Wall clock time and date at job start Mon Mar 30 2020 05:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38532 * 120.82121 * 2 1 4 4 C 1.38236 * 119.24700 * 179.97438 * 3 2 1 5 5 N 1.31878 * 120.92354 * 0.02562 * 4 3 2 6 6 C 1.31789 * 121.80676 * 359.97438 * 5 4 3 7 7 C 1.38941 * 120.64948 * 359.74626 * 6 5 4 8 8 N 1.39707 * 120.49084 * 180.26048 * 7 6 5 9 9 C 1.46502 * 120.00110 * 0.27040 * 8 7 6 10 10 C 1.53000 * 109.46901 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.47365 * 299.99784 * 10 9 8 12 12 C 1.52996 * 109.47286 * 59.99896 * 10 9 8 13 13 C 1.52999 * 109.46977 * 179.97438 * 10 9 8 14 14 C 1.50698 * 109.47395 * 180.02562 * 13 10 9 15 15 H 1.07998 * 119.99667 * 359.97438 * 14 13 10 16 16 C 1.37878 * 120.00070 * 180.02562 * 14 13 10 17 17 N 1.31517 * 120.00208 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99968 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47029 * 89.99437 * 18 16 14 20 20 H 1.48493 * 109.47299 * 209.99941 * 18 16 14 21 21 H 1.48504 * 109.46848 * 330.00012 * 18 16 14 22 22 H 1.09002 * 109.47152 * 90.00292 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.00393 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.00373 * 1 2 3 25 25 H 1.08006 * 120.38034 * 359.94912 * 3 2 1 26 26 H 1.07998 * 119.53517 * 179.97438 * 4 3 2 27 27 H 1.07998 * 119.67398 * 179.97438 * 6 5 4 28 28 H 0.96996 * 119.99801 * 180.26518 * 8 7 6 29 29 H 1.09004 * 109.46891 * 299.99728 * 9 8 7 30 30 H 1.09001 * 109.47318 * 59.99913 * 9 8 7 31 31 H 1.09004 * 109.47020 * 59.99776 * 11 10 9 32 32 H 1.08995 * 109.47440 * 180.02562 * 11 10 9 33 33 H 1.09001 * 109.47093 * 300.00129 * 11 10 9 34 34 H 1.09004 * 109.47207 * 59.99739 * 12 10 9 35 35 H 1.08997 * 109.47164 * 179.97438 * 12 10 9 36 36 H 1.08995 * 109.47406 * 300.00199 * 12 10 9 37 37 H 1.08998 * 109.47184 * 300.00333 * 13 10 9 38 38 H 1.09003 * 109.47111 * 59.99532 * 13 10 9 39 39 H 0.96996 * 120.00067 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1897 0.0000 4 6 3.5987 1.1517 0.0005 5 7 4.2450 0.0022 0.0005 6 6 3.6092 -1.1522 0.0005 7 6 2.2205 -1.1960 0.0058 8 7 1.5500 -2.4216 0.0113 9 6 2.3114 -3.6732 0.0174 10 6 1.3441 -4.8586 0.0232 11 6 0.4628 -4.7916 1.2721 12 6 0.4628 -4.8038 -1.2263 13 6 2.1392 -6.1657 0.0290 14 6 1.1865 -7.3333 0.0341 15 1 0.1205 -7.1603 0.0337 16 6 1.6758 -8.6223 0.0403 17 7 2.9740 -8.8329 0.0413 18 14 0.4949 -10.0696 0.0459 19 1 0.1830 -10.4593 -1.3527 20 1 1.1207 -11.2165 0.7516 21 1 -0.7581 -9.6834 0.7432 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5139 25 1 1.6965 2.1362 -0.0008 26 1 4.1566 2.0764 0.0001 27 1 4.1733 -2.0732 0.0001 28 1 0.5803 -2.4438 0.0111 29 1 2.9396 -3.7207 -0.8721 30 1 2.9389 -3.7124 0.9079 31 1 -0.1037 -3.8604 1.2676 32 1 -0.2260 -5.6363 1.2765 33 1 1.0906 -4.8307 2.1623 34 1 1.0907 -4.8515 -2.1161 35 1 -0.2260 -5.6486 -1.2223 36 1 -0.1036 -3.8727 -1.2309 37 1 2.7668 -6.2131 -0.8609 38 1 2.7674 -6.2049 0.9190 39 1 3.3183 -9.7397 0.0453 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229695730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:22 Heat of formation + Delta-G solvation = 11.631633 kcal Electronic energy + Delta-G solvation = -17987.249303 eV Core-core repulsion = 15314.762341 eV Total energy + Delta-G solvation = -2672.486962 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.20666 -37.74710 -34.88998 -33.30019 -32.24930 -29.47891 -27.72225 -26.94120 -26.55782 -26.07220 -23.28537 -21.92638 -21.72976 -18.36380 -17.01537 -16.58447 -16.21501 -15.81082 -14.73096 -14.59649 -14.31101 -13.97583 -13.91029 -13.04710 -13.01489 -12.87156 -12.65711 -12.48568 -12.45024 -12.10331 -11.50177 -11.34519 -11.06131 -10.88389 -10.70233 -10.46096 -10.29315 -10.28765 -9.83344 -9.32858 -9.25686 -9.24700 -8.97815 -8.39864 -7.31425 -6.04113 -4.05444 1.34574 1.57962 3.28281 3.35535 3.37068 3.60095 4.02315 4.42043 4.75698 4.79653 4.83400 5.09535 5.31551 5.36366 5.42600 5.47014 5.52218 5.53520 5.65752 5.78402 5.87502 6.08300 6.10896 6.13910 6.20134 6.31666 6.32897 6.58195 6.58774 6.76058 6.98056 7.01932 7.05071 7.39418 7.57897 7.70190 7.80187 7.94199 8.26014 8.36339 8.99105 9.58055 11.07341 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.043550 B = 0.004500 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.787903 B = 6221.027104 C = 6662.153577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.136 4.136 3 C -0.125 4.125 4 C 0.022 3.978 5 N -0.449 5.449 6 C 0.025 3.975 7 C 0.178 3.822 8 N -0.728 5.728 9 C 0.127 3.873 10 C -0.070 4.070 11 C -0.126 4.126 12 C -0.126 4.126 13 C 0.036 3.964 14 C -0.512 4.512 15 H 0.059 0.941 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.127 0.873 26 H 0.146 0.854 27 H 0.153 0.847 28 H 0.399 0.601 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.028 0.972 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.028 0.972 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.438 16.486 -0.090 17.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.148 4.148 3 C -0.145 4.145 4 C -0.136 4.136 5 N -0.157 5.157 6 C -0.139 4.139 7 C 0.069 3.931 8 N -0.357 5.357 9 C 0.004 3.996 10 C -0.071 4.071 11 C -0.184 4.184 12 C -0.184 4.184 13 C -0.001 4.001 14 C -0.551 4.551 15 H 0.077 0.923 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.145 0.855 26 H 0.164 0.836 27 H 0.170 0.830 28 H 0.237 0.763 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.047 0.953 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.284 16.144 -0.082 16.475 hybrid contribution -1.803 -0.923 -0.001 2.026 sum -5.088 15.221 -0.083 16.049 Atomic orbital electron populations 1.20586 0.90794 1.02606 1.02220 1.19764 0.96261 0.91798 1.07024 1.21726 0.95350 0.97538 0.99908 1.22307 0.91565 0.95904 1.03865 1.67443 1.40854 0.98178 1.09262 1.22348 0.89723 0.96573 1.05251 1.18840 0.93174 0.86603 0.94458 1.45074 1.08645 1.02367 1.79621 1.21699 0.94773 0.82354 1.00820 1.20860 0.95527 0.95581 0.95094 1.21749 0.99538 0.99818 0.97264 1.21749 0.99537 0.99836 0.97250 1.19096 0.94793 0.88808 0.97440 1.21172 0.92953 0.90535 1.50393 0.92297 1.25003 0.94945 0.98989 0.95477 1.69956 1.11616 1.21004 1.50800 0.86650 0.81160 0.82471 0.78056 1.20748 1.21293 1.19947 0.91248 0.91305 0.91879 0.85493 0.83641 0.82967 0.76313 0.92240 0.92269 0.95339 0.91447 0.93365 0.93363 0.91462 0.95305 0.96343 0.96338 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.65 36.01 0.35 -0.66 16 2 C -0.14 -1.67 5.93 -104.13 -0.62 -2.29 16 3 C -0.12 -1.41 9.81 -39.47 -0.39 -1.80 16 4 C 0.02 0.28 11.18 -17.53 -0.20 0.09 16 5 N -0.45 -6.81 10.35 -13.08 -0.14 -6.95 16 6 C 0.02 0.37 10.49 -17.31 -0.18 0.19 16 7 C 0.18 2.52 6.66 -83.63 -0.56 1.96 16 8 N -0.73 -10.22 5.06 -58.52 -0.30 -10.52 16 9 C 0.13 2.05 3.82 -4.04 -0.02 2.03 16 10 C -0.07 -1.29 0.54 -154.51 -0.08 -1.37 16 11 C -0.13 -2.19 8.05 37.15 0.30 -1.89 16 12 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 13 C 0.04 0.86 4.04 -27.88 -0.11 0.74 16 14 C -0.51 -13.38 7.65 -34.44 -0.26 -13.64 16 15 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 17 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 18 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 24 H 0.06 0.61 6.65 -51.93 -0.35 0.26 16 25 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 26 H 0.15 1.43 8.06 -52.49 -0.42 1.00 16 27 H 0.15 2.25 6.76 -52.49 -0.35 1.89 16 28 H 0.40 5.22 4.30 -40.82 -0.18 5.04 16 29 H 0.06 0.98 7.96 -51.93 -0.41 0.56 16 30 H 0.06 0.97 7.98 -51.93 -0.41 0.56 16 31 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 32 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 36 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 310.40 15.07 4.68 4.68 Total: -1.00 -28.91 310.40 -7.52 -36.43 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.92 Total: 2.73 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -1.57 Total: -17.06 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.31 Total: -42.73 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.91 -7.52 -36.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229695730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.065 kcal (2) G-P(sol) polarization free energy of solvation -28.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds