Wall clock time and date at job start Mon Mar 30 2020 06:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46777 * 2 1 4 4 H 1.08998 * 109.47608 * 57.85197 * 3 2 1 5 5 C 1.53000 * 109.47035 * 177.85266 * 3 2 1 6 6 N 1.46905 * 109.47236 * 297.85124 * 3 2 1 7 7 C 1.46901 * 110.99905 * 291.72672 * 6 3 2 8 8 C 1.50697 * 109.47073 * 75.27814 * 7 6 3 9 9 H 1.08008 * 120.00444 * 5.84804 * 8 7 6 10 10 C 1.37880 * 120.00004 * 185.85103 * 8 7 6 11 11 N 1.31507 * 120.00049 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99889 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47145 * 89.99968 * 12 10 8 14 14 H 1.48503 * 109.46952 * 209.99462 * 12 10 8 15 15 H 1.48504 * 109.47548 * 329.99809 * 12 10 8 16 16 C 1.46897 * 111.00024 * 167.76914 * 6 3 2 17 17 C 1.50692 * 109.47554 * 292.63810 * 16 6 3 18 18 C 1.38228 * 119.62300 * 96.51653 * 17 16 6 19 19 C 1.38621 * 119.16456 * 180.02562 * 18 17 16 20 20 C 1.38665 * 118.42224 * 0.02562 * 19 18 17 21 21 C 1.38186 * 119.16607 * 0.27638 * 20 19 18 22 22 N 1.31853 * 119.61751 * 276.54163 * 17 16 6 23 23 H 1.08996 * 109.47490 * 64.62217 * 1 2 3 24 24 H 1.09002 * 109.46564 * 184.62147 * 1 2 3 25 25 H 1.08999 * 109.46990 * 304.61601 * 1 2 3 26 26 H 1.09001 * 109.47111 * 239.99965 * 2 1 3 27 27 H 1.09002 * 109.47163 * 119.99574 * 2 1 3 28 28 H 1.08997 * 109.47117 * 176.60694 * 5 3 2 29 29 H 1.08995 * 109.47521 * 296.61310 * 5 3 2 30 30 H 1.09004 * 109.47141 * 56.61654 * 5 3 2 31 31 H 1.09006 * 109.46892 * 195.27277 * 7 6 3 32 32 H 1.08993 * 109.47141 * 315.27605 * 7 6 3 33 33 H 0.97001 * 120.00395 * 179.97438 * 11 10 8 34 34 H 1.09003 * 109.46993 * 172.63316 * 16 6 3 35 35 H 1.09001 * 109.46715 * 52.63807 * 16 6 3 36 36 H 1.08006 * 120.41466 * 0.04701 * 18 17 16 37 37 H 1.08008 * 120.78867 * 180.02562 * 19 18 17 38 38 H 1.08005 * 120.42037 * 180.02562 * 20 19 18 39 39 H 1.07990 * 119.62200 * 179.70444 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6455 1.9674 0.8701 5 6 3.5690 1.4429 0.0541 6 7 1.5931 2.1199 -1.2246 7 6 2.2609 1.5623 -2.4082 8 6 1.6574 0.2221 -2.7408 9 1 0.7966 -0.1334 -2.1937 10 6 2.2039 -0.5504 -3.7437 11 7 3.2516 -0.1174 -4.4102 12 14 1.4562 -2.2119 -4.1554 13 1 0.4118 -2.0403 -5.1972 14 1 2.5163 -3.1199 -4.6624 15 1 0.8459 -2.7965 -2.9343 16 6 1.8087 3.5700 -1.1327 17 6 0.8951 4.1483 -0.0830 18 6 1.3716 4.3572 1.1976 19 6 0.5229 4.8891 2.1558 20 6 -0.7796 5.1919 1.7889 21 6 -1.1872 4.9497 0.4909 22 7 -0.3499 4.4486 -0.3966 23 1 -0.3634 0.4404 -0.9284 24 1 -0.3632 -1.0244 0.0828 25 1 -0.3633 0.5838 0.8457 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.9344 2.4680 -0.0067 29 1 3.8996 0.9942 0.9907 30 1 3.9623 0.8669 -0.7836 31 1 2.1296 2.2394 -3.2523 32 1 3.3242 1.4408 -2.2019 33 1 3.6364 -0.6610 -5.1154 34 1 1.5927 4.0313 -2.0964 35 1 2.8456 3.7666 -0.8600 36 1 2.3926 4.1095 1.4483 37 1 0.8679 5.0636 3.1643 38 1 -1.4682 5.6079 2.5095 39 1 -2.2013 5.1782 0.1984 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181123103.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:53 Heat of formation + Delta-G solvation = 43.025183 kcal Electronic energy + Delta-G solvation = -18781.654342 eV Core-core repulsion = 16110.528707 eV Total energy + Delta-G solvation = -2671.125635 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.04503 -37.81345 -33.03746 -32.56673 -32.13827 -30.82571 -28.93414 -27.31916 -24.93482 -23.36672 -23.17723 -21.83952 -21.28752 -18.49546 -16.78236 -16.40726 -15.98013 -15.36389 -15.17790 -14.58642 -14.07628 -13.53293 -13.34267 -13.03118 -12.90227 -12.65984 -12.48171 -12.19736 -11.59175 -11.51894 -11.25728 -11.08091 -10.72315 -10.55701 -10.44720 -10.40439 -10.02226 -9.85276 -9.69940 -9.35019 -9.04900 -8.96919 -8.76560 -8.31596 -7.10415 -5.97338 -3.93080 1.30506 1.48133 3.35059 3.41631 3.44903 3.99432 4.47196 4.57864 4.88661 4.97301 5.14243 5.20715 5.33293 5.35858 5.63211 5.73907 5.80388 5.88601 5.95360 6.06228 6.18448 6.21218 6.30398 6.32865 6.36998 6.45834 6.54990 6.73113 6.83006 6.89928 6.93073 7.25381 7.33648 7.46663 7.59345 7.93095 8.18394 8.26342 8.34027 8.61728 9.12463 9.65816 11.12923 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.030394 B = 0.006321 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.005078 B = 4428.422103 C = 4468.669061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.133 4.133 3 C 0.093 3.907 4 H 0.055 0.945 5 C -0.186 4.186 6 N -0.516 5.516 7 C 0.184 3.816 8 C -0.500 4.500 9 H 0.081 0.919 10 C 0.053 3.947 11 N -0.899 5.899 12 Si 0.889 3.111 13 H -0.281 1.281 14 H -0.289 1.289 15 H -0.272 1.272 16 C 0.096 3.904 17 C 0.158 3.842 18 C -0.172 4.172 19 C -0.079 4.079 20 C -0.189 4.189 21 C 0.098 3.902 22 N -0.464 5.464 23 H 0.075 0.925 24 H 0.032 0.968 25 H 0.028 0.972 26 H 0.117 0.883 27 H 0.034 0.966 28 H 0.042 0.958 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.022 0.978 32 H 0.012 0.988 33 H 0.259 0.741 34 H 0.086 0.914 35 H 0.041 0.959 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.475 7.990 12.311 15.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.170 4.170 3 C -0.016 4.016 4 H 0.073 0.927 5 C -0.245 4.245 6 N -0.240 5.240 7 C 0.059 3.941 8 C -0.539 4.539 9 H 0.099 0.901 10 C -0.148 4.148 11 N -0.539 5.539 12 Si 0.718 3.282 13 H -0.207 1.207 14 H -0.215 1.215 15 H -0.197 1.197 16 C -0.033 4.033 17 C 0.020 3.980 18 C -0.192 4.192 19 C -0.105 4.105 20 C -0.209 4.209 21 C -0.059 4.059 22 N -0.173 5.173 23 H 0.094 0.906 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.135 0.865 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.041 0.959 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.059 0.941 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.142 7.703 11.238 14.240 hybrid contribution 0.809 -0.552 0.806 1.268 sum -3.332 7.151 12.043 14.397 Atomic orbital electron populations 1.21600 0.96596 0.98996 1.01796 1.22033 0.95906 0.95880 1.03159 1.21525 0.91820 0.95796 0.92451 0.92677 1.22468 0.98976 1.00923 1.02124 1.62301 1.58920 0.98917 1.03875 1.19922 0.93228 0.95146 0.85791 1.21486 1.14062 1.01596 1.16735 0.90114 1.24985 0.95213 0.98286 0.96321 1.69956 1.22680 1.37968 1.23338 0.86624 0.78786 0.84017 0.78818 1.20745 1.21501 1.19720 1.20996 0.93792 0.91658 0.96828 1.21402 0.91194 0.92212 0.93206 1.22017 1.01271 1.01565 0.94351 1.21482 0.93683 0.96029 0.99313 1.22044 0.97012 1.03612 0.98215 1.22772 0.99132 0.94463 0.89541 1.67572 1.03259 1.09711 1.36735 0.90638 0.94856 0.95335 0.86499 0.94727 0.93896 0.93628 0.90405 0.95949 0.97046 0.93110 0.89591 0.94109 0.85300 0.85417 0.85428 0.83220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.00 37.16 0.33 -2.24 16 2 C -0.13 -2.65 4.86 -26.73 -0.13 -2.78 16 3 C 0.09 1.77 2.19 -67.71 -0.15 1.63 16 4 H 0.06 1.00 5.87 -51.93 -0.31 0.69 16 5 C -0.19 -3.35 8.40 37.16 0.31 -3.03 16 6 N -0.52 -10.86 3.86 -229.52 -0.88 -11.74 16 7 C 0.18 4.57 4.49 -4.98 -0.02 4.55 16 8 C -0.50 -13.33 6.56 -34.44 -0.23 -13.56 16 9 H 0.08 2.12 4.13 -52.48 -0.22 1.90 16 10 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 11 N -0.90 -26.06 13.29 55.43 0.74 -25.33 16 12 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 16 C 0.10 1.78 5.18 -4.98 -0.03 1.75 16 17 C 0.16 2.66 5.67 -82.59 -0.47 2.20 16 18 C -0.17 -2.41 8.20 -39.44 -0.32 -2.73 16 19 C -0.08 -0.94 10.17 -39.28 -0.40 -1.33 16 20 C -0.19 -2.18 10.11 -39.44 -0.40 -2.58 16 21 C 0.10 1.35 11.18 -17.54 -0.20 1.15 16 22 N -0.46 -8.02 10.27 -9.48 -0.10 -8.12 16 23 H 0.07 1.65 6.42 -51.93 -0.33 1.32 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.12 2.71 4.77 -51.93 -0.25 2.46 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.71 6.54 -51.93 -0.34 0.37 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.62 6.20 -51.93 -0.32 1.30 16 31 H 0.02 0.61 7.72 -51.93 -0.40 0.21 16 32 H 0.01 0.31 5.43 -51.93 -0.28 0.03 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.09 1.67 7.80 -51.93 -0.40 1.26 16 35 H 0.04 0.70 6.31 -51.93 -0.33 0.37 16 36 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 37 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 38 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 39 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 304.06 15.07 4.58 4.58 Total: -1.00 -29.33 304.06 -8.17 -37.50 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.70 Total: 2.37 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -1.79 Total: -15.63 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.25 Total: -45.19 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.33 -8.17 -37.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181123103.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.523 kcal (2) G-P(sol) polarization free energy of solvation -29.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds