Wall clock time and date at job start Mon Mar 30 2020 05:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38230 * 120.41588 * 2 1 4 4 N 1.31859 * 120.76469 * 180.02562 * 3 2 1 5 5 C 1.31893 * 121.72056 * 359.70032 * 4 3 2 6 6 C 1.38179 * 120.76641 * 0.58511 * 5 4 3 7 7 C 1.50696 * 120.42134 * 179.69940 * 6 5 4 8 8 N 1.46897 * 109.47571 * 275.73817 * 7 6 5 9 9 C 1.46911 * 110.99680 * 287.85460 * 8 7 6 10 10 C 1.50699 * 109.47186 * 169.99997 * 9 8 7 11 11 H 1.07996 * 119.99633 * 359.97438 * 10 9 8 12 12 C 1.37869 * 120.00183 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99940 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00358 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46764 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47024 * 119.99718 * 14 12 10 17 17 H 1.48500 * 109.46936 * 240.00076 * 14 12 10 18 18 C 1.46898 * 111.00305 * 163.90460 * 8 7 6 19 19 C 1.53004 * 109.46572 * 290.20020 * 18 8 7 20 20 C 1.52990 * 109.47355 * 50.20072 * 18 8 7 21 21 C 1.38621 * 120.42463 * 180.02562 * 2 1 3 22 22 H 1.09002 * 109.46679 * 269.97901 * 1 2 3 23 23 H 1.09000 * 109.47562 * 29.97730 * 1 2 3 24 24 H 1.08993 * 109.47210 * 149.98139 * 1 2 3 25 25 H 1.07999 * 119.62163 * 359.97438 * 3 2 1 26 26 H 1.08006 * 119.61662 * 180.30901 * 5 4 3 27 27 H 1.09004 * 109.46867 * 35.73491 * 7 6 5 28 28 H 1.09005 * 109.47419 * 155.72859 * 7 6 5 29 29 H 1.09000 * 109.46969 * 290.00390 * 9 8 7 30 30 H 1.09001 * 109.46780 * 50.00097 * 9 8 7 31 31 H 0.96992 * 120.00260 * 179.97438 * 13 12 10 32 32 H 1.08999 * 109.47052 * 170.20467 * 18 8 7 33 33 H 1.08992 * 109.47324 * 59.26352 * 19 18 8 34 34 H 1.09000 * 109.46752 * 179.26352 * 19 18 8 35 35 H 1.08997 * 109.47351 * 299.26171 * 19 18 8 36 36 H 1.08995 * 109.47475 * 60.00470 * 20 18 8 37 37 H 1.08999 * 109.47109 * 180.02562 * 20 18 8 38 38 H 1.08999 * 109.47363 * 300.00204 * 20 18 8 39 39 H 1.08003 * 120.78395 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1921 0.0000 4 7 3.5254 1.2001 -0.0005 5 6 4.2256 0.0824 0.0048 6 6 3.5948 -1.1470 -0.0009 7 6 4.4027 -2.4191 -0.0016 8 7 4.7871 -2.7544 -1.3791 9 6 3.6286 -3.2280 -2.1485 10 6 3.9999 -3.3273 -3.6056 11 1 4.9966 -3.0645 -3.9280 12 6 3.0670 -3.7526 -4.5273 13 7 1.8530 -4.0721 -4.1348 14 14 3.5269 -3.8750 -6.3337 15 1 4.9417 -3.4612 -6.5133 16 1 3.3586 -5.2770 -6.7934 17 1 2.6460 -2.9837 -7.1303 18 6 5.8714 -3.7454 -1.3967 19 6 7.1627 -3.0973 -0.8931 20 6 5.5030 -4.9207 -0.4892 21 6 2.2090 -1.1953 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3634 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5141 25 1 1.6674 2.1277 -0.0004 26 1 5.3047 0.1287 0.0093 27 1 5.2995 -2.2803 0.6023 28 1 3.8051 -3.2293 0.4164 29 1 3.3262 -4.2093 -1.7828 30 1 2.8030 -2.5261 -2.0309 31 1 1.1966 -4.3710 -4.7832 32 1 6.0185 -4.1049 -2.4152 33 1 7.0116 -2.7261 0.1205 34 1 7.9641 -3.8361 -0.8938 35 1 7.4322 -2.2682 -1.5473 36 1 4.5831 -5.3824 -0.8480 37 1 6.3077 -5.6557 -0.5020 38 1 5.3558 -4.5612 0.5292 39 1 1.6888 -2.1418 -0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227302001.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:04 Heat of formation + Delta-G solvation = 25.148795 kcal Electronic energy + Delta-G solvation = -18438.001656 eV Core-core repulsion = 15766.100842 eV Total energy + Delta-G solvation = -2671.900813 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.93717 -37.67817 -33.23860 -32.80692 -32.78120 -30.17746 -27.45100 -26.92023 -26.64289 -24.76026 -22.70294 -22.12430 -20.90702 -18.65211 -16.58327 -16.38190 -15.99537 -15.48687 -14.74987 -14.27120 -13.81238 -13.70327 -13.30953 -12.96036 -12.68808 -12.61732 -12.51648 -12.37221 -12.17117 -12.06778 -11.49996 -11.41812 -11.11746 -10.84425 -10.68692 -10.67041 -10.46283 -10.04718 -9.81534 -9.22752 -9.11009 -9.01215 -8.44104 -8.38054 -7.23095 -6.03737 -4.03679 1.51470 1.71425 3.29864 3.37643 3.42480 4.14478 4.43202 4.80093 4.97240 5.08996 5.21190 5.32680 5.37533 5.43943 5.51274 5.54765 5.71201 5.73865 5.81655 5.94263 5.97644 6.02071 6.07452 6.18491 6.24377 6.28091 6.31213 6.51022 6.61382 6.72516 6.77320 6.86425 7.12280 7.32320 7.37864 7.80136 8.09678 8.20984 8.36421 8.54184 9.03809 9.60114 11.07166 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.008227 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.045745 B = 3402.621117 C = 4483.767195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.140 4.140 3 C 0.084 3.916 4 N -0.489 5.489 5 C 0.107 3.893 6 C -0.103 4.103 7 C 0.092 3.908 8 N -0.524 5.524 9 C 0.189 3.811 10 C -0.504 4.504 11 H 0.063 0.937 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.894 3.106 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.285 1.285 18 C 0.080 3.920 19 C -0.141 4.141 20 C -0.181 4.181 21 C -0.063 4.063 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.147 0.853 26 H 0.150 0.850 27 H 0.074 0.926 28 H 0.036 0.964 29 H -0.007 1.007 30 H 0.033 0.967 31 H 0.260 0.740 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.046 0.954 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.850 3.938 9.965 10.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.142 4.142 3 C -0.073 4.073 4 N -0.196 5.196 5 C -0.050 4.050 6 C -0.106 4.106 7 C -0.037 4.037 8 N -0.248 5.248 9 C 0.065 3.935 10 C -0.542 4.542 11 H 0.081 0.919 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.722 3.278 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.029 4.029 19 C -0.198 4.198 20 C -0.240 4.240 21 C -0.089 4.089 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.164 0.836 26 H 0.168 0.832 27 H 0.093 0.907 28 H 0.054 0.946 29 H 0.011 0.989 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.310 5.107 9.655 11.164 hybrid contribution -0.734 -1.741 -0.777 2.043 sum 1.576 3.366 8.879 9.625 Atomic orbital electron populations 1.20684 0.90663 1.03211 1.01912 1.20839 0.97309 0.94203 1.01854 1.22479 0.90120 0.97026 0.97699 1.67621 1.08254 1.31436 1.12317 1.22473 0.99923 0.87053 0.95598 1.20837 0.94139 0.96890 0.98716 1.20957 0.97307 0.92377 0.93031 1.62348 1.11218 1.42360 1.08903 1.19800 0.87455 0.93794 0.92496 1.21191 0.98197 1.43211 0.91642 0.91909 1.24958 0.94961 0.95639 0.98984 1.69957 1.03787 1.45831 1.34241 0.86497 0.78660 0.77487 0.85143 1.19656 1.21142 1.21073 1.21616 0.91064 0.89955 1.00237 1.21862 0.96816 1.00584 1.00575 1.22447 1.01978 0.99762 0.99785 1.21435 0.93718 0.98120 0.95644 0.91455 0.91500 0.91118 0.83594 0.83236 0.90747 0.94596 0.98897 0.94892 0.93086 0.88757 0.93514 0.93306 0.92240 0.92121 0.93201 0.93457 0.85216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.04 36.00 0.36 -0.97 16 2 C -0.14 -2.19 5.90 -104.48 -0.62 -2.81 16 3 C 0.08 1.32 10.86 -17.54 -0.19 1.13 16 4 N -0.49 -8.52 10.36 -13.25 -0.14 -8.66 16 5 C 0.11 1.84 10.88 -17.55 -0.19 1.65 16 6 C -0.10 -1.83 4.93 -104.48 -0.51 -2.34 16 7 C 0.09 1.60 3.73 -4.98 -0.02 1.58 16 8 N -0.52 -10.80 4.36 -229.52 -1.00 -11.80 16 9 C 0.19 4.76 4.46 -4.97 -0.02 4.74 16 10 C -0.50 -13.96 8.31 -34.44 -0.29 -14.25 16 11 H 0.06 1.74 7.23 -52.49 -0.38 1.36 16 12 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 13 N -0.90 -26.33 13.29 55.43 0.74 -25.59 16 14 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 18 C 0.08 1.47 2.76 -67.72 -0.19 1.28 16 19 C -0.14 -2.11 9.24 37.16 0.34 -1.76 16 20 C -0.18 -3.01 8.44 37.15 0.31 -2.69 16 21 C -0.06 -1.09 8.16 -39.28 -0.32 -1.41 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 24 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 25 H 0.15 1.84 8.06 -52.49 -0.42 1.41 16 26 H 0.15 2.31 8.06 -52.48 -0.42 1.89 16 27 H 0.07 1.13 6.09 -51.93 -0.32 0.81 16 28 H 0.04 0.63 7.08 -51.93 -0.37 0.26 16 29 H -0.01 -0.18 6.60 -51.93 -0.34 -0.52 16 30 H 0.03 0.90 6.20 -51.93 -0.32 0.57 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.09 1.97 6.60 -51.93 -0.34 1.63 16 33 H 0.05 0.64 6.41 -51.93 -0.33 0.30 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.15 6.74 -51.93 -0.35 0.80 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.71 6.64 -51.93 -0.34 0.37 16 39 H 0.13 2.24 8.06 -52.48 -0.42 1.82 16 LS Contribution 312.89 15.07 4.72 4.72 Total: -1.00 -30.21 312.89 -8.17 -38.38 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.03 Total: 0.67 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -1.43 Total: -14.39 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -0.40 Total: -46.05 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.21 -8.17 -38.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227302001.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.529 kcal (2) G-P(sol) polarization free energy of solvation -30.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds