Wall clock time and date at job start Mon Mar 30 2020 06:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47183 * 2 1 4 4 H 1.09003 * 109.46912 * 305.80827 * 3 2 1 5 5 C 1.50697 * 109.47658 * 185.80590 * 3 2 1 6 6 H 1.08005 * 119.99710 * 335.21768 * 5 3 2 7 7 C 1.37875 * 120.00441 * 155.21902 * 5 3 2 8 8 N 1.31519 * 119.99819 * 355.33934 * 7 5 3 9 9 Si 1.86802 * 120.00006 * 175.34302 * 7 5 3 10 10 H 1.48499 * 109.47073 * 60.00081 * 9 7 5 11 11 H 1.48500 * 109.46912 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47084 * 299.99584 * 9 7 5 13 13 N 1.46507 * 109.47193 * 65.80388 * 3 2 1 14 14 C 1.39665 * 120.00103 * 275.00323 * 13 3 2 15 15 C 1.38997 * 120.03634 * 359.97438 * 14 13 3 16 16 C 1.38133 * 120.07216 * 180.02562 * 15 14 13 17 17 C 1.38177 * 120.15011 * 359.94911 * 16 15 14 18 18 C 1.38955 * 120.07189 * 0.05126 * 17 16 15 19 19 N 1.39666 * 120.03609 * 179.97438 * 18 17 16 20 20 C 1.46499 * 120.00300 * 0.02562 * 19 18 17 21 21 C 1.46500 * 119.99714 * 179.97438 * 19 18 17 22 22 C 1.38749 * 120.03874 * 179.72651 * 14 13 3 23 23 H 1.08999 * 109.47112 * 300.00012 * 1 2 3 24 24 H 1.09003 * 109.47394 * 59.99938 * 1 2 3 25 25 H 1.08999 * 109.46903 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47618 * 239.99979 * 2 1 3 27 27 H 1.09003 * 109.47394 * 120.00062 * 2 1 3 28 28 H 0.96993 * 119.99781 * 5.27894 * 8 7 5 29 29 H 0.96998 * 119.99984 * 95.00328 * 13 3 2 30 30 H 1.08000 * 119.96432 * 359.97438 * 15 14 13 31 31 H 1.08001 * 119.92568 * 179.97438 * 16 15 14 32 32 H 1.07996 * 119.96183 * 180.02562 * 17 16 15 33 33 H 1.09007 * 109.47197 * 59.99121 * 20 19 18 34 34 H 1.08995 * 109.47324 * 179.97438 * 20 19 18 35 35 H 1.09005 * 109.46452 * 300.00016 * 20 19 18 36 36 H 1.08995 * 109.46907 * 90.00236 * 21 19 18 37 37 H 1.09006 * 109.46838 * 210.00118 * 21 19 18 38 38 H 1.09004 * 109.47261 * 329.99953 * 21 19 18 39 39 H 1.08003 * 120.07265 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5942 1.9854 -0.8334 5 6 3.5401 1.4450 -0.1437 6 1 4.1137 0.5840 0.1662 7 6 4.1803 2.5465 -0.6708 8 7 3.4771 3.5574 -1.1327 9 14 6.0466 2.6030 -0.7290 10 1 6.5508 1.4700 -1.5458 11 1 6.4842 3.8848 -1.3378 12 1 6.5881 2.4990 0.6497 13 7 1.6690 2.0916 1.2599 14 6 0.4092 2.6785 1.3987 15 6 -0.4930 2.6475 0.3418 16 6 -1.7389 3.2282 0.4781 17 6 -2.0931 3.8405 1.6650 18 6 -1.1960 3.8750 2.7256 19 7 -1.5546 4.4946 3.9248 20 6 -2.8775 5.1082 4.0653 21 6 -0.6083 4.5300 5.0425 22 6 0.0550 3.2885 2.5935 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.5122 3.5624 -1.0334 29 1 2.2983 2.1139 1.9977 30 1 -0.2192 2.1697 -0.5873 31 1 -2.4379 3.2031 -0.3448 32 1 -3.0682 4.2931 1.7684 33 1 -3.6470 4.3499 3.9202 34 1 -2.9747 5.5379 5.0622 35 1 -2.9952 5.8929 3.3179 36 1 0.0034 5.4294 4.9723 37 1 -1.1579 4.5369 5.9838 38 1 0.0337 3.6499 5.0031 39 1 0.7525 3.3100 3.4178 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227986625.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:47 Heat of formation + Delta-G solvation = 29.856490 kcal Electronic energy + Delta-G solvation = -18385.098288 eV Core-core repulsion = 15713.401616 eV Total energy + Delta-G solvation = -2671.696672 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.18413 -37.02731 -34.92946 -32.42486 -31.77103 -29.51940 -28.87649 -27.65500 -25.62379 -24.44120 -22.98816 -21.37210 -20.84658 -19.12536 -17.28825 -16.94413 -15.52355 -14.94020 -14.85052 -14.80025 -14.21526 -13.83519 -13.67786 -13.13892 -12.88838 -12.82314 -12.53874 -12.22815 -12.03703 -11.89824 -11.77315 -11.13317 -10.89101 -10.82490 -10.67472 -10.39898 -10.33066 -10.16018 -9.87892 -9.29176 -8.90308 -8.68933 -8.43517 -6.96153 -6.51202 -6.24492 -4.31780 2.30725 2.55799 3.36327 3.37433 3.44856 3.57181 4.40484 4.62579 4.73291 5.11707 5.24181 5.41169 5.42137 5.60057 5.68111 5.74669 5.79718 5.89386 5.91719 5.99256 6.17195 6.22843 6.31181 6.39766 6.44149 6.68231 6.70037 6.86495 6.93326 7.00403 7.22666 7.25957 7.36032 7.42663 7.71229 7.87121 8.04942 8.28020 8.61240 8.72544 9.01477 9.48521 10.86491 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.024455 B = 0.006215 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.675319 B = 4504.249458 C = 5054.357613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C 0.246 3.754 4 H 0.046 0.954 5 C -0.610 4.610 6 H 0.053 0.947 7 C 0.032 3.968 8 N -0.890 5.890 9 Si 1.068 2.932 10 H -0.286 1.286 11 H -0.282 1.282 12 H -0.287 1.287 13 N -0.717 5.717 14 C 0.272 3.728 15 C -0.250 4.250 16 C -0.038 4.038 17 C -0.274 4.274 18 C 0.249 3.751 19 N -0.645 5.645 20 C 0.104 3.896 21 C 0.098 3.902 22 C -0.293 4.293 23 H 0.063 0.937 24 H 0.050 0.950 25 H 0.031 0.969 26 H 0.056 0.944 27 H 0.046 0.954 28 H 0.277 0.723 29 H 0.385 0.615 30 H 0.122 0.878 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.041 0.959 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.276 0.421 8.346 12.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C 0.145 3.855 4 H 0.064 0.936 5 C -0.648 4.648 6 H 0.072 0.928 7 C -0.177 4.177 8 N -0.523 5.523 9 Si 0.896 3.104 10 H -0.213 1.213 11 H -0.207 1.207 12 H -0.213 1.213 13 N -0.339 5.339 14 C 0.161 3.839 15 C -0.273 4.273 16 C -0.058 4.058 17 C -0.298 4.298 18 C 0.149 3.851 19 N -0.359 5.359 20 C -0.039 4.039 21 C -0.045 4.045 22 C -0.321 4.321 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.218 0.782 30 H 0.140 0.860 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.963 1.291 7.745 11.183 hybrid contribution -1.066 -0.841 0.943 1.653 sum -9.029 0.450 8.688 12.538 Atomic orbital electron populations 1.22219 0.97553 0.99480 1.01925 1.21911 0.93944 0.99774 1.00492 1.18860 0.95214 0.88138 0.83290 0.93620 1.22077 0.91221 1.04051 1.47488 0.92820 1.25955 1.07095 0.92490 0.92128 1.70753 1.09686 1.32310 1.39595 0.83557 0.74016 0.76280 0.76547 1.21256 1.20701 1.21319 1.46715 1.11286 1.58310 1.17627 1.17872 0.86342 0.87821 0.91876 1.20738 0.95276 1.11475 0.99852 1.20481 0.95308 0.94294 0.95681 1.20088 1.00261 1.14630 0.94862 1.17389 0.92611 0.90229 0.84878 1.46194 1.15190 1.62304 1.12175 1.21451 0.84319 0.97159 1.01015 1.21551 0.93128 1.01611 0.88235 1.19931 0.97887 1.15252 0.99005 0.91860 0.93125 0.94966 0.92548 0.93542 0.91135 0.78167 0.85985 0.87440 0.87812 0.93318 0.91729 0.93239 0.94003 0.92399 0.91376 0.87280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.23 37.15 0.31 -2.58 16 2 C -0.12 -2.58 5.58 -26.73 -0.15 -2.72 16 3 C 0.25 5.89 1.92 -69.08 -0.13 5.76 16 4 H 0.05 1.20 5.02 -51.93 -0.26 0.94 16 5 C -0.61 -16.16 8.50 -34.44 -0.29 -16.45 16 6 H 0.05 1.42 7.81 -52.48 -0.41 1.01 16 7 C 0.03 0.88 5.46 -17.82 -0.10 0.78 16 8 N -0.89 -26.06 13.63 55.43 0.76 -25.30 16 9 Si 1.07 24.17 29.91 -169.99 -5.08 19.08 16 10 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.72 -16.03 5.18 -53.31 -0.28 -16.30 16 14 C 0.27 5.74 5.52 -83.82 -0.46 5.27 16 15 C -0.25 -5.06 6.71 -39.34 -0.26 -5.32 16 16 C -0.04 -0.68 10.03 -39.64 -0.40 -1.08 16 17 C -0.27 -4.76 9.31 -39.34 -0.37 -5.12 16 18 C 0.25 4.44 6.55 -83.82 -0.55 3.89 16 19 N -0.64 -9.43 3.41 -187.57 -0.64 -10.07 16 20 C 0.10 1.18 9.40 59.85 0.56 1.74 16 21 C 0.10 1.20 10.16 59.85 0.61 1.81 16 22 C -0.29 -5.67 9.05 -39.19 -0.35 -6.02 16 23 H 0.06 1.23 5.36 -51.93 -0.28 0.95 16 24 H 0.05 0.92 6.41 -51.93 -0.33 0.59 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.28 8.21 6.66 -40.82 -0.27 7.94 16 29 H 0.38 8.50 8.60 -40.82 -0.35 8.15 16 30 H 0.12 2.56 3.99 -52.49 -0.21 2.35 16 31 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 32 H 0.10 1.57 6.72 -52.49 -0.35 1.22 16 33 H 0.05 0.53 7.95 -51.93 -0.41 0.12 16 34 H 0.06 0.57 7.79 -51.93 -0.40 0.16 16 35 H 0.05 0.56 7.95 -51.93 -0.41 0.14 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.56 7.92 -51.93 -0.41 0.14 16 38 H 0.07 0.87 6.19 -51.93 -0.32 0.55 16 39 H 0.11 1.99 6.13 -52.48 -0.32 1.67 16 LS Contribution 304.98 15.07 4.60 4.60 Total: -1.00 -29.16 304.98 -7.90 -37.06 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -5.66 Total: 10.99 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -1.59 Total: -20.05 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.16 Total: -51.68 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.08 Total: 19.08 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.16 -7.90 -37.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227986625.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.916 kcal (2) G-P(sol) polarization free energy of solvation -29.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds