Wall clock time and date at job start Mon Mar 30 2020 05:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33021 * 126.26799 * 2 1 4 4 C 1.31013 * 109.98214 * 180.02562 * 3 2 1 5 5 C 1.50695 * 125.17856 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46921 * 59.98160 * 5 4 3 7 7 C 1.53002 * 109.47266 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47309 * 59.99643 * 7 6 5 9 9 C 1.53008 * 109.47136 * 300.00154 * 8 7 6 10 10 C 1.52997 * 109.47286 * 299.98028 * 5 4 3 11 11 N 1.35075 * 109.64224 * 0.02562 * 4 3 2 12 12 C 1.46500 * 126.48122 * 179.97438 * 11 4 3 13 13 C 1.38436 * 107.03263 * 0.24019 * 11 4 3 14 14 C 1.40068 * 127.05817 * 179.74328 * 13 11 4 15 15 H 1.07990 * 119.99705 * 214.39941 * 14 13 11 16 16 C 1.40073 * 119.99791 * 34.39943 * 14 13 11 17 17 N 1.30854 * 120.00254 * 20.54869 * 16 14 13 18 18 Si 1.86799 * 119.99568 * 200.54121 * 16 14 13 19 19 H 1.48495 * 109.47236 * 90.00292 * 18 16 14 20 20 H 1.48507 * 109.46897 * 210.00297 * 18 16 14 21 21 H 1.48495 * 109.47367 * 329.99936 * 18 16 14 22 22 H 1.09002 * 109.47423 * 92.26607 * 1 2 3 23 23 H 1.09008 * 109.46861 * 212.26604 * 1 2 3 24 24 H 1.09000 * 109.47439 * 332.26361 * 1 2 3 25 25 H 1.09004 * 109.47385 * 179.97438 * 5 4 3 26 26 H 1.09002 * 109.46973 * 299.99491 * 6 5 4 27 27 H 1.09000 * 109.47685 * 59.99684 * 6 5 4 28 28 H 1.09002 * 109.46514 * 299.99533 * 7 6 5 29 29 H 1.08998 * 109.47537 * 180.02562 * 7 6 5 30 30 H 1.08998 * 109.46817 * 180.02562 * 8 7 6 31 31 H 1.08996 * 109.47208 * 59.99793 * 8 7 6 32 32 H 1.08994 * 109.46921 * 300.00432 * 9 8 7 33 33 H 1.08993 * 109.46956 * 180.02562 * 9 8 7 34 34 H 1.08996 * 109.47567 * 299.99851 * 10 5 4 35 35 H 1.09002 * 109.47423 * 60.00010 * 10 5 4 36 36 H 1.08994 * 109.47455 * 90.00061 * 12 11 4 37 37 H 1.09001 * 109.47144 * 329.99546 * 12 11 4 38 38 H 1.09009 * 109.46990 * 210.00074 * 12 11 4 39 39 H 0.96995 * 119.99961 * 175.16691 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2939 1.0725 0.0000 4 6 3.5514 0.7051 -0.0006 5 6 4.7302 1.6439 -0.0002 6 6 4.6798 2.5253 1.2495 7 6 5.8762 3.4789 1.2496 8 6 5.8253 4.3613 0.0008 9 6 5.8757 3.4799 -1.2489 10 6 4.6798 2.5264 -1.2490 11 7 3.6305 -0.6433 -0.0015 12 6 4.8574 -1.4439 -0.0029 13 6 2.3329 -1.1256 -0.0071 14 6 1.9311 -2.4674 -0.0149 15 1 1.0383 -2.7606 -0.5470 16 6 2.6875 -3.4290 0.6673 17 7 3.5070 -3.0621 1.6192 18 14 2.5261 -5.2350 0.2182 19 1 3.5114 -5.5718 -0.8405 20 1 2.7858 -6.0688 1.4194 21 1 1.1530 -5.5002 -0.2809 22 1 -0.3634 -0.0406 -1.0269 23 1 -0.3633 -0.8690 0.5487 24 1 -0.3634 0.9096 0.4783 25 1 5.6547 1.0664 -0.0003 26 1 3.7554 3.1028 1.2497 27 1 4.7157 1.8966 2.1392 28 1 6.8009 2.9017 1.2492 29 1 5.8406 4.1065 2.1401 30 1 6.6779 5.0404 0.0007 31 1 4.9006 4.9385 0.0012 32 1 6.8003 2.9028 -1.2493 33 1 5.8399 4.1086 -2.1385 34 1 4.7157 1.8986 -2.1393 35 1 3.7554 3.1039 -1.2488 36 1 5.1624 -1.6432 1.0244 37 1 5.6477 -0.8968 -0.5170 38 1 4.6750 -2.3875 -0.5173 39 1 3.9780 -3.7323 2.1387 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221188096.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:36 Heat of formation + Delta-G solvation = 12.718119 kcal Electronic energy + Delta-G solvation = -18758.139871 eV Core-core repulsion = 16085.700023 eV Total energy + Delta-G solvation = -2672.439848 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.19026 -37.77477 -33.83563 -32.53660 -31.15921 -30.37517 -29.04310 -27.62444 -25.00796 -24.00401 -22.14106 -21.73056 -19.63913 -19.11758 -17.94560 -16.78921 -15.39244 -14.94190 -14.58684 -14.16961 -13.87887 -13.69700 -13.43662 -12.86247 -12.31147 -12.24937 -12.08613 -11.87284 -11.82309 -11.48150 -11.28006 -11.16693 -10.91276 -10.85817 -10.72295 -10.66317 -10.60941 -10.31340 -10.00024 -9.77376 -9.70304 -9.13300 -8.28773 -7.79894 -6.80896 -6.59013 -4.26241 2.92941 3.07336 3.11445 3.72416 3.95696 4.39999 4.49862 5.05274 5.10800 5.12042 5.17637 5.61298 5.65615 5.70246 5.84888 5.87793 5.92885 5.98035 5.99128 6.15768 6.27658 6.36483 6.41017 6.46370 6.59431 6.63149 6.63437 6.74939 6.80025 6.84817 6.90004 6.93070 7.07736 7.22287 7.49009 7.90997 7.97316 8.51540 8.75590 8.86800 9.19431 9.90362 10.24764 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.030736 B = 0.006591 C = 0.005947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.764019 B = 4247.343926 C = 4706.846136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 C -0.146 4.146 3 N -0.470 5.470 4 C 0.099 3.901 5 C 0.024 3.976 6 C -0.103 4.103 7 C -0.118 4.118 8 C -0.117 4.117 9 C -0.118 4.118 10 C -0.103 4.103 11 N -0.458 5.458 12 C 0.111 3.889 13 C 0.211 3.789 14 C -0.461 4.461 15 H 0.090 0.910 16 C 0.075 3.925 17 N -0.817 5.817 18 Si 0.905 3.095 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.262 1.262 22 H 0.033 0.967 23 H 0.052 0.948 24 H 0.040 0.960 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.043 0.957 38 H 0.065 0.935 39 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.057 5.712 -2.066 8.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.275 4.275 3 N -0.189 5.189 4 C -0.156 4.156 5 C 0.003 3.997 6 C -0.142 4.142 7 C -0.156 4.156 8 C -0.155 4.155 9 C -0.156 4.156 10 C -0.141 4.141 11 N -0.145 5.145 12 C -0.032 4.032 13 C 0.096 3.904 14 C -0.497 4.497 15 H 0.108 0.892 16 C -0.141 4.141 17 N -0.446 5.446 18 Si 0.730 3.270 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.186 1.186 22 H 0.052 0.948 23 H 0.071 0.929 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.108 6.426 -1.940 9.076 hybrid contribution 0.396 -1.980 -0.001 2.020 sum 6.505 4.446 -1.941 8.114 Atomic orbital electron populations 1.19442 0.90094 0.99847 0.98944 1.20632 0.94397 0.88271 1.24242 1.69075 0.99749 1.31885 1.18164 1.21853 0.93617 0.81646 1.18479 1.19088 0.92720 0.92951 0.94926 1.21499 0.98073 0.97187 0.97413 1.21563 0.98800 0.97871 0.97349 1.21522 1.01285 0.97674 0.95007 1.21552 0.98745 0.97876 0.97391 1.21488 0.98188 0.97206 0.97255 1.44909 1.06360 1.05648 1.57572 1.21586 0.84522 0.94741 1.02399 1.18509 0.81083 0.93914 0.96855 1.18441 1.10191 0.89486 1.31590 0.89190 1.25806 0.93519 1.01088 0.93641 1.69842 1.23615 1.36153 1.15039 0.86356 0.79855 0.82025 0.78726 1.19677 1.20561 1.18632 0.94801 0.92936 0.94058 0.91945 0.91196 0.92507 0.92511 0.92476 0.92773 0.91982 0.92522 0.92486 0.92694 0.91136 0.90867 0.93857 0.91625 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.57 10.24 36.00 0.37 -0.20 16 2 C -0.15 -3.89 7.25 -81.56 -0.59 -4.48 16 3 N -0.47 -12.15 11.17 -6.06 -0.07 -12.22 16 4 C 0.10 2.36 6.38 -154.96 -0.99 1.37 16 5 C 0.02 0.44 2.51 -91.78 -0.23 0.21 16 6 C -0.10 -1.79 5.18 -26.73 -0.14 -1.93 16 7 C -0.12 -1.60 5.92 -26.73 -0.16 -1.75 16 8 C -0.12 -1.46 5.92 -26.73 -0.16 -1.62 16 9 C -0.12 -1.55 5.92 -26.75 -0.16 -1.71 16 10 C -0.10 -1.72 5.18 -26.76 -0.14 -1.86 16 11 N -0.46 -11.50 3.14 -118.32 -0.37 -11.87 16 12 C 0.11 2.44 8.83 59.85 0.53 2.96 16 13 C 0.21 5.75 6.21 -83.68 -0.52 5.23 16 14 C -0.46 -12.22 8.86 -38.21 -0.34 -12.56 16 15 H 0.09 2.33 7.93 -52.49 -0.42 1.91 16 16 C 0.07 1.85 4.13 -17.28 -0.07 1.78 16 17 N -0.82 -20.61 10.32 55.56 0.57 -20.04 16 18 Si 0.91 18.59 29.61 -169.99 -5.03 13.55 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 22 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 1.16 8.05 -51.92 -0.42 0.74 16 24 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 1.13 6.68 -51.93 -0.35 0.78 16 26 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.07 1.64 6.98 -51.93 -0.36 1.28 16 37 H 0.04 0.80 7.02 -51.93 -0.36 0.44 16 38 H 0.06 1.47 6.96 -51.92 -0.36 1.11 16 39 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 LS Contribution 307.71 15.07 4.64 4.64 Total: -1.00 -28.85 307.71 -9.33 -38.19 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.48 Total: 2.30 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -2.59 Total: -14.55 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.13 Total: -44.13 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.85 -9.33 -38.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221188096.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.905 kcal (2) G-P(sol) polarization free energy of solvation -28.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds