Wall clock time and date at job start Mon Mar 30 2020 05:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38230 * 120.41588 * 2 1 4 4 N 1.31859 * 120.76469 * 180.02562 * 3 2 1 5 5 C 1.31893 * 121.72056 * 359.70032 * 4 3 2 6 6 C 1.38179 * 120.76641 * 0.58511 * 5 4 3 7 7 C 1.50696 * 120.42134 * 179.69940 * 6 5 4 8 8 N 1.46897 * 109.47571 * 275.73817 * 7 6 5 9 9 C 1.46911 * 110.99680 * 287.85460 * 8 7 6 10 10 C 1.50699 * 109.47186 * 169.99997 * 9 8 7 11 11 H 1.07996 * 119.99633 * 359.97438 * 10 9 8 12 12 C 1.37869 * 120.00183 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99940 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00358 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46764 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47024 * 119.99718 * 14 12 10 17 17 H 1.48500 * 109.46936 * 240.00076 * 14 12 10 18 18 C 1.46898 * 111.00305 * 163.90460 * 8 7 6 19 19 C 1.53004 * 109.46572 * 290.20020 * 18 8 7 20 20 C 1.52990 * 109.47355 * 50.20072 * 18 8 7 21 21 C 1.38621 * 120.42463 * 180.02562 * 2 1 3 22 22 H 1.09002 * 109.46679 * 269.97901 * 1 2 3 23 23 H 1.09000 * 109.47562 * 29.97730 * 1 2 3 24 24 H 1.08993 * 109.47210 * 149.98139 * 1 2 3 25 25 H 1.07999 * 119.62163 * 359.97438 * 3 2 1 26 26 H 1.08006 * 119.61662 * 180.30901 * 5 4 3 27 27 H 1.09004 * 109.46867 * 35.73491 * 7 6 5 28 28 H 1.09005 * 109.47419 * 155.72859 * 7 6 5 29 29 H 1.09000 * 109.46969 * 290.00390 * 9 8 7 30 30 H 1.09001 * 109.46780 * 50.00097 * 9 8 7 31 31 H 0.96992 * 120.00260 * 179.97438 * 13 12 10 32 32 H 1.08999 * 109.47052 * 170.20467 * 18 8 7 33 33 H 1.08992 * 109.47324 * 59.26352 * 19 18 8 34 34 H 1.09000 * 109.46752 * 179.26352 * 19 18 8 35 35 H 1.08997 * 109.47351 * 299.26171 * 19 18 8 36 36 H 1.08995 * 109.47475 * 60.00470 * 20 18 8 37 37 H 1.08999 * 109.47109 * 180.02562 * 20 18 8 38 38 H 1.08999 * 109.47363 * 300.00204 * 20 18 8 39 39 H 1.08003 * 120.78395 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1921 0.0000 4 7 3.5254 1.2001 -0.0005 5 6 4.2256 0.0824 0.0048 6 6 3.5948 -1.1470 -0.0009 7 6 4.4027 -2.4191 -0.0016 8 7 4.7871 -2.7544 -1.3791 9 6 3.6286 -3.2280 -2.1485 10 6 3.9999 -3.3273 -3.6056 11 1 4.9966 -3.0645 -3.9280 12 6 3.0670 -3.7526 -4.5273 13 7 1.8530 -4.0721 -4.1348 14 14 3.5269 -3.8750 -6.3337 15 1 4.9417 -3.4612 -6.5133 16 1 3.3586 -5.2770 -6.7934 17 1 2.6460 -2.9837 -7.1303 18 6 5.8714 -3.7454 -1.3967 19 6 7.1627 -3.0973 -0.8931 20 6 5.5030 -4.9207 -0.4892 21 6 2.2090 -1.1953 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3634 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5141 25 1 1.6674 2.1277 -0.0004 26 1 5.3047 0.1287 0.0093 27 1 5.2995 -2.2803 0.6023 28 1 3.8051 -3.2293 0.4164 29 1 3.3262 -4.2093 -1.7828 30 1 2.8030 -2.5261 -2.0309 31 1 1.1966 -4.3710 -4.7832 32 1 6.0185 -4.1049 -2.4152 33 1 7.0116 -2.7261 0.1205 34 1 7.9641 -3.8361 -0.8938 35 1 7.4322 -2.2682 -1.5473 36 1 4.5831 -5.3824 -0.8480 37 1 6.3077 -5.6557 -0.5020 38 1 5.3558 -4.5612 0.5292 39 1 1.6888 -2.1418 -0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227302001.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:04 Heat of formation + Delta-G solvation = 6.587813 kcal Electronic energy + Delta-G solvation = -18438.806520 eV Core-core repulsion = 15766.100842 eV Total energy + Delta-G solvation = -2672.705678 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.24252 -39.21379 -34.90794 -34.43144 -34.13064 -31.80863 -29.15563 -28.13538 -27.94486 -26.42923 -24.09092 -23.91973 -22.21217 -20.19112 -18.37332 -17.82858 -17.49343 -16.99216 -16.49778 -15.97293 -15.20430 -15.04543 -14.67977 -14.51275 -14.09407 -13.96421 -13.87813 -13.75534 -13.51449 -13.24968 -13.20514 -12.80979 -12.70243 -12.57572 -12.44584 -12.20407 -12.02858 -11.69765 -11.44542 -11.19513 -10.61211 -10.43991 -10.36480 -9.65182 -8.90872 -8.19839 -6.27475 0.23879 0.38588 1.36878 1.38377 1.50902 2.38876 2.84117 3.13118 3.45122 3.62249 3.88716 3.92220 4.09472 4.16100 4.16395 4.28909 4.36032 4.55856 4.60203 4.62491 4.80369 4.82583 4.85512 4.87871 4.94359 5.03582 5.09874 5.19084 5.27483 5.30073 5.36016 5.41426 5.49785 5.57969 5.68744 5.86604 6.10672 6.43944 6.69277 6.89444 7.07523 7.41068 8.90844 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.008227 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.045745 B = 3402.621117 C = 4483.767195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.142 4.142 3 C 0.081 3.919 4 N -0.504 5.504 5 C 0.098 3.902 6 C -0.119 4.119 7 C 0.097 3.903 8 N -0.531 5.531 9 C 0.210 3.790 10 C -0.518 4.518 11 H 0.057 0.943 12 C 0.004 3.996 13 N -0.931 5.931 14 Si 0.960 3.040 15 H -0.265 1.265 16 H -0.278 1.278 17 H -0.281 1.281 18 C 0.074 3.926 19 C -0.130 4.130 20 C -0.172 4.172 21 C -0.084 4.084 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.057 0.943 25 H 0.179 0.821 26 H 0.165 0.835 27 H 0.103 0.897 28 H 0.031 0.969 29 H -0.034 1.034 30 H 0.008 0.992 31 H 0.262 0.738 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.026 0.974 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.764 4.822 10.403 11.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.144 4.144 3 C -0.076 4.076 4 N -0.212 5.212 5 C -0.059 4.059 6 C -0.122 4.122 7 C -0.031 4.031 8 N -0.255 5.255 9 C 0.084 3.916 10 C -0.557 4.557 11 H 0.076 0.924 12 C -0.194 4.194 13 N -0.572 5.572 14 Si 0.785 3.215 15 H -0.190 1.190 16 H -0.203 1.203 17 H -0.207 1.207 18 C -0.035 4.035 19 C -0.187 4.187 20 C -0.231 4.231 21 C -0.111 4.111 22 H 0.109 0.891 23 H 0.104 0.896 24 H 0.076 0.924 25 H 0.196 0.804 26 H 0.182 0.818 27 H 0.121 0.879 28 H 0.049 0.951 29 H -0.017 1.017 30 H 0.026 0.974 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.244 5.989 10.106 12.187 hybrid contribution -1.047 -1.998 -0.864 2.416 sum 2.197 3.991 9.242 10.304 Atomic orbital electron populations 1.20740 0.88363 1.03507 1.03546 1.21203 0.99076 0.93546 1.00561 1.23034 0.89809 0.98280 0.96502 1.67668 1.09194 1.31496 1.12794 1.22702 1.00744 0.86802 0.95630 1.20922 0.94356 0.97216 0.99681 1.20987 0.98497 0.92197 0.91394 1.62257 1.09886 1.42756 1.10613 1.19356 0.88455 0.91635 0.92177 1.21500 0.97961 1.42996 0.93198 0.92447 1.25800 0.94882 0.95291 1.03449 1.70075 1.04754 1.46628 1.35723 0.85473 0.78563 0.77728 0.79734 1.18953 1.20327 1.20703 1.21689 0.92029 0.90538 0.99212 1.21766 0.95132 1.00719 1.01101 1.22343 1.01136 0.99493 1.00086 1.21567 0.94153 0.98615 0.96754 0.89060 0.89558 0.92404 0.80357 0.81765 0.87856 0.95122 1.01655 0.97436 0.92908 0.92005 0.91671 0.90936 0.92954 0.95449 0.90818 0.91596 0.86348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.43 10.04 71.24 0.72 -1.72 16 2 C -0.14 -4.34 5.90 -19.78 -0.12 -4.46 16 3 C 0.08 2.41 10.86 84.69 0.92 3.33 16 4 N -0.50 -16.93 10.36 -195.83 -2.03 -18.96 16 5 C 0.10 3.29 10.88 84.67 0.92 4.21 16 6 C -0.12 -4.23 4.93 -19.78 -0.10 -4.33 16 7 C 0.10 3.36 3.73 85.56 0.32 3.68 16 8 N -0.53 -22.14 4.36 -880.06 -3.84 -25.98 16 9 C 0.21 10.99 4.46 85.55 0.38 11.37 16 10 C -0.52 -29.51 8.31 25.60 0.21 -29.29 16 11 H 0.06 3.26 7.23 -2.91 -0.02 3.24 16 12 C 0.00 0.21 5.46 84.65 0.46 0.67 16 13 N -0.93 -55.95 13.29 21.45 0.28 -55.66 16 14 Si 0.96 44.96 29.54 68.60 2.03 46.99 16 15 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 C 0.07 2.68 2.76 44.91 0.12 2.81 16 19 C -0.13 -3.57 9.24 71.98 0.66 -2.91 16 20 C -0.17 -5.61 8.44 71.98 0.61 -5.00 16 21 C -0.08 -2.99 8.16 22.47 0.18 -2.81 16 22 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.09 1.68 8.09 -2.39 -0.02 1.66 16 24 H 0.06 1.50 8.09 -2.39 -0.02 1.48 16 25 H 0.18 3.98 8.06 -2.91 -0.02 3.95 16 26 H 0.17 4.84 8.06 -2.91 -0.02 4.81 16 27 H 0.10 2.93 6.09 -2.39 -0.01 2.91 16 28 H 0.03 1.09 7.08 -2.38 -0.02 1.07 16 29 H -0.03 -1.94 6.60 -2.39 -0.02 -1.95 16 30 H 0.01 0.43 6.20 -2.39 -0.01 0.42 16 31 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 32 H 0.06 2.64 6.60 -2.39 -0.02 2.62 16 33 H 0.06 1.56 6.41 -2.39 -0.02 1.54 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.03 1.05 6.74 -2.39 -0.02 1.03 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.07 1.88 6.64 -2.39 -0.02 1.87 16 39 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -66.39 312.89 2.76 -63.63 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 1.02 Total: 14.42 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: 5.30 Total: -24.44 kcal Atomic # 7 Polarization: -95.02 SS G_CDS: -5.58 Total: -100.60 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -66.39 2.76 -63.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227302001.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.219 kcal (2) G-P(sol) polarization free energy of solvation -66.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds