Wall clock time and date at job start Mon Mar 30 2020 06:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47183 * 2 1 4 4 H 1.09003 * 109.46912 * 305.80827 * 3 2 1 5 5 C 1.50697 * 109.47658 * 185.80590 * 3 2 1 6 6 H 1.08005 * 119.99710 * 335.21768 * 5 3 2 7 7 C 1.37875 * 120.00441 * 155.21902 * 5 3 2 8 8 N 1.31519 * 119.99819 * 355.33934 * 7 5 3 9 9 Si 1.86802 * 120.00006 * 175.34302 * 7 5 3 10 10 H 1.48499 * 109.47073 * 60.00081 * 9 7 5 11 11 H 1.48500 * 109.46912 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47084 * 299.99584 * 9 7 5 13 13 N 1.46507 * 109.47193 * 65.80388 * 3 2 1 14 14 C 1.39665 * 120.00103 * 275.00323 * 13 3 2 15 15 C 1.38997 * 120.03634 * 359.97438 * 14 13 3 16 16 C 1.38133 * 120.07216 * 180.02562 * 15 14 13 17 17 C 1.38177 * 120.15011 * 359.94911 * 16 15 14 18 18 C 1.38955 * 120.07189 * 0.05126 * 17 16 15 19 19 N 1.39666 * 120.03609 * 179.97438 * 18 17 16 20 20 C 1.46499 * 120.00300 * 0.02562 * 19 18 17 21 21 C 1.46500 * 119.99714 * 179.97438 * 19 18 17 22 22 C 1.38749 * 120.03874 * 179.72651 * 14 13 3 23 23 H 1.08999 * 109.47112 * 300.00012 * 1 2 3 24 24 H 1.09003 * 109.47394 * 59.99938 * 1 2 3 25 25 H 1.08999 * 109.46903 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47618 * 239.99979 * 2 1 3 27 27 H 1.09003 * 109.47394 * 120.00062 * 2 1 3 28 28 H 0.96993 * 119.99781 * 5.27894 * 8 7 5 29 29 H 0.96998 * 119.99984 * 95.00328 * 13 3 2 30 30 H 1.08000 * 119.96432 * 359.97438 * 15 14 13 31 31 H 1.08001 * 119.92568 * 179.97438 * 16 15 14 32 32 H 1.07996 * 119.96183 * 180.02562 * 17 16 15 33 33 H 1.09007 * 109.47197 * 59.99121 * 20 19 18 34 34 H 1.08995 * 109.47324 * 179.97438 * 20 19 18 35 35 H 1.09005 * 109.46452 * 300.00016 * 20 19 18 36 36 H 1.08995 * 109.46907 * 90.00236 * 21 19 18 37 37 H 1.09006 * 109.46838 * 210.00118 * 21 19 18 38 38 H 1.09004 * 109.47261 * 329.99953 * 21 19 18 39 39 H 1.08003 * 120.07265 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5942 1.9854 -0.8334 5 6 3.5401 1.4450 -0.1437 6 1 4.1137 0.5840 0.1662 7 6 4.1803 2.5465 -0.6708 8 7 3.4771 3.5574 -1.1327 9 14 6.0466 2.6030 -0.7290 10 1 6.5508 1.4700 -1.5458 11 1 6.4842 3.8848 -1.3378 12 1 6.5881 2.4990 0.6497 13 7 1.6690 2.0916 1.2599 14 6 0.4092 2.6785 1.3987 15 6 -0.4930 2.6475 0.3418 16 6 -1.7389 3.2282 0.4781 17 6 -2.0931 3.8405 1.6650 18 6 -1.1960 3.8750 2.7256 19 7 -1.5546 4.4946 3.9248 20 6 -2.8775 5.1082 4.0653 21 6 -0.6083 4.5300 5.0425 22 6 0.0550 3.2885 2.5935 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.5122 3.5624 -1.0334 29 1 2.2983 2.1139 1.9977 30 1 -0.2192 2.1697 -0.5873 31 1 -2.4379 3.2031 -0.3448 32 1 -3.0682 4.2931 1.7684 33 1 -3.6470 4.3499 3.9202 34 1 -2.9747 5.5379 5.0622 35 1 -2.9952 5.8929 3.3179 36 1 0.0034 5.4294 4.9723 37 1 -1.1579 4.5369 5.9838 38 1 0.0337 3.6499 5.0031 39 1 0.7525 3.3100 3.4178 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227986625.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:47 Heat of formation + Delta-G solvation = 13.087215 kcal Electronic energy + Delta-G solvation = -18385.825459 eV Core-core repulsion = 15713.401616 eV Total energy + Delta-G solvation = -2672.423843 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.63994 -38.51695 -36.41002 -34.33580 -33.38781 -30.87130 -30.30860 -28.92595 -27.36704 -25.66233 -24.86774 -22.80605 -22.41884 -20.68453 -19.13512 -18.42869 -17.00492 -16.43376 -16.25830 -15.89642 -15.76334 -15.57473 -15.35167 -14.66883 -14.44960 -14.35464 -13.86727 -13.44609 -13.39652 -12.99997 -12.92755 -12.76121 -12.60198 -12.56022 -12.28934 -11.98633 -11.93098 -11.76781 -11.44563 -10.95446 -10.72548 -10.47439 -10.20260 -8.67338 -8.32314 -7.79990 -6.47434 0.84217 1.07585 1.53398 1.59150 1.79457 2.33340 2.53542 2.85351 3.24583 3.44178 4.12364 4.21502 4.27325 4.38428 4.43013 4.48963 4.52996 4.56144 4.68312 4.79463 4.83155 4.88001 4.90467 4.95589 4.97851 5.08209 5.11457 5.22609 5.36298 5.50417 5.51374 5.70295 5.89350 5.90850 6.01175 6.15260 6.50532 6.53479 6.70224 6.93678 7.28556 7.41006 8.70257 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.024455 B = 0.006215 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.675319 B = 4504.249458 C = 5054.357613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C 0.252 3.748 4 H 0.016 0.984 5 C -0.619 4.619 6 H 0.051 0.949 7 C -0.015 4.015 8 N -0.921 5.921 9 Si 1.114 2.886 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.271 1.271 13 N -0.726 5.726 14 C 0.252 3.748 15 C -0.270 4.270 16 C -0.037 4.037 17 C -0.271 4.271 18 C 0.247 3.753 19 N -0.647 5.647 20 C 0.097 3.903 21 C 0.093 3.907 22 C -0.305 4.305 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.261 0.739 29 H 0.382 0.618 30 H 0.107 0.893 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.042 0.958 37 H 0.090 0.910 38 H 0.057 0.943 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.527 0.620 9.822 14.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.156 4.156 3 C 0.150 3.850 4 H 0.034 0.966 5 C -0.657 4.657 6 H 0.070 0.930 7 C -0.217 4.217 8 N -0.557 5.557 9 Si 0.936 3.064 10 H -0.194 1.194 11 H -0.214 1.214 12 H -0.196 1.196 13 N -0.349 5.349 14 C 0.143 3.857 15 C -0.295 4.295 16 C -0.057 4.057 17 C -0.295 4.295 18 C 0.144 3.856 19 N -0.359 5.359 20 C -0.045 4.045 21 C -0.050 4.050 22 C -0.333 4.333 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.216 0.784 30 H 0.125 0.875 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.264 1.494 9.265 13.187 hybrid contribution -0.830 -0.856 0.593 1.332 sum -10.094 0.638 9.858 14.124 Atomic orbital electron populations 1.22061 0.95476 1.00816 1.01501 1.21816 0.95792 0.97784 1.00223 1.18631 0.93836 0.89421 0.83093 0.96587 1.22408 0.92779 1.03736 1.46799 0.93047 1.27292 1.10829 0.92084 0.91470 1.70878 1.08868 1.33713 1.42206 0.82968 0.69433 0.76419 0.77552 1.19424 1.21373 1.19591 1.46195 1.12207 1.59762 1.16772 1.18044 0.85875 0.88744 0.93032 1.20733 0.96456 1.13026 0.99243 1.20791 0.94725 0.93250 0.96884 1.20428 1.01211 1.13668 0.94223 1.17567 0.91950 0.89654 0.86399 1.46514 1.16709 1.61281 1.11414 1.21695 0.82613 0.97300 1.02940 1.21709 0.93287 1.01155 0.88884 1.20048 0.99026 1.15681 0.98594 0.92658 0.93224 0.92562 0.92914 0.93500 0.92793 0.78449 0.87495 0.84882 0.85103 0.92583 0.88783 0.93096 0.93898 0.89117 0.92427 0.86921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.25 8.23 71.98 0.59 -4.66 16 2 C -0.12 -5.01 5.58 30.59 0.17 -4.84 16 3 C 0.25 12.53 1.92 44.24 0.08 12.62 16 4 H 0.02 0.90 5.02 -2.39 -0.01 0.89 16 5 C -0.62 -33.58 8.50 25.60 0.22 -33.36 16 6 H 0.05 2.75 7.81 -2.91 -0.02 2.72 16 7 C -0.01 -0.82 5.46 84.65 0.46 -0.36 16 8 N -0.92 -55.74 13.63 21.45 0.29 -55.45 16 9 Si 1.11 49.01 29.91 68.60 2.05 51.06 16 10 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 13 N -0.73 -33.59 5.18 -322.57 -1.67 -35.26 16 14 C 0.25 10.85 5.52 38.20 0.21 11.06 16 15 C -0.27 -11.13 6.71 22.43 0.15 -10.98 16 16 C -0.04 -1.29 10.03 22.23 0.22 -1.07 16 17 C -0.27 -8.82 9.31 22.43 0.21 -8.61 16 18 C 0.25 8.40 6.55 38.20 0.25 8.66 16 19 N -0.65 -17.19 3.41 -747.35 -2.55 -19.74 16 20 C 0.10 1.83 9.40 127.77 1.20 3.03 16 21 C 0.09 2.04 10.16 127.77 1.30 3.34 16 22 C -0.31 -11.82 9.05 22.53 0.20 -11.61 16 23 H 0.05 2.15 5.36 -2.39 -0.01 2.14 16 24 H 0.05 1.83 6.41 -2.39 -0.02 1.81 16 25 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.26 16.28 6.66 -92.71 -0.62 15.66 16 29 H 0.38 17.57 8.60 -92.71 -0.80 16.77 16 30 H 0.11 4.67 3.99 -2.91 -0.01 4.65 16 31 H 0.13 3.85 8.06 -2.91 -0.02 3.82 16 32 H 0.13 3.51 6.72 -2.91 -0.02 3.49 16 33 H 0.06 1.00 7.95 -2.38 -0.02 0.98 16 34 H 0.09 1.23 7.79 -2.39 -0.02 1.21 16 35 H 0.05 0.97 7.95 -2.38 -0.02 0.95 16 36 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.09 1.41 7.92 -2.38 -0.02 1.39 16 38 H 0.06 1.39 6.19 -2.38 -0.01 1.38 16 39 H 0.11 4.15 6.13 -2.91 -0.02 4.13 16 Total: -1.00 -63.97 304.98 3.80 -60.17 By element: Atomic # 1 Polarization: 35.62 SS G_CDS: 0.40 Total: 36.02 kcal Atomic # 6 Polarization: -42.07 SS G_CDS: 5.27 Total: -36.80 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -3.93 Total: -110.45 kcal Atomic # 14 Polarization: 49.01 SS G_CDS: 2.05 Total: 51.06 kcal Total: -63.97 3.80 -60.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227986625.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.256 kcal (2) G-P(sol) polarization free energy of solvation -63.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds