Wall clock time and date at job start Mon Mar 30 2020 06:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46777 * 2 1 4 4 H 1.08998 * 109.47608 * 57.85197 * 3 2 1 5 5 C 1.53000 * 109.47035 * 177.85266 * 3 2 1 6 6 N 1.46905 * 109.47236 * 297.85124 * 3 2 1 7 7 C 1.46901 * 110.99905 * 291.72672 * 6 3 2 8 8 C 1.50697 * 109.47073 * 75.27814 * 7 6 3 9 9 H 1.08008 * 120.00444 * 5.84804 * 8 7 6 10 10 C 1.37880 * 120.00004 * 185.85103 * 8 7 6 11 11 N 1.31507 * 120.00049 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99889 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47145 * 89.99968 * 12 10 8 14 14 H 1.48503 * 109.46952 * 209.99462 * 12 10 8 15 15 H 1.48504 * 109.47548 * 329.99809 * 12 10 8 16 16 C 1.46897 * 111.00024 * 167.76914 * 6 3 2 17 17 C 1.50692 * 109.47554 * 292.63810 * 16 6 3 18 18 C 1.38228 * 119.62300 * 96.51653 * 17 16 6 19 19 C 1.38621 * 119.16456 * 180.02562 * 18 17 16 20 20 C 1.38665 * 118.42224 * 0.02562 * 19 18 17 21 21 C 1.38186 * 119.16607 * 0.27638 * 20 19 18 22 22 N 1.31853 * 119.61751 * 276.54163 * 17 16 6 23 23 H 1.08996 * 109.47490 * 64.62217 * 1 2 3 24 24 H 1.09002 * 109.46564 * 184.62147 * 1 2 3 25 25 H 1.08999 * 109.46990 * 304.61601 * 1 2 3 26 26 H 1.09001 * 109.47111 * 239.99965 * 2 1 3 27 27 H 1.09002 * 109.47163 * 119.99574 * 2 1 3 28 28 H 1.08997 * 109.47117 * 176.60694 * 5 3 2 29 29 H 1.08995 * 109.47521 * 296.61310 * 5 3 2 30 30 H 1.09004 * 109.47141 * 56.61654 * 5 3 2 31 31 H 1.09006 * 109.46892 * 195.27277 * 7 6 3 32 32 H 1.08993 * 109.47141 * 315.27605 * 7 6 3 33 33 H 0.97001 * 120.00395 * 179.97438 * 11 10 8 34 34 H 1.09003 * 109.46993 * 172.63316 * 16 6 3 35 35 H 1.09001 * 109.46715 * 52.63807 * 16 6 3 36 36 H 1.08006 * 120.41466 * 0.04701 * 18 17 16 37 37 H 1.08008 * 120.78867 * 180.02562 * 19 18 17 38 38 H 1.08005 * 120.42037 * 180.02562 * 20 19 18 39 39 H 1.07990 * 119.62200 * 179.70444 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6455 1.9674 0.8701 5 6 3.5690 1.4429 0.0541 6 7 1.5931 2.1199 -1.2246 7 6 2.2609 1.5623 -2.4082 8 6 1.6574 0.2221 -2.7408 9 1 0.7966 -0.1334 -2.1937 10 6 2.2039 -0.5504 -3.7437 11 7 3.2516 -0.1174 -4.4102 12 14 1.4562 -2.2119 -4.1554 13 1 0.4118 -2.0403 -5.1972 14 1 2.5163 -3.1199 -4.6624 15 1 0.8459 -2.7965 -2.9343 16 6 1.8087 3.5700 -1.1327 17 6 0.8951 4.1483 -0.0830 18 6 1.3716 4.3572 1.1976 19 6 0.5229 4.8891 2.1558 20 6 -0.7796 5.1919 1.7889 21 6 -1.1872 4.9497 0.4909 22 7 -0.3499 4.4486 -0.3966 23 1 -0.3634 0.4404 -0.9284 24 1 -0.3632 -1.0244 0.0828 25 1 -0.3633 0.5838 0.8457 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.9344 2.4680 -0.0067 29 1 3.8996 0.9942 0.9907 30 1 3.9623 0.8669 -0.7836 31 1 2.1296 2.2394 -3.2523 32 1 3.3242 1.4408 -2.2019 33 1 3.6364 -0.6610 -5.1154 34 1 1.5927 4.0313 -2.0964 35 1 2.8456 3.7666 -0.8600 36 1 2.3926 4.1095 1.4483 37 1 0.8679 5.0636 3.1643 38 1 -1.4682 5.6079 2.5095 39 1 -2.2013 5.1782 0.1984 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181123103.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:53 Heat of formation + Delta-G solvation = 25.048769 kcal Electronic energy + Delta-G solvation = -18782.433858 eV Core-core repulsion = 16110.528707 eV Total energy + Delta-G solvation = -2671.905151 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.18278 -39.37413 -34.75648 -34.28628 -33.22507 -32.19208 -30.55689 -29.03485 -26.47805 -24.94469 -24.30866 -23.50594 -22.61266 -20.10349 -18.65094 -17.53499 -17.22973 -16.84207 -16.57854 -16.19918 -15.71265 -14.95758 -14.68959 -14.42017 -14.29963 -14.10407 -14.02578 -13.75207 -13.05787 -13.01556 -12.91678 -12.68979 -12.47614 -12.33693 -12.15853 -12.00225 -11.77655 -11.41642 -11.22281 -10.87885 -10.65937 -10.43982 -10.18796 -9.84041 -8.79842 -8.08633 -6.10100 0.25912 0.49628 1.42576 1.43869 1.53803 2.45405 2.89324 3.22422 3.44836 3.51925 3.94155 4.08200 4.12353 4.24326 4.33805 4.38503 4.47728 4.56090 4.62795 4.69405 4.81245 4.86419 4.93628 4.94742 5.00022 5.10882 5.20576 5.28732 5.32660 5.34442 5.41994 5.57972 5.64480 5.85905 5.90153 5.90372 6.21736 6.52786 6.74346 7.02349 7.25804 7.52383 9.01416 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.030394 B = 0.006321 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.005078 B = 4428.422103 C = 4468.669061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.133 4.133 3 C 0.095 3.905 4 H 0.075 0.925 5 C -0.177 4.177 6 N -0.523 5.523 7 C 0.199 3.801 8 C -0.500 4.500 9 H 0.084 0.916 10 C 0.000 4.000 11 N -0.937 5.937 12 Si 0.951 3.049 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.261 1.261 16 C 0.099 3.901 17 C 0.131 3.869 18 C -0.174 4.174 19 C -0.074 4.074 20 C -0.173 4.173 21 C 0.082 3.918 22 N -0.508 5.508 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.041 0.959 31 H -0.013 1.013 32 H -0.004 1.004 33 H 0.259 0.741 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.142 0.858 37 H 0.166 0.834 38 H 0.167 0.833 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.589 8.234 15.596 18.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.171 4.171 3 C -0.013 4.013 4 H 0.093 0.907 5 C -0.236 4.236 6 N -0.248 5.248 7 C 0.073 3.927 8 C -0.538 4.538 9 H 0.102 0.898 10 C -0.197 4.197 11 N -0.579 5.579 12 Si 0.777 3.223 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.185 1.185 16 C -0.030 4.030 17 C -0.007 4.007 18 C -0.195 4.195 19 C -0.099 4.099 20 C -0.193 4.193 21 C -0.075 4.075 22 N -0.218 5.218 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.005 0.995 32 H 0.013 0.987 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.159 0.841 37 H 0.184 0.816 38 H 0.185 0.815 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.265 7.953 14.542 17.391 hybrid contribution 1.090 -0.513 -0.118 1.211 sum -4.175 7.439 14.424 16.758 Atomic orbital electron populations 1.21474 0.96138 0.99697 1.00731 1.21962 0.96285 0.96243 1.02575 1.21570 0.92516 0.95333 0.91919 0.90692 1.22354 0.98055 1.01245 1.01939 1.62168 1.58602 1.00594 1.03399 1.19565 0.92545 0.94039 0.86529 1.21793 1.13719 1.02070 1.16228 0.89828 1.25760 0.95697 1.01792 0.96446 1.70085 1.24244 1.39390 1.24166 0.85653 0.77920 0.80009 0.78759 1.20684 1.21259 1.18540 1.20909 0.95213 0.89938 0.96895 1.21056 0.91212 0.94583 0.93807 1.22142 1.02294 1.01553 0.93496 1.21945 0.93299 0.94294 1.00407 1.22475 0.97569 1.01462 0.97750 1.23230 0.99592 0.94337 0.90351 1.67433 1.04077 1.11351 1.38924 0.93723 0.93675 0.93804 0.89987 0.92216 0.92818 0.90883 0.94004 0.99506 0.98682 0.93241 0.92097 0.93135 0.84062 0.81601 0.81523 0.81239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.62 9.00 71.98 0.65 -3.97 16 2 C -0.13 -5.17 4.86 30.59 0.15 -5.02 16 3 C 0.09 3.55 2.19 44.91 0.10 3.64 16 4 H 0.08 2.54 5.87 -2.39 -0.01 2.53 16 5 C -0.18 -6.24 8.40 71.98 0.60 -5.63 16 6 N -0.52 -22.62 3.86 -880.08 -3.39 -26.02 16 7 C 0.20 10.44 4.49 85.56 0.38 10.82 16 8 C -0.50 -27.55 6.56 25.60 0.17 -27.38 16 9 H 0.08 4.49 4.13 -2.91 -0.01 4.48 16 10 C 0.00 0.00 5.46 84.66 0.46 0.46 16 11 N -0.94 -56.37 13.29 21.45 0.28 -56.08 16 12 Si 0.95 44.69 29.54 68.60 2.03 46.72 16 13 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 14 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 15 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 16 C 0.10 3.78 5.18 85.55 0.44 4.23 16 17 C 0.13 4.33 5.67 42.55 0.24 4.58 16 18 C -0.17 -4.43 8.20 22.36 0.18 -4.24 16 19 C -0.07 -1.42 10.17 22.46 0.23 -1.19 16 20 C -0.17 -3.26 10.11 22.36 0.23 -3.03 16 21 C 0.08 2.06 11.18 84.67 0.95 3.01 16 22 N -0.51 -17.39 10.27 -183.89 -1.89 -19.28 16 23 H 0.04 1.94 6.42 -2.39 -0.02 1.93 16 24 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.08 3.82 4.77 -2.39 -0.01 3.81 16 27 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.05 1.74 6.54 -2.39 -0.02 1.72 16 29 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.04 1.78 6.20 -2.38 -0.01 1.76 16 31 H -0.01 -0.77 7.72 -2.38 -0.02 -0.79 16 32 H 0.00 -0.24 5.43 -2.39 -0.01 -0.26 16 33 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 34 H 0.06 2.55 7.80 -2.39 -0.02 2.53 16 35 H 0.05 1.78 6.31 -2.39 -0.02 1.76 16 36 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 37 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 38 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 39 H 0.17 3.33 8.06 -2.92 -0.02 3.31 16 Total: -1.00 -66.43 304.06 2.84 -63.58 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 1.03 Total: 14.81 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: 4.78 Total: -23.73 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -5.00 Total: -101.38 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -66.43 2.84 -63.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181123103.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.631 kcal (2) G-P(sol) polarization free energy of solvation -66.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds