Wall clock time and date at job start Mon Mar 30 2020 06:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47421 * 2 1 4 4 H 1.09010 * 109.47089 * 54.74871 * 3 2 1 5 5 C 1.50697 * 109.47320 * 174.74802 * 3 2 1 6 6 H 1.07996 * 120.00416 * 120.00120 * 5 3 2 7 7 C 1.37883 * 120.00059 * 300.00085 * 5 3 2 8 8 N 1.31511 * 120.00286 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99911 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47152 * 89.99822 * 9 7 5 11 11 H 1.48490 * 109.47289 * 209.99908 * 9 7 5 12 12 H 1.48499 * 109.47204 * 329.99945 * 9 7 5 13 13 N 1.46499 * 109.47502 * 294.75048 * 3 2 1 14 14 C 1.40010 * 120.00315 * 157.73880 * 13 3 2 15 15 C 1.38660 * 120.09760 * 355.20053 * 14 13 3 16 16 C 1.38268 * 120.00201 * 180.27707 * 15 14 13 17 17 C 1.38259 * 120.19416 * 359.97438 * 16 15 14 18 18 C 1.38268 * 120.19018 * 0.02562 * 17 16 15 19 19 C 1.38669 * 119.99795 * 359.97438 * 18 17 16 20 20 N 1.40016 * 120.09391 * 179.97438 * 19 18 17 21 21 C 1.46907 * 111.00068 * 300.02232 * 20 19 18 22 22 C 1.46898 * 111.00216 * 63.97527 * 20 19 18 23 23 H 1.08993 * 109.47355 * 175.44370 * 1 2 3 24 24 H 1.09005 * 109.47069 * 295.45157 * 1 2 3 25 25 H 1.09001 * 109.46874 * 55.44161 * 1 2 3 26 26 H 1.08994 * 109.46953 * 239.99654 * 2 1 3 27 27 H 1.08999 * 109.46721 * 120.00291 * 2 1 3 28 28 H 0.96998 * 120.00502 * 180.02562 * 8 7 5 29 29 H 0.97008 * 119.99630 * 337.74297 * 13 3 2 30 30 H 1.07998 * 120.00332 * 0.25139 * 15 14 13 31 31 H 1.08002 * 119.90812 * 179.97438 * 16 15 14 32 32 H 1.07989 * 119.90611 * 180.02562 * 17 16 15 33 33 H 1.08001 * 120.00105 * 180.02562 * 18 17 16 34 34 H 1.08998 * 109.47243 * 59.99888 * 21 20 19 35 35 H 1.09002 * 109.46919 * 180.02562 * 21 20 19 36 36 H 1.09005 * 109.46822 * 300.00184 * 21 20 19 37 37 H 1.08994 * 109.47379 * 60.00313 * 22 20 19 38 38 H 1.09000 * 109.47364 * 179.97438 * 22 20 19 39 39 H 1.09006 * 109.47481 * 299.99752 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6020 1.9828 0.8393 5 6 3.5414 1.4444 0.1301 6 1 4.1500 1.8878 -0.6441 7 6 4.1382 0.8801 1.2375 8 7 5.4485 0.8813 1.3508 9 14 3.0857 0.1137 2.5771 10 1 2.8650 -1.3228 2.2721 11 1 3.7780 0.2415 3.8845 12 1 1.7772 0.8132 2.6394 13 7 1.6577 2.0957 -1.2543 14 6 1.5821 3.4921 -1.3217 15 6 1.7710 4.2547 -0.1791 16 6 1.6902 5.6333 -0.2468 17 6 1.4218 6.2558 -1.4518 18 6 1.2320 5.5032 -2.5961 19 6 1.3113 4.1200 -2.5373 20 7 1.1190 3.3559 -3.6947 21 6 -0.2168 3.5858 -4.2614 22 6 2.1664 3.6310 -4.6872 23 1 -0.3634 -1.0243 -0.0816 24 1 -0.3633 0.4417 0.9280 25 1 -0.3633 0.5829 -0.8463 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 5.8684 0.4840 2.1297 29 1 1.4569 1.5607 -2.0382 30 1 1.9809 3.7718 0.7639 31 1 1.8372 6.2257 0.6442 32 1 1.3601 7.3329 -1.4994 33 1 1.0229 5.9926 -3.5358 34 1 -0.3269 4.6399 -4.5162 35 1 -0.3398 2.9799 -5.1591 36 1 -0.9749 3.3080 -3.5291 37 1 3.1407 3.3860 -4.2647 38 1 1.9932 3.0241 -5.5759 39 1 2.1426 4.6868 -4.9576 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233873172.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:50 Heat of formation + Delta-G solvation = 39.969286 kcal Electronic energy + Delta-G solvation = -18660.588073 eV Core-core repulsion = 15989.329925 eV Total energy + Delta-G solvation = -2671.258149 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.46698 -36.61990 -35.65732 -32.59646 -31.82004 -29.40940 -28.36210 -27.36105 -26.74807 -24.11582 -22.81675 -21.68100 -20.53332 -19.58882 -17.16212 -16.70184 -15.87224 -15.45411 -14.74136 -14.62547 -14.12725 -13.90172 -13.61380 -13.11474 -13.00779 -12.67212 -12.39915 -12.07277 -11.94143 -11.90868 -11.84117 -11.48797 -11.28402 -11.07561 -10.80474 -10.56042 -10.43842 -10.04452 -9.75179 -9.45983 -8.87221 -8.61202 -8.23360 -8.16390 -6.42901 -6.12191 -4.12082 1.93384 2.31176 3.20405 3.31227 3.33840 4.20398 4.32658 4.43060 4.55297 5.15572 5.33827 5.43837 5.48744 5.62078 5.65402 5.66565 5.77527 5.82445 5.87456 5.96700 5.98803 6.10526 6.22600 6.33101 6.44322 6.49465 6.57329 6.62426 6.80387 6.88981 6.98487 7.09604 7.17438 7.24989 7.45100 7.59277 7.74434 8.25642 8.54417 8.82125 8.96926 9.48892 11.00899 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023163 B = 0.007529 C = 0.006851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.511392 B = 3718.059348 C = 4085.804542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.138 4.138 3 C 0.244 3.756 4 H 0.035 0.965 5 C -0.524 4.524 6 H 0.078 0.922 7 C 0.072 3.928 8 N -0.895 5.895 9 Si 0.880 3.120 10 H -0.277 1.277 11 H -0.295 1.295 12 H -0.264 1.264 13 N -0.708 5.708 14 C 0.269 3.731 15 C -0.185 4.185 16 C -0.075 4.075 17 C -0.196 4.196 18 C -0.102 4.102 19 C -0.021 4.021 20 N -0.498 5.498 21 C 0.032 3.968 22 C 0.032 3.968 23 H 0.042 0.958 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.264 0.736 29 H 0.397 0.603 30 H 0.131 0.869 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.024 0.976 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.557 5.104 -7.184 13.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.176 4.176 3 C 0.140 3.860 4 H 0.053 0.947 5 C -0.563 4.563 6 H 0.096 0.904 7 C -0.130 4.130 8 N -0.533 5.533 9 Si 0.710 3.290 10 H -0.204 1.204 11 H -0.222 1.222 12 H -0.189 1.189 13 N -0.331 5.331 14 C 0.159 3.841 15 C -0.208 4.208 16 C -0.094 4.094 17 C -0.218 4.218 18 C -0.123 4.123 19 C -0.120 4.120 20 N -0.218 5.218 21 C -0.116 4.116 22 C -0.115 4.115 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.232 0.768 30 H 0.148 0.852 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -10.305 4.386 -6.759 13.081 hybrid contribution -0.379 0.154 0.235 0.471 sum -10.684 4.540 -6.525 13.317 Atomic orbital electron populations 1.21839 0.97430 1.00243 1.01402 1.22167 0.93855 0.99758 1.01838 1.19123 0.95320 0.88430 0.83163 0.94695 1.21447 0.89607 1.38351 1.06880 0.90412 1.24949 0.94771 0.95618 0.97694 1.69888 1.08815 1.45033 1.29528 0.86979 0.80800 0.79880 0.81366 1.20442 1.22239 1.18912 1.44959 1.72071 1.01967 1.14075 1.17650 0.90300 0.84810 0.91363 1.20788 1.08337 0.93435 0.98269 1.20852 0.97272 0.94118 0.97133 1.20515 1.09600 0.98542 0.93101 1.21069 0.99959 0.93495 0.97775 1.18101 1.13661 0.90007 0.90239 1.59372 1.02483 1.55376 1.04588 1.22399 0.90554 0.99016 0.99608 1.22402 0.95709 0.98686 0.94728 0.93909 0.93528 0.92692 0.91775 0.92263 0.92562 0.76828 0.85159 0.86964 0.87593 0.87727 0.95716 0.91797 0.91577 0.91090 0.91811 0.95746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.85 37.16 0.37 -2.23 16 2 C -0.14 -2.85 4.95 -26.73 -0.13 -2.98 16 3 C 0.24 5.51 1.27 -69.09 -0.09 5.42 16 4 H 0.04 0.83 5.52 -51.92 -0.29 0.54 16 5 C -0.52 -14.28 9.30 -34.44 -0.32 -14.60 16 6 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 7 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 8 N -0.89 -26.92 13.96 55.43 0.77 -26.14 16 9 Si 0.88 21.10 24.41 -169.99 -4.15 16.95 16 10 H -0.28 -6.48 6.83 56.52 0.39 -6.10 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.26 -6.01 6.53 56.52 0.37 -5.64 16 13 N -0.71 -14.43 4.64 -53.11 -0.25 -14.68 16 14 C 0.27 5.34 6.62 -83.51 -0.55 4.79 16 15 C -0.19 -3.68 9.18 -39.41 -0.36 -4.04 16 16 C -0.07 -1.28 10.04 -39.56 -0.40 -1.68 16 17 C -0.20 -3.12 10.04 -39.56 -0.40 -3.51 16 18 C -0.10 -1.64 8.58 -39.41 -0.34 -1.98 16 19 C -0.02 -0.38 4.76 -83.50 -0.40 -0.77 16 20 N -0.50 -7.63 4.16 -186.64 -0.78 -8.41 16 21 C 0.03 0.40 9.35 60.07 0.56 0.96 16 22 C 0.03 0.44 9.39 60.06 0.56 1.01 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.89 7.62 -51.93 -0.40 0.50 16 26 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.06 1.30 3.22 -51.93 -0.17 1.14 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.40 7.67 7.85 -40.82 -0.32 7.35 16 30 H 0.13 2.78 6.21 -52.49 -0.33 2.45 16 31 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.10 1.47 7.02 -52.49 -0.37 1.10 16 34 H 0.02 0.29 7.13 -51.93 -0.37 -0.08 16 35 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 39 H 0.02 0.31 7.35 -51.93 -0.38 -0.07 16 LS Contribution 307.77 15.07 4.64 4.64 Total: -1.00 -29.03 307.77 -7.38 -36.41 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -6.03 Total: 8.91 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -1.59 Total: -17.69 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.25 Total: -49.23 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.15 Total: 16.95 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.03 -7.38 -36.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233873172.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.379 kcal (2) G-P(sol) polarization free energy of solvation -29.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds