Wall clock time and date at job start Mon Mar 30 2020 05:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39091 * 126.81562 * 2 1 4 4 C 1.41225 * 126.43879 * 0.04618 * 3 2 1 5 5 H 1.08004 * 119.99874 * 359.97438 * 4 3 2 6 6 C 1.39712 * 120.00145 * 179.97438 * 4 3 2 7 7 N 1.31018 * 119.99816 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00182 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47063 * 89.99839 * 8 6 4 10 10 H 1.48497 * 109.47156 * 209.99678 * 8 6 4 11 11 H 1.48500 * 109.47196 * 329.99706 * 8 6 4 12 12 N 1.35962 * 107.11765 * 179.89884 * 3 2 1 13 13 C 1.30150 * 109.13806 * 0.37738 * 12 3 2 14 14 C 1.50695 * 125.20663 * 179.78384 * 13 12 3 15 15 C 1.53000 * 109.47207 * 59.97579 * 14 13 12 16 16 C 1.52999 * 109.47236 * 180.02562 * 15 14 13 17 17 C 1.52990 * 109.47553 * 59.99587 * 16 15 14 18 18 C 1.53000 * 109.47186 * 300.00443 * 17 16 15 19 19 C 1.52997 * 109.47276 * 59.99920 * 18 17 16 20 20 N 1.35970 * 109.59312 * 359.76015 * 13 12 3 21 21 C 1.46501 * 126.10999 * 180.02562 * 20 13 12 22 22 H 1.09002 * 109.47152 * 269.68150 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.68251 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.68231 * 1 2 3 25 25 H 0.96999 * 119.99933 * 179.97438 * 7 6 4 26 26 H 1.08998 * 109.47521 * 179.97438 * 14 13 12 27 27 H 1.08996 * 109.47204 * 299.99993 * 15 14 13 28 28 H 1.08999 * 109.47123 * 59.99743 * 15 14 13 29 29 H 1.09009 * 109.46945 * 299.99327 * 16 15 14 30 30 H 1.09002 * 109.47144 * 180.02562 * 16 15 14 31 31 H 1.09001 * 109.47828 * 179.97438 * 17 16 15 32 32 H 1.09006 * 109.47321 * 60.00428 * 17 16 15 33 33 H 1.08998 * 109.46830 * 299.99356 * 18 17 16 34 34 H 1.09008 * 109.47280 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.47271 * 180.02562 * 19 18 17 36 36 H 1.08996 * 109.47164 * 59.99780 * 19 18 17 37 37 H 1.09003 * 109.46983 * 270.00242 * 21 20 13 38 38 H 1.08992 * 109.47262 * 30.00091 * 21 20 13 39 39 H 1.08999 * 109.46628 * 150.00204 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3405 1.1135 0.0000 4 6 1.9336 2.4659 0.0009 5 1 0.8823 2.7135 0.0013 6 6 2.8910 3.4835 0.0013 7 7 4.1662 3.1831 0.0014 8 14 2.3528 5.2723 0.0018 9 1 2.2099 5.7458 1.4020 10 1 3.3713 6.0958 -0.6978 11 1 1.0492 5.3972 -0.6984 12 7 3.6206 0.6552 0.0023 13 6 3.6079 -0.6462 -0.0044 14 6 4.8306 -1.5269 -0.0092 15 6 5.6665 -1.2458 1.2411 16 6 6.9083 -2.1396 1.2360 17 6 7.7429 -1.8460 -0.0121 18 6 6.9071 -2.1271 -1.2624 19 6 5.6654 -1.2332 -1.2574 20 7 2.3225 -1.0896 -0.0060 21 6 1.8923 -2.4900 -0.0125 22 1 -0.3633 -0.0057 1.0277 23 1 -0.3633 -0.8871 -0.5188 24 1 -0.3633 0.8929 -0.5089 25 1 4.8309 3.8895 0.0013 26 1 4.5249 -2.5731 -0.0141 27 1 5.9723 -0.1997 1.2461 28 1 5.0717 -1.4547 2.1303 29 1 6.6028 -3.1860 1.2309 30 1 7.5035 -1.9397 2.1270 31 1 8.6279 -2.4824 -0.0156 32 1 8.0485 -0.7996 -0.0070 33 1 6.6017 -3.1734 -1.2675 34 1 7.5019 -1.9183 -2.1517 35 1 5.0696 -1.4338 -2.1479 36 1 5.9709 -0.1870 -1.2522 37 1 1.7853 -2.8324 -1.0418 38 1 2.6365 -3.1011 0.4981 39 1 0.9351 -2.5784 0.5013 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221188165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:41 Heat of formation + Delta-G solvation = 23.399405 kcal Electronic energy + Delta-G solvation = -18693.866456 eV Core-core repulsion = 16021.889784 eV Total energy + Delta-G solvation = -2671.976673 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.18683 -37.74247 -33.56263 -32.14676 -31.43685 -30.34203 -29.49110 -26.84656 -25.45012 -23.94497 -22.11469 -21.67797 -19.88997 -18.65008 -18.01968 -16.66579 -15.31748 -14.61276 -14.53647 -14.49249 -13.84139 -13.69486 -13.51392 -12.64400 -12.36877 -12.32153 -12.17521 -12.14435 -11.79923 -11.37234 -11.33492 -11.22674 -10.93847 -10.81556 -10.71624 -10.65596 -10.21589 -9.95094 -9.85468 -9.72173 -9.69984 -9.04527 -7.87359 -7.77108 -6.66308 -6.11832 -3.86419 3.17875 3.30115 3.33604 3.55522 4.16062 4.30948 4.68352 5.08040 5.11617 5.17606 5.44488 5.58593 5.64598 5.68344 5.75819 5.83304 5.85523 5.90711 5.92533 5.98007 6.05520 6.17945 6.23990 6.30143 6.38767 6.46299 6.51836 6.63136 6.63816 6.72403 6.82309 6.88508 7.04026 7.38557 7.61988 7.93358 8.13991 8.55040 8.89036 9.23463 9.43999 10.16072 10.82015 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020198 B = 0.007874 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.971596 B = 3555.121815 C = 4589.715001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 C -0.207 4.207 3 C 0.202 3.798 4 C -0.450 4.450 5 H 0.073 0.927 6 C 0.076 3.924 7 N -0.772 5.772 8 Si 0.897 3.103 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.267 1.267 12 N -0.444 5.444 13 C 0.166 3.834 14 C 0.017 3.983 15 C -0.105 4.105 16 C -0.116 4.116 17 C -0.119 4.119 18 C -0.116 4.116 19 C -0.104 4.104 20 N -0.469 5.469 21 C 0.088 3.912 22 H 0.035 0.965 23 H 0.029 0.971 24 H 0.061 0.939 25 H 0.264 0.736 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.081 -10.414 -0.027 10.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.314 4.314 3 C 0.078 3.922 4 C -0.486 4.486 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.398 5.398 8 Si 0.722 3.278 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.192 1.192 12 N -0.166 5.166 13 C -0.093 4.093 14 C -0.004 4.004 15 C -0.143 4.143 16 C -0.154 4.154 17 C -0.156 4.156 18 C -0.154 4.154 19 C -0.142 4.142 20 N -0.161 5.161 21 C -0.057 4.057 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.930 -9.943 -0.027 10.691 hybrid contribution -1.091 0.238 0.003 1.117 sum 2.839 -9.705 -0.024 10.111 Atomic orbital electron populations 1.19541 0.90041 0.99958 0.99137 1.20896 0.92227 0.86577 1.31739 1.18236 0.86023 0.91910 0.96003 1.18428 0.93298 0.88185 1.48664 0.90899 1.25733 0.94736 0.99889 0.93813 1.70103 1.00291 1.32807 1.36617 0.86531 0.79046 0.83589 0.78586 1.20097 1.20775 1.19172 1.71114 1.22448 1.03338 1.19749 1.23157 0.83834 0.92502 1.09851 1.19237 0.90084 0.95180 0.95878 1.21491 0.95002 1.01255 0.96549 1.21542 0.96948 0.99348 0.97553 1.21527 0.97512 1.01704 0.94862 1.21544 0.96941 0.99375 0.97533 1.21485 0.94985 1.01216 0.96556 1.44412 1.06595 1.04477 1.60598 1.21537 1.00429 0.82693 1.01038 0.94629 0.95158 0.92007 0.92568 0.92183 0.90139 0.92801 0.92741 0.92390 0.92813 0.91667 0.92734 0.92389 0.92798 0.90136 0.93066 0.91614 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.60 9.77 36.01 0.35 -0.24 16 2 C -0.21 -5.20 7.08 -80.38 -0.57 -5.77 16 3 C 0.20 5.83 6.69 -84.58 -0.57 5.27 16 4 C -0.45 -13.05 9.12 -37.90 -0.35 -13.39 16 5 H 0.07 2.01 7.34 -52.48 -0.39 1.62 16 6 C 0.08 2.13 5.49 -17.35 -0.10 2.03 16 7 N -0.77 -22.35 11.94 55.54 0.66 -21.69 16 8 Si 0.90 20.57 29.56 -169.99 -5.02 15.54 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 N -0.44 -12.43 9.50 -8.18 -0.08 -12.51 16 13 C 0.17 3.91 6.38 -154.86 -0.99 2.92 16 14 C 0.02 0.31 2.51 -91.77 -0.23 0.08 16 15 C -0.10 -1.82 5.18 -26.73 -0.14 -1.96 16 16 C -0.12 -1.57 5.92 -26.74 -0.16 -1.73 16 17 C -0.12 -1.54 5.92 -26.74 -0.16 -1.70 16 18 C -0.12 -1.58 5.92 -26.73 -0.16 -1.73 16 19 C -0.10 -1.82 5.18 -26.73 -0.14 -1.96 16 20 N -0.47 -10.51 3.15 -115.49 -0.36 -10.88 16 21 C 0.09 1.43 10.47 59.85 0.63 2.06 16 22 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.03 0.54 7.85 -51.93 -0.41 0.13 16 24 H 0.06 1.29 7.60 -51.93 -0.39 0.89 16 25 H 0.26 7.07 8.30 -40.82 -0.34 6.73 16 26 H 0.06 0.98 6.67 -51.93 -0.35 0.63 16 27 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.93 7.00 -51.93 -0.36 0.57 16 39 H 0.07 0.99 7.77 -51.93 -0.40 0.59 16 LS Contribution 311.34 15.07 4.69 4.69 Total: -1.00 -32.15 311.34 -9.19 -41.34 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.51 Total: -0.36 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -2.57 Total: -16.13 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.22 Total: -45.08 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.15 -9.19 -41.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221188165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.738 kcal (2) G-P(sol) polarization free energy of solvation -32.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds