Wall clock time and date at job start Mon Mar 30 2020 05:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38532 * 120.82121 * 2 1 4 4 C 1.38236 * 119.24700 * 179.97438 * 3 2 1 5 5 N 1.31878 * 120.92354 * 0.02562 * 4 3 2 6 6 C 1.31789 * 121.80676 * 359.97438 * 5 4 3 7 7 C 1.38941 * 120.64948 * 359.74626 * 6 5 4 8 8 N 1.39707 * 120.49084 * 180.26048 * 7 6 5 9 9 C 1.46502 * 120.00110 * 0.27040 * 8 7 6 10 10 C 1.53000 * 109.46901 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.47365 * 299.99784 * 10 9 8 12 12 C 1.52996 * 109.47286 * 59.99896 * 10 9 8 13 13 C 1.52999 * 109.46977 * 179.97438 * 10 9 8 14 14 C 1.50698 * 109.47395 * 180.02562 * 13 10 9 15 15 H 1.07998 * 119.99667 * 359.97438 * 14 13 10 16 16 C 1.37878 * 120.00070 * 180.02562 * 14 13 10 17 17 N 1.31517 * 120.00208 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99968 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47029 * 89.99437 * 18 16 14 20 20 H 1.48493 * 109.47299 * 209.99941 * 18 16 14 21 21 H 1.48504 * 109.46848 * 330.00012 * 18 16 14 22 22 H 1.09002 * 109.47152 * 90.00292 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.00393 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.00373 * 1 2 3 25 25 H 1.08006 * 120.38034 * 359.94912 * 3 2 1 26 26 H 1.07998 * 119.53517 * 179.97438 * 4 3 2 27 27 H 1.07998 * 119.67398 * 179.97438 * 6 5 4 28 28 H 0.96996 * 119.99801 * 180.26518 * 8 7 6 29 29 H 1.09004 * 109.46891 * 299.99728 * 9 8 7 30 30 H 1.09001 * 109.47318 * 59.99913 * 9 8 7 31 31 H 1.09004 * 109.47020 * 59.99776 * 11 10 9 32 32 H 1.08995 * 109.47440 * 180.02562 * 11 10 9 33 33 H 1.09001 * 109.47093 * 300.00129 * 11 10 9 34 34 H 1.09004 * 109.47207 * 59.99739 * 12 10 9 35 35 H 1.08997 * 109.47164 * 179.97438 * 12 10 9 36 36 H 1.08995 * 109.47406 * 300.00199 * 12 10 9 37 37 H 1.08998 * 109.47184 * 300.00333 * 13 10 9 38 38 H 1.09003 * 109.47111 * 59.99532 * 13 10 9 39 39 H 0.96996 * 120.00067 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1897 0.0000 4 6 3.5987 1.1517 0.0005 5 7 4.2450 0.0022 0.0005 6 6 3.6092 -1.1522 0.0005 7 6 2.2205 -1.1960 0.0058 8 7 1.5500 -2.4216 0.0113 9 6 2.3114 -3.6732 0.0174 10 6 1.3441 -4.8586 0.0232 11 6 0.4628 -4.7916 1.2721 12 6 0.4628 -4.8038 -1.2263 13 6 2.1392 -6.1657 0.0290 14 6 1.1865 -7.3333 0.0341 15 1 0.1205 -7.1603 0.0337 16 6 1.6758 -8.6223 0.0403 17 7 2.9740 -8.8329 0.0413 18 14 0.4949 -10.0696 0.0459 19 1 0.1830 -10.4593 -1.3527 20 1 1.1207 -11.2165 0.7516 21 1 -0.7581 -9.6834 0.7432 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5139 25 1 1.6965 2.1362 -0.0008 26 1 4.1566 2.0764 0.0001 27 1 4.1733 -2.0732 0.0001 28 1 0.5803 -2.4438 0.0111 29 1 2.9396 -3.7207 -0.8721 30 1 2.9389 -3.7124 0.9079 31 1 -0.1037 -3.8604 1.2676 32 1 -0.2260 -5.6363 1.2765 33 1 1.0906 -4.8307 2.1623 34 1 1.0907 -4.8515 -2.1161 35 1 -0.2260 -5.6486 -1.2223 36 1 -0.1036 -3.8727 -1.2309 37 1 2.7668 -6.2131 -0.8609 38 1 2.7674 -6.2049 0.9190 39 1 3.3183 -9.7397 0.0453 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229695730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:22 Heat of formation + Delta-G solvation = -4.856038 kcal Electronic energy + Delta-G solvation = -17987.964262 eV Core-core repulsion = 15314.762341 eV Total energy + Delta-G solvation = -2673.201921 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.23729 -39.16115 -36.16993 -34.61852 -33.89119 -30.62137 -29.04991 -28.34788 -27.98878 -27.40981 -25.00320 -23.08212 -22.79868 -19.81997 -18.38757 -18.16638 -17.50270 -16.85652 -16.46194 -15.94784 -15.53791 -15.13442 -15.10006 -14.46726 -14.44891 -14.02984 -13.95373 -13.65487 -13.47911 -13.43495 -12.94313 -12.74026 -12.67766 -12.39024 -12.35350 -12.22714 -11.97217 -11.69003 -11.22689 -11.00029 -10.86247 -10.51381 -10.33664 -10.18082 -8.40960 -8.14719 -6.22006 0.36351 0.57746 1.41793 1.42188 1.52262 2.39705 2.49520 3.01314 3.20026 3.76707 3.90330 3.91717 4.01435 4.08316 4.16098 4.27664 4.50224 4.67579 4.71434 4.72601 4.74562 4.79637 4.82352 4.94532 5.07325 5.09788 5.11893 5.26810 5.39573 5.41929 5.48380 5.50469 5.54794 5.79199 5.79636 5.89505 6.21235 6.33842 6.76164 6.92990 7.24332 7.45726 8.97591 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.043550 B = 0.004500 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.787903 B = 6221.027104 C = 6662.153577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.133 4.133 3 C -0.119 4.119 4 C 0.018 3.982 5 N -0.480 5.480 6 C -0.002 4.002 7 C 0.163 3.837 8 N -0.723 5.723 9 C 0.143 3.857 10 C -0.063 4.063 11 C -0.120 4.120 12 C -0.120 4.120 13 C 0.041 3.959 14 C -0.515 4.515 15 H 0.069 0.931 16 C -0.002 4.002 17 N -0.937 5.937 18 Si 0.955 3.045 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.261 1.261 22 H 0.080 0.920 23 H 0.090 0.910 24 H 0.063 0.937 25 H 0.165 0.835 26 H 0.172 0.828 27 H 0.139 0.861 28 H 0.406 0.594 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.052 0.948 36 H 0.063 0.937 37 H -0.011 1.011 38 H -0.011 1.011 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.995 18.661 -0.093 19.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.145 4.145 3 C -0.139 4.139 4 C -0.141 4.141 5 N -0.189 5.189 6 C -0.164 4.164 7 C 0.055 3.945 8 N -0.354 5.354 9 C 0.018 3.982 10 C -0.064 4.064 11 C -0.177 4.177 12 C -0.178 4.178 13 C 0.003 3.997 14 C -0.553 4.553 15 H 0.087 0.913 16 C -0.199 4.199 17 N -0.578 5.578 18 Si 0.781 3.219 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.185 1.185 22 H 0.098 0.902 23 H 0.109 0.891 24 H 0.082 0.918 25 H 0.183 0.817 26 H 0.189 0.811 27 H 0.157 0.843 28 H 0.245 0.755 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.007 0.993 38 H 0.007 0.993 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.863 18.334 -0.085 19.249 hybrid contribution -0.962 -1.446 -0.002 1.737 sum -6.824 16.888 -0.087 18.215 Atomic orbital electron populations 1.20679 0.88504 1.03762 1.03235 1.20198 0.97952 0.91183 1.05191 1.22135 0.94885 0.98790 0.98100 1.22888 0.92800 0.95947 1.02513 1.67416 1.41940 0.98940 1.10563 1.22271 0.90526 0.96507 1.07051 1.18912 0.92904 0.87196 0.95476 1.44742 1.08582 1.01509 1.80552 1.21295 0.94107 0.82798 1.00004 1.20662 0.95595 0.93545 0.96581 1.21668 0.99032 1.01007 0.96038 1.21670 0.99036 1.01044 0.96007 1.18967 0.94436 0.91735 0.94562 1.21590 0.93746 0.91192 1.48799 0.91278 1.25896 0.96443 1.02134 0.95473 1.70104 1.13661 1.21473 1.52551 0.85589 0.79307 0.78815 0.78210 1.20193 1.21486 1.18537 0.90164 0.89092 0.91844 0.81725 0.81065 0.84311 0.75466 0.93241 0.93286 0.91833 0.92880 0.94302 0.94301 0.92850 0.91810 0.99281 0.99279 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.65 71.24 0.69 -0.89 16 2 C -0.13 -2.86 5.93 -19.55 -0.12 -2.98 16 3 C -0.12 -2.27 9.81 22.34 0.22 -2.05 16 4 C 0.02 0.41 11.18 84.69 0.95 1.36 16 5 N -0.48 -14.39 10.35 -195.28 -2.02 -16.41 16 6 C 0.00 -0.05 10.49 84.87 0.89 0.84 16 7 C 0.16 4.41 6.66 38.30 0.26 4.66 16 8 N -0.72 -19.37 5.06 -339.05 -1.71 -21.09 16 9 C 0.14 4.67 3.82 86.38 0.33 5.00 16 10 C -0.06 -2.33 0.54 -52.18 -0.03 -2.36 16 11 C -0.12 -4.04 8.05 71.98 0.58 -3.47 16 12 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 13 C 0.04 2.01 4.04 29.85 0.12 2.13 16 14 C -0.52 -27.34 7.65 25.60 0.20 -27.15 16 15 H 0.07 3.47 5.68 -2.91 -0.02 3.45 16 16 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 17 N -0.94 -56.26 13.29 21.45 0.28 -55.98 16 18 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 22 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.09 0.99 8.10 -2.39 -0.02 0.97 16 24 H 0.06 0.97 6.65 -2.38 -0.02 0.95 16 25 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 26 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 27 H 0.14 4.41 6.76 -2.91 -0.02 4.39 16 28 H 0.41 9.50 4.30 -92.71 -0.40 9.10 16 29 H 0.05 1.71 7.96 -2.38 -0.02 1.69 16 30 H 0.05 1.69 7.98 -2.39 -0.02 1.67 16 31 H 0.06 1.68 6.86 -2.39 -0.02 1.67 16 32 H 0.05 1.93 6.62 -2.39 -0.02 1.92 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.05 1.93 6.62 -2.39 -0.02 1.92 16 36 H 0.06 1.69 6.86 -2.39 -0.02 1.67 16 37 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 38 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -64.28 310.40 4.33 -59.95 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.63 Total: 16.23 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 5.12 Total: -28.03 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -3.45 Total: -93.48 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -64.28 4.33 -59.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229695730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.091 kcal (2) G-P(sol) polarization free energy of solvation -64.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds