Wall clock time and date at job start Mon Mar 30 2020 05:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39091 * 126.81562 * 2 1 4 4 C 1.41225 * 126.43879 * 0.04618 * 3 2 1 5 5 H 1.08004 * 119.99874 * 359.97438 * 4 3 2 6 6 C 1.39712 * 120.00145 * 179.97438 * 4 3 2 7 7 N 1.31018 * 119.99816 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00182 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47063 * 89.99839 * 8 6 4 10 10 H 1.48497 * 109.47156 * 209.99678 * 8 6 4 11 11 H 1.48500 * 109.47196 * 329.99706 * 8 6 4 12 12 N 1.35962 * 107.11765 * 179.89884 * 3 2 1 13 13 C 1.30150 * 109.13806 * 0.37738 * 12 3 2 14 14 C 1.50695 * 125.20663 * 179.78384 * 13 12 3 15 15 C 1.53000 * 109.47207 * 59.97579 * 14 13 12 16 16 C 1.52999 * 109.47236 * 180.02562 * 15 14 13 17 17 C 1.52990 * 109.47553 * 59.99587 * 16 15 14 18 18 C 1.53000 * 109.47186 * 300.00443 * 17 16 15 19 19 C 1.52997 * 109.47276 * 59.99920 * 18 17 16 20 20 N 1.35970 * 109.59312 * 359.76015 * 13 12 3 21 21 C 1.46501 * 126.10999 * 180.02562 * 20 13 12 22 22 H 1.09002 * 109.47152 * 269.68150 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.68251 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.68231 * 1 2 3 25 25 H 0.96999 * 119.99933 * 179.97438 * 7 6 4 26 26 H 1.08998 * 109.47521 * 179.97438 * 14 13 12 27 27 H 1.08996 * 109.47204 * 299.99993 * 15 14 13 28 28 H 1.08999 * 109.47123 * 59.99743 * 15 14 13 29 29 H 1.09009 * 109.46945 * 299.99327 * 16 15 14 30 30 H 1.09002 * 109.47144 * 180.02562 * 16 15 14 31 31 H 1.09001 * 109.47828 * 179.97438 * 17 16 15 32 32 H 1.09006 * 109.47321 * 60.00428 * 17 16 15 33 33 H 1.08998 * 109.46830 * 299.99356 * 18 17 16 34 34 H 1.09008 * 109.47280 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.47271 * 180.02562 * 19 18 17 36 36 H 1.08996 * 109.47164 * 59.99780 * 19 18 17 37 37 H 1.09003 * 109.46983 * 270.00242 * 21 20 13 38 38 H 1.08992 * 109.47262 * 30.00091 * 21 20 13 39 39 H 1.08999 * 109.46628 * 150.00204 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3405 1.1135 0.0000 4 6 1.9336 2.4659 0.0009 5 1 0.8823 2.7135 0.0013 6 6 2.8910 3.4835 0.0013 7 7 4.1662 3.1831 0.0014 8 14 2.3528 5.2723 0.0018 9 1 2.2099 5.7458 1.4020 10 1 3.3713 6.0958 -0.6978 11 1 1.0492 5.3972 -0.6984 12 7 3.6206 0.6552 0.0023 13 6 3.6079 -0.6462 -0.0044 14 6 4.8306 -1.5269 -0.0092 15 6 5.6665 -1.2458 1.2411 16 6 6.9083 -2.1396 1.2360 17 6 7.7429 -1.8460 -0.0121 18 6 6.9071 -2.1271 -1.2624 19 6 5.6654 -1.2332 -1.2574 20 7 2.3225 -1.0896 -0.0060 21 6 1.8923 -2.4900 -0.0125 22 1 -0.3633 -0.0057 1.0277 23 1 -0.3633 -0.8871 -0.5188 24 1 -0.3633 0.8929 -0.5089 25 1 4.8309 3.8895 0.0013 26 1 4.5249 -2.5731 -0.0141 27 1 5.9723 -0.1997 1.2461 28 1 5.0717 -1.4547 2.1303 29 1 6.6028 -3.1860 1.2309 30 1 7.5035 -1.9397 2.1270 31 1 8.6279 -2.4824 -0.0156 32 1 8.0485 -0.7996 -0.0070 33 1 6.6017 -3.1734 -1.2675 34 1 7.5019 -1.9183 -2.1517 35 1 5.0696 -1.4338 -2.1479 36 1 5.9709 -0.1870 -1.2522 37 1 1.7853 -2.8324 -1.0418 38 1 2.6365 -3.1011 0.4981 39 1 0.9351 -2.5784 0.5013 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221188165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:40 Heat of formation + Delta-G solvation = 5.015855 kcal Electronic energy + Delta-G solvation = -18694.663627 eV Core-core repulsion = 16021.889784 eV Total energy + Delta-G solvation = -2672.773843 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.99645 -39.06454 -35.49514 -33.91364 -33.07253 -31.59624 -31.05538 -28.74377 -27.08702 -25.61667 -23.36590 -23.31371 -21.39038 -20.23813 -19.76376 -18.58829 -16.96244 -16.42052 -16.14156 -16.04461 -15.10751 -14.97912 -14.95512 -14.39116 -14.01287 -13.81951 -13.61454 -13.59994 -13.04179 -13.00611 -12.96891 -12.84179 -12.61664 -12.55419 -12.31283 -11.94261 -11.87899 -11.73396 -11.29819 -11.10243 -11.07034 -10.90536 -9.80348 -9.66259 -8.63420 -8.15719 -5.96515 1.34401 1.40083 1.53587 1.73169 2.34706 2.56195 2.70930 3.75200 3.78075 3.84063 3.99489 4.17945 4.26368 4.40136 4.43454 4.48491 4.56015 4.59975 4.66736 4.68536 4.70907 4.72771 4.74502 4.96305 4.98021 5.15711 5.16270 5.28734 5.35462 5.38961 5.39451 5.40368 5.49139 5.60380 5.72694 6.01960 6.20523 6.49174 7.01963 7.23442 7.40894 8.24539 8.79759 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020198 B = 0.007874 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.971596 B = 3555.121815 C = 4589.715001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 C -0.205 4.205 3 C 0.141 3.859 4 C -0.487 4.487 5 H 0.072 0.928 6 C 0.023 3.977 7 N -0.816 5.816 8 Si 0.975 3.025 9 H -0.269 1.269 10 H -0.276 1.276 11 H -0.259 1.259 12 N -0.494 5.494 13 C 0.159 3.841 14 C 0.019 3.981 15 C -0.099 4.099 16 C -0.107 4.107 17 C -0.118 4.118 18 C -0.107 4.107 19 C -0.098 4.098 20 N -0.470 5.470 21 C 0.078 3.922 22 H 0.048 0.952 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.264 0.736 26 H 0.095 0.905 27 H 0.035 0.965 28 H 0.046 0.954 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.035 0.965 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.926 -13.157 -0.025 13.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.314 4.314 3 C 0.017 3.983 4 C -0.522 4.522 5 H 0.091 0.909 6 C -0.190 4.190 7 N -0.444 5.444 8 Si 0.797 3.203 9 H -0.194 1.194 10 H -0.201 1.201 11 H -0.183 1.183 12 N -0.216 5.216 13 C -0.102 4.102 14 C -0.001 4.001 15 C -0.138 4.138 16 C -0.145 4.145 17 C -0.156 4.156 18 C -0.145 4.145 19 C -0.137 4.137 20 N -0.160 5.160 21 C -0.064 4.064 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.113 0.887 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.756 -12.736 -0.025 13.278 hybrid contribution -1.109 0.921 0.003 1.442 sum 2.647 -11.815 -0.022 12.108 Atomic orbital electron populations 1.19583 0.87185 1.01166 1.00286 1.21509 0.94165 0.86722 1.28988 1.18789 0.87480 0.93309 0.98747 1.18752 0.93580 0.89488 1.50400 0.90943 1.26629 0.94590 1.04610 0.93173 1.70267 1.01468 1.34129 1.38491 0.85338 0.78778 0.77375 0.78804 1.19398 1.20124 1.18293 1.70986 1.22967 1.06118 1.21523 1.24035 0.85865 0.92197 1.08120 1.19455 0.88316 0.95773 0.96553 1.21401 0.96828 0.99694 0.95834 1.21507 0.94910 0.99641 0.98395 1.21546 0.98541 1.01198 0.94299 1.21507 0.94900 0.99656 0.98388 1.21393 0.96816 0.99661 0.95836 1.44752 1.05885 1.06479 1.58908 1.21954 1.02155 0.79270 1.03065 0.93344 0.91865 0.92777 0.92609 0.88732 0.94653 0.93503 0.89933 0.91236 0.89499 0.93858 0.89947 0.91252 0.93573 0.94649 0.91023 0.88895 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.97 9.77 71.24 0.70 -0.28 16 2 C -0.20 -10.34 7.08 42.10 0.30 -10.04 16 3 C 0.14 8.52 6.69 39.44 0.26 8.78 16 4 C -0.49 -29.62 9.12 23.36 0.21 -29.41 16 5 H 0.07 4.18 7.34 -2.91 -0.02 4.16 16 6 C 0.02 1.36 5.49 85.17 0.47 1.82 16 7 N -0.82 -50.27 11.94 21.79 0.26 -50.01 16 8 Si 0.97 44.14 29.56 68.60 2.03 46.17 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 12 N -0.49 -29.14 9.50 -179.80 -1.71 -30.85 16 13 C 0.16 7.60 6.38 137.93 0.88 8.48 16 14 C 0.02 0.69 2.51 -11.54 -0.03 0.66 16 15 C -0.10 -3.45 5.18 30.59 0.16 -3.29 16 16 C -0.11 -2.61 5.92 30.59 0.18 -2.43 16 17 C -0.12 -2.80 5.92 30.59 0.18 -2.61 16 18 C -0.11 -2.62 5.92 30.59 0.18 -2.44 16 19 C -0.10 -3.45 5.18 30.59 0.16 -3.29 16 20 N -0.47 -20.65 3.15 -519.30 -1.63 -22.29 16 21 C 0.08 2.26 10.47 127.77 1.34 3.60 16 22 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.06 2.10 7.85 -2.39 -0.02 2.08 16 24 H 0.05 2.24 7.60 -2.38 -0.02 2.23 16 25 H 0.26 15.09 8.30 -92.71 -0.77 14.32 16 26 H 0.09 2.74 6.67 -2.39 -0.02 2.72 16 27 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.09 2.21 7.00 -2.39 -0.02 2.19 16 39 H 0.08 2.18 7.77 -2.39 -0.02 2.16 16 Total: -1.00 -76.51 311.34 4.94 -71.56 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 1.01 Total: 15.85 kcal Atomic # 6 Polarization: -35.42 SS G_CDS: 4.99 Total: -30.44 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -3.08 Total: -103.15 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -76.51 4.94 -71.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221188165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.579 kcal (2) G-P(sol) polarization free energy of solvation -76.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds