 1.08999 * 109.47373 * 239.99808 * 2 1 3 27 27 H 1.09004 * 109.47006 * 119.99961 * 2 1 3 28 28 H 1.00902 * 111.00184 * 176.05103 * 5 3 2 29 29 H 1.00901 * 111.00475 * 300.00530 * 5 3 2 30 30 H 1.08008 * 119.95818 * 0.02562 * 7 6 3 31 31 H 1.08006 * 119.92379 * 180.02562 * 8 7 6 32 32 H 1.08001 * 119.96145 * 179.97438 * 9 8 7 33 33 H 1.07995 * 120.03958 * 180.27448 * 10 9 8 34 34 H 1.08996 * 109.47030 * 296.04917 * 13 12 11 35 35 H 1.08999 * 109.46702 * 56.05055 * 13 12 11 36 36 H 1.08996 * 109.46890 * 176.04924 * 13 12 11 37 37 H 1.09004 * 109.47040 * 309.99898 * 14 12 11 38 38 H 1.09000 * 109.47033 * 69.99850 * 14 12 11 39 39 H 0.96992 * 120.00038 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6514 2.0992 -1.2552 6 6 3.5418 1.4444 0.1239 7 6 4.3281 1.6180 -0.9984 8 6 5.7060 1.6204 -0.8856 9 6 6.3020 1.4484 0.3506 10 6 5.5221 1.2791 1.4773 11 6 4.1372 1.2709 1.3667 12 7 3.3452 1.0955 2.5038 13 6 3.5275 2.2055 3.4486 14 6 3.6262 -0.1949 3.1472 15 6 2.5953 -0.4594 4.2141 16 1 1.8102 0.2595 4.3963 17 6 2.6551 -1.6185 4.9582 18 7 3.6116 -2.4937 4.7366 19 14 1.3769 -1.9467 6.2803 20 1 0.2295 -2.6804 5.6882 21 1 1.9822 -2.7644 7.3620 22 1 0.9027 -0.6562 6.8416 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.9204 3.0717 -1.2529 29 1 2.0422 1.6179 -2.0512 30 1 3.8658 1.7530 -1.9652 31 1 6.3184 1.7568 -1.7647 32 1 7.3787 1.4504 0.4352 33 1 5.9881 1.1493 2.4429 34 1 4.5563 2.2111 3.8085 35 1 3.3130 3.1489 2.9465 36 1 2.8482 2.0801 4.2918 37 1 3.5888 -0.9887 2.4010 38 1 4.6178 -0.1674 3.5989 39 1 3.6539 -3.3089 5.2604 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168134145.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:55 Heat of formation + Delta-G solvation = 6.410272 kcal Electronic energy + Delta-G solvation = -18645.574242 eV Core-core repulsion = 15972.860865 eV Total energy + Delta-G solvation = -2672.713377 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.08576 -37.81830 -36.93452 -34.69352 -32.34481 -30.99430 -30.84604 -29.15411 -26.77051 -26.14875 -24.31265 -23.02502 -21.62668 -21.10855 -18.65174 -17.77081 -17.16468 -16.80602 -16.44669 -16.17642 -15.44761 -15.22405 -15.07269 -14.86299 -14.48045 -14.05223 -13.92833 -13.58429 -13.31596 -13.04798 -12.92475 -12.80957 -12.65988 -12.44524 -12.12518 -12.01809 -11.93504 -11.79624 -11.57028 -11.35495 -10.63846 -9.79643 -9.63798 -9.40617 -9.13981 -8.22194 -6.32619 0.41676 0.44450 1.39947 1.41488 1.52242 2.38538 2.80443 3.10387 3.25117 3.75811 3.88136 4.01329 4.16394 4.28995 4.35451 4.39766 4.52360 4.54121 4.65823 4.75221 4.83388 4.92534 5.00779 5.06244 5.07477 5.14148 5.20108 5.33059 5.41589 5.54852 5.57412 5.58781 5.63242 5.71581 5.99692 6.08865 6.16955 6.32733 6.71924 6.82055 6.82356 7.37024 8.88852 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020795 B = 0.007572 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.123976 B = 3697.063169 C = 4497.099124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.103 4.103 3 C 0.158 3.842 4 H 0.076 0.924 5 N -0.831 5.831 6 C -0.111 4.111 7 C -0.119 4.119 8 C -0.122 4.122 9 C -0.119 4.119 10 C -0.170 4.170 11 C 0.083 3.917 12 N -0.506 5.506 13 C 0.047 3.953 14 C 0.226 3.774 15 C -0.520 4.520 16 H 0.066 0.934 17 C 0.003 3.997 18 N -0.934 5.934 19 Si 0.968 3.032 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.262 1.262 23 H 0.044 0.956 24 H 0.040 0.960 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.039 0.961 28 H 0.348 0.652 29 H 0.345 0.655 30 H 0.150 0.850 31 H 0.155 0.845 32 H 0.138 0.862 33 H 0.097 0.903 34 H 0.012 0.988 35 H 0.071 0.929 36 H 0.066 0.934 37 H -0.005 1.005 38 H -0.038 1.038 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.574 9.588 -12.218 15.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.141 4.141 3 C 0.046 3.954 4 H 0.094 0.906 5 N -0.361 5.361 6 C -0.114 4.114 7 C -0.137 4.137 8 C -0.140 4.140 9 C -0.138 4.138 10 C -0.190 4.190 11 C -0.011 4.011 12 N -0.227 5.227 13 C -0.100 4.100 14 C 0.102 3.898 15 C -0.558 4.558 16 H 0.084 0.916 17 C -0.195 4.195 18 N -0.575 5.575 19 Si 0.792 3.208 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.186 1.186 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.093 0.907 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.162 0.838 29 H 0.160 0.840 30 H 0.168 0.832 31 H 0.173 0.827 32 H 0.156 0.844 33 H 0.115 0.885 34 H 0.030 0.970 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.013 0.987 38 H -0.020 1.020 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.644 9.251 -12.079 15.228 hybrid contribution 1.769 -0.607 1.431 2.355 sum 1.125 8.644 -10.649 13.762 Atomic orbital electron populations 1.21547 0.94523 1.00698 1.01975 1.21362 0.97041 0.95201 1.00496 1.19941 0.87160 0.95350 0.92980 0.90586 1.58957 1.66882 1.07058 1.03251 1.20972 0.98518 1.00018 0.91851 1.21196 0.93964 1.00568 0.98015 1.21421 0.94944 0.99914 0.97740 1.21262 1.00386 0.99768 0.92380 1.21817 0.95021 1.02827 0.99378 1.19190 0.90254 0.98917 0.92758 1.59736 1.53278 1.03594 1.06066 1.22204 0.98984 0.92857 0.95919 1.19275 0.93476 0.84930 0.92148 1.21417 1.12188 1.04824 1.17419 0.91600 1.25894 0.97957 0.95717 0.99910 1.70098 1.34377 1.10711 1.42281 0.85405 0.78676 0.78511 0.78196 1.19902 1.20841 1.18642 0.93651 0.94090 0.90711 0.92506 0.94263 0.83846 0.84031 0.83225 0.82745 0.84407 0.88527 0.96967 0.90990 0.91473 0.98710 1.02011 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 9.80 71.98 0.71 -3.28 16 2 C -0.10 -3.50 5.56 30.60 0.17 -3.33 16 3 C 0.16 4.82 2.61 44.17 0.12 4.94 16 4 H 0.08 2.69 7.80 -2.39 -0.02 2.67 16 5 N -0.83 -18.43 8.16 -171.82 -1.40 -19.83 16 6 C -0.11 -3.56 5.09 -19.73 -0.10 -3.66 16 7 C -0.12 -2.98 9.24 22.25 0.21 -2.78 16 8 C -0.12 -2.94 10.04 22.29 0.22 -2.71 16 9 C -0.12 -3.44 10.04 22.25 0.22 -3.21 16 10 C -0.17 -6.30 8.70 22.40 0.19 -6.11 16 11 C 0.08 3.26 4.64 38.21 0.18 3.44 16 12 N -0.51 -22.40 3.66 -724.42 -2.65 -25.05 16 13 C 0.05 1.89 9.09 127.69 1.16 3.05 16 14 C 0.23 12.33 4.16 85.56 0.36 12.68 16 15 C -0.52 -29.61 8.52 25.60 0.22 -29.40 16 16 H 0.07 3.66 7.10 -2.91 -0.02 3.64 16 17 C 0.00 0.19 5.46 84.65 0.46 0.65 16 18 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 19 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 23 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.07 2.00 7.75 -2.39 -0.02 1.98 16 26 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.04 1.70 7.50 -2.38 -0.02 1.68 16 28 H 0.35 6.64 9.06 -89.69 -0.81 5.83 16 29 H 0.34 6.42 7.29 -89.69 -0.65 5.77 16 30 H 0.15 2.68 6.25 -2.91 -0.02 2.66 16 31 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.14 3.23 8.06 -2.91 -0.02 3.20 16 33 H 0.10 3.88 7.16 -2.91 -0.02 3.86 16 34 H 0.01 0.48 7.46 -2.39 -0.02 0.46 16 35 H 0.07 2.45 8.12 -2.39 -0.02 2.43 16 36 H 0.07 2.79 6.86 -2.39 -0.02 2.78 16 37 H -0.01 -0.32 7.76 -2.38 -0.02 -0.33 16 38 H -0.04 -2.24 7.49 -2.39 -0.02 -2.26 16 39 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -65.38 315.37 1.94 -63.44 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -0.43 Total: 21.14 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 4.11 Total: -29.73 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -3.77 Total: -101.50 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -65.38 1.94 -63.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168134145.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.853 kcal (2) G-P(sol) polarization free energy of solvation -65.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds