Wall clock time and date at job start Mon Mar 30 2020 05:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33021 * 126.26799 * 2 1 4 4 C 1.31013 * 109.98214 * 180.02562 * 3 2 1 5 5 C 1.50695 * 125.17856 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46921 * 59.98160 * 5 4 3 7 7 C 1.53002 * 109.47266 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47309 * 59.99643 * 7 6 5 9 9 C 1.53008 * 109.47136 * 300.00154 * 8 7 6 10 10 C 1.52997 * 109.47286 * 299.98028 * 5 4 3 11 11 N 1.35075 * 109.64224 * 0.02562 * 4 3 2 12 12 C 1.46500 * 126.48122 * 179.97438 * 11 4 3 13 13 C 1.38436 * 107.03263 * 0.24019 * 11 4 3 14 14 C 1.40068 * 127.05817 * 179.74328 * 13 11 4 15 15 H 1.07990 * 119.99705 * 214.39941 * 14 13 11 16 16 C 1.40073 * 119.99791 * 34.39943 * 14 13 11 17 17 N 1.30854 * 120.00254 * 20.54869 * 16 14 13 18 18 Si 1.86799 * 119.99568 * 200.54121 * 16 14 13 19 19 H 1.48495 * 109.47236 * 90.00292 * 18 16 14 20 20 H 1.48507 * 109.46897 * 210.00297 * 18 16 14 21 21 H 1.48495 * 109.47367 * 329.99936 * 18 16 14 22 22 H 1.09002 * 109.47423 * 92.26607 * 1 2 3 23 23 H 1.09008 * 109.46861 * 212.26604 * 1 2 3 24 24 H 1.09000 * 109.47439 * 332.26361 * 1 2 3 25 25 H 1.09004 * 109.47385 * 179.97438 * 5 4 3 26 26 H 1.09002 * 109.46973 * 299.99491 * 6 5 4 27 27 H 1.09000 * 109.47685 * 59.99684 * 6 5 4 28 28 H 1.09002 * 109.46514 * 299.99533 * 7 6 5 29 29 H 1.08998 * 109.47537 * 180.02562 * 7 6 5 30 30 H 1.08998 * 109.46817 * 180.02562 * 8 7 6 31 31 H 1.08996 * 109.47208 * 59.99793 * 8 7 6 32 32 H 1.08994 * 109.46921 * 300.00432 * 9 8 7 33 33 H 1.08993 * 109.46956 * 180.02562 * 9 8 7 34 34 H 1.08996 * 109.47567 * 299.99851 * 10 5 4 35 35 H 1.09002 * 109.47423 * 60.00010 * 10 5 4 36 36 H 1.08994 * 109.47455 * 90.00061 * 12 11 4 37 37 H 1.09001 * 109.47144 * 329.99546 * 12 11 4 38 38 H 1.09009 * 109.46990 * 210.00074 * 12 11 4 39 39 H 0.96995 * 119.99961 * 175.16691 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2939 1.0725 0.0000 4 6 3.5514 0.7051 -0.0006 5 6 4.7302 1.6439 -0.0002 6 6 4.6798 2.5253 1.2495 7 6 5.8762 3.4789 1.2496 8 6 5.8253 4.3613 0.0008 9 6 5.8757 3.4799 -1.2489 10 6 4.6798 2.5264 -1.2490 11 7 3.6305 -0.6433 -0.0015 12 6 4.8574 -1.4439 -0.0029 13 6 2.3329 -1.1256 -0.0071 14 6 1.9311 -2.4674 -0.0149 15 1 1.0383 -2.7606 -0.5470 16 6 2.6875 -3.4290 0.6673 17 7 3.5070 -3.0621 1.6192 18 14 2.5261 -5.2350 0.2182 19 1 3.5114 -5.5718 -0.8405 20 1 2.7858 -6.0688 1.4194 21 1 1.1530 -5.5002 -0.2809 22 1 -0.3634 -0.0406 -1.0269 23 1 -0.3633 -0.8690 0.5487 24 1 -0.3634 0.9096 0.4783 25 1 5.6547 1.0664 -0.0003 26 1 3.7554 3.1028 1.2497 27 1 4.7157 1.8966 2.1392 28 1 6.8009 2.9017 1.2492 29 1 5.8406 4.1065 2.1401 30 1 6.6779 5.0404 0.0007 31 1 4.9006 4.9385 0.0012 32 1 6.8003 2.9028 -1.2493 33 1 5.8399 4.1086 -2.1385 34 1 4.7157 1.8986 -2.1393 35 1 3.7554 3.1039 -1.2488 36 1 5.1624 -1.6432 1.0244 37 1 5.6477 -0.8968 -0.5170 38 1 4.6750 -2.3875 -0.5173 39 1 3.9780 -3.7323 2.1387 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221188096.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:35 Heat of formation + Delta-G solvation = -1.874643 kcal Electronic energy + Delta-G solvation = -18758.772660 eV Core-core repulsion = 16085.700023 eV Total energy + Delta-G solvation = -2673.072638 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.06052 -39.07666 -35.73342 -34.38122 -32.70798 -31.59443 -30.75064 -29.50401 -26.88713 -25.67627 -23.36118 -23.29466 -21.05381 -20.88517 -19.66537 -18.73128 -17.08314 -16.59934 -16.09220 -15.98091 -15.12127 -14.99890 -14.95285 -14.58740 -14.05308 -13.83303 -13.57063 -13.46881 -13.25519 -13.03273 -12.95100 -12.87785 -12.67616 -12.62272 -12.38265 -12.00096 -11.95349 -11.91521 -11.30522 -11.09569 -11.04870 -10.88710 -10.24652 -9.73187 -8.72466 -8.51494 -6.24057 1.26338 1.39590 1.51213 1.86247 2.23046 2.53913 2.65272 3.16951 3.79785 3.84609 3.97597 4.21086 4.23928 4.41894 4.44642 4.52306 4.63130 4.67314 4.68149 4.72966 4.80375 4.90230 4.96200 5.02730 5.07680 5.18303 5.19914 5.30002 5.31270 5.34590 5.35163 5.38368 5.50798 5.56666 5.68605 5.98218 6.03643 6.52501 6.83754 6.91956 7.30012 7.95001 8.38822 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.030736 B = 0.006591 C = 0.005947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.764019 B = 4247.343926 C = 4706.846136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 C -0.183 4.183 3 N -0.496 5.496 4 C 0.105 3.895 5 C 0.021 3.979 6 C -0.098 4.098 7 C -0.111 4.111 8 C -0.115 4.115 9 C -0.111 4.111 10 C -0.097 4.097 11 N -0.469 5.469 12 C 0.116 3.884 13 C 0.175 3.825 14 C -0.493 4.493 15 H 0.084 0.916 16 C 0.043 3.957 17 N -0.840 5.840 18 Si 0.977 3.023 19 H -0.263 1.263 20 H -0.272 1.272 21 H -0.263 1.263 22 H 0.045 0.955 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.074 0.926 26 H 0.049 0.951 27 H 0.036 0.964 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.042 6.000 -2.438 10.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.311 4.311 3 N -0.215 5.215 4 C -0.152 4.152 5 C 0.001 3.999 6 C -0.136 4.136 7 C -0.148 4.148 8 C -0.153 4.153 9 C -0.148 4.148 10 C -0.135 4.135 11 N -0.156 5.156 12 C -0.027 4.027 13 C 0.060 3.940 14 C -0.528 4.528 15 H 0.102 0.898 16 C -0.171 4.171 17 N -0.470 5.470 18 Si 0.799 3.201 19 H -0.188 1.188 20 H -0.196 1.196 21 H -0.187 1.187 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.086 6.719 -2.309 10.764 hybrid contribution -0.201 -2.013 0.145 2.028 sum 7.884 4.707 -2.164 9.434 Atomic orbital electron populations 1.19417 0.88373 1.00092 0.99717 1.21294 0.96094 0.88662 1.25023 1.69099 1.00730 1.31985 1.19727 1.22940 0.94680 0.82075 1.15466 1.19342 0.90951 0.92763 0.96841 1.21416 0.99336 0.97220 0.95652 1.21527 0.97028 0.97405 0.98858 1.21532 1.02356 0.97623 0.93750 1.21523 0.97144 0.97436 0.98718 1.21407 0.99347 0.97225 0.95522 1.45179 1.06684 1.06342 1.57403 1.21613 0.84256 0.94622 1.02220 1.18903 0.82252 0.94639 0.98164 1.18581 1.11123 0.90115 1.32970 0.89824 1.26528 0.92676 1.05114 0.92787 1.69890 1.23808 1.37893 1.15359 0.85263 0.79793 0.76346 0.78665 1.18794 1.19635 1.18657 0.93642 0.93159 0.93215 0.90736 0.93238 0.94529 0.91196 0.90951 0.89767 0.92586 0.91113 0.90637 0.93646 0.93150 0.91619 0.90525 0.92563 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.84 10.24 71.23 0.73 -0.11 16 2 C -0.18 -10.07 7.25 42.71 0.31 -9.76 16 3 N -0.50 -26.43 11.17 -173.10 -1.93 -28.36 16 4 C 0.10 5.09 6.38 137.97 0.88 5.97 16 5 C 0.02 0.79 2.51 -11.54 -0.03 0.76 16 6 C -0.10 -3.33 5.18 30.60 0.16 -3.17 16 7 C -0.11 -2.68 5.92 30.59 0.18 -2.49 16 8 C -0.12 -2.46 5.92 30.60 0.18 -2.28 16 9 C -0.11 -2.55 5.92 30.58 0.18 -2.37 16 10 C -0.10 -3.12 5.18 30.58 0.16 -2.96 16 11 N -0.47 -23.96 3.14 -528.27 -1.66 -25.62 16 12 C 0.12 5.04 8.83 127.77 1.13 6.17 16 13 C 0.18 9.85 6.21 38.88 0.24 10.09 16 14 C -0.49 -26.77 8.86 23.16 0.21 -26.56 16 15 H 0.08 4.48 7.93 -2.92 -0.02 4.45 16 16 C 0.04 2.11 4.13 85.28 0.35 2.46 16 17 N -0.84 -42.58 10.32 21.86 0.23 -42.35 16 18 Si 0.98 37.93 29.61 68.60 2.03 39.96 16 19 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 20 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 21 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 22 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.05 2.30 8.05 -2.38 -0.02 2.28 16 24 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.07 2.55 6.68 -2.38 -0.02 2.54 16 26 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 2.94 6.98 -2.39 -0.02 2.93 16 37 H 0.08 2.74 7.02 -2.39 -0.02 2.73 16 38 H 0.06 2.52 6.96 -2.38 -0.02 2.50 16 39 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 Total: -1.00 -63.86 307.71 4.35 -59.51 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 1.01 Total: 21.11 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 4.68 Total: -24.25 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -3.37 Total: -96.33 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Total: -63.86 4.35 -59.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221188096.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.631 kcal (2) G-P(sol) polarization free energy of solvation -63.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds