Wall clock time and date at job start Mon Mar 30 2020 06:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47421 * 2 1 4 4 H 1.09010 * 109.47089 * 54.74871 * 3 2 1 5 5 C 1.50697 * 109.47320 * 174.74802 * 3 2 1 6 6 H 1.07996 * 120.00416 * 120.00120 * 5 3 2 7 7 C 1.37883 * 120.00059 * 300.00085 * 5 3 2 8 8 N 1.31511 * 120.00286 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99911 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47152 * 89.99822 * 9 7 5 11 11 H 1.48490 * 109.47289 * 209.99908 * 9 7 5 12 12 H 1.48499 * 109.47204 * 329.99945 * 9 7 5 13 13 N 1.46499 * 109.47502 * 294.75048 * 3 2 1 14 14 C 1.40010 * 120.00315 * 157.73880 * 13 3 2 15 15 C 1.38660 * 120.09760 * 355.20053 * 14 13 3 16 16 C 1.38268 * 120.00201 * 180.27707 * 15 14 13 17 17 C 1.38259 * 120.19416 * 359.97438 * 16 15 14 18 18 C 1.38268 * 120.19018 * 0.02562 * 17 16 15 19 19 C 1.38669 * 119.99795 * 359.97438 * 18 17 16 20 20 N 1.40016 * 120.09391 * 179.97438 * 19 18 17 21 21 C 1.46907 * 111.00068 * 300.02232 * 20 19 18 22 22 C 1.46898 * 111.00216 * 63.97527 * 20 19 18 23 23 H 1.08993 * 109.47355 * 175.44370 * 1 2 3 24 24 H 1.09005 * 109.47069 * 295.45157 * 1 2 3 25 25 H 1.09001 * 109.46874 * 55.44161 * 1 2 3 26 26 H 1.08994 * 109.46953 * 239.99654 * 2 1 3 27 27 H 1.08999 * 109.46721 * 120.00291 * 2 1 3 28 28 H 0.96998 * 120.00502 * 180.02562 * 8 7 5 29 29 H 0.97008 * 119.99630 * 337.74297 * 13 3 2 30 30 H 1.07998 * 120.00332 * 0.25139 * 15 14 13 31 31 H 1.08002 * 119.90812 * 179.97438 * 16 15 14 32 32 H 1.07989 * 119.90611 * 180.02562 * 17 16 15 33 33 H 1.08001 * 120.00105 * 180.02562 * 18 17 16 34 34 H 1.08998 * 109.47243 * 59.99888 * 21 20 19 35 35 H 1.09002 * 109.46919 * 180.02562 * 21 20 19 36 36 H 1.09005 * 109.46822 * 300.00184 * 21 20 19 37 37 H 1.08994 * 109.47379 * 60.00313 * 22 20 19 38 38 H 1.09000 * 109.47364 * 179.97438 * 22 20 19 39 39 H 1.09006 * 109.47481 * 299.99752 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6020 1.9828 0.8393 5 6 3.5414 1.4444 0.1301 6 1 4.1500 1.8878 -0.6441 7 6 4.1382 0.8801 1.2375 8 7 5.4485 0.8813 1.3508 9 14 3.0857 0.1137 2.5771 10 1 2.8650 -1.3228 2.2721 11 1 3.7780 0.2415 3.8845 12 1 1.7772 0.8132 2.6394 13 7 1.6577 2.0957 -1.2543 14 6 1.5821 3.4921 -1.3217 15 6 1.7710 4.2547 -0.1791 16 6 1.6902 5.6333 -0.2468 17 6 1.4218 6.2558 -1.4518 18 6 1.2320 5.5032 -2.5961 19 6 1.3113 4.1200 -2.5373 20 7 1.1190 3.3559 -3.6947 21 6 -0.2168 3.5858 -4.2614 22 6 2.1664 3.6310 -4.6872 23 1 -0.3634 -1.0243 -0.0816 24 1 -0.3633 0.4417 0.9280 25 1 -0.3633 0.5829 -0.8463 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 5.8684 0.4840 2.1297 29 1 1.4569 1.5607 -2.0382 30 1 1.9809 3.7718 0.7639 31 1 1.8372 6.2257 0.6442 32 1 1.3601 7.3329 -1.4994 33 1 1.0229 5.9926 -3.5358 34 1 -0.3269 4.6399 -4.5162 35 1 -0.3398 2.9799 -5.1591 36 1 -0.9749 3.3080 -3.5291 37 1 3.1407 3.3860 -4.2647 38 1 1.9932 3.0241 -5.5759 39 1 2.1426 4.6868 -4.9576 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233873172.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:49 Heat of formation + Delta-G solvation = 21.433193 kcal Electronic energy + Delta-G solvation = -18661.391859 eV Core-core repulsion = 15989.329925 eV Total energy + Delta-G solvation = -2672.061934 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.81464 -38.14911 -37.01144 -34.49580 -33.50722 -30.73603 -29.92526 -28.48112 -28.39636 -25.32255 -24.61563 -23.14165 -21.90223 -21.18789 -18.96299 -18.37972 -17.20438 -17.12091 -16.30542 -15.84129 -15.48387 -15.40639 -15.04666 -14.81853 -14.36676 -14.33085 -13.68261 -13.62079 -13.51302 -13.18084 -13.03307 -12.89780 -12.58277 -12.55829 -12.37782 -12.23000 -11.89323 -11.70397 -11.56322 -11.27782 -10.72302 -10.56894 -9.54721 -9.34255 -8.30829 -7.95255 -6.34485 0.56656 0.92373 1.28571 1.34996 1.44655 2.29237 2.87778 3.03163 3.04439 3.16539 4.12754 4.23947 4.29657 4.32229 4.34976 4.45659 4.47161 4.55563 4.64829 4.68783 4.83337 4.88157 4.94933 5.01223 5.03237 5.05017 5.09799 5.12587 5.27522 5.41718 5.53020 5.60400 5.65587 5.84840 6.07857 6.11655 6.16921 6.45127 6.69055 6.87971 7.25758 7.35075 8.86970 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023163 B = 0.007529 C = 0.006851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.511392 B = 3718.059348 C = 4085.804542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.255 3.745 4 H 0.028 0.972 5 C -0.521 4.521 6 H 0.024 0.976 7 C 0.014 3.986 8 N -0.948 5.948 9 Si 0.945 3.055 10 H -0.262 1.262 11 H -0.298 1.298 12 H -0.244 1.244 13 N -0.712 5.712 14 C 0.237 3.763 15 C -0.214 4.214 16 C -0.081 4.081 17 C -0.187 4.187 18 C -0.103 4.103 19 C -0.017 4.017 20 N -0.514 5.514 21 C 0.034 3.966 22 C 0.035 3.965 23 H 0.068 0.932 24 H 0.047 0.953 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.265 0.735 29 H 0.400 0.600 30 H 0.104 0.896 31 H 0.132 0.868 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.036 0.964 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.042 0.958 38 H 0.087 0.913 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.228 5.742 -8.144 16.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.175 4.175 3 C 0.149 3.851 4 H 0.046 0.954 5 C -0.560 4.560 6 H 0.043 0.957 7 C -0.184 4.184 8 N -0.588 5.588 9 Si 0.772 3.228 10 H -0.187 1.187 11 H -0.226 1.226 12 H -0.168 1.168 13 N -0.337 5.337 14 C 0.129 3.871 15 C -0.237 4.237 16 C -0.100 4.100 17 C -0.208 4.208 18 C -0.123 4.123 19 C -0.115 4.115 20 N -0.236 5.236 21 C -0.113 4.113 22 C -0.112 4.112 23 H 0.087 0.913 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.236 0.764 30 H 0.122 0.878 31 H 0.150 0.850 32 H 0.157 0.843 33 H 0.150 0.850 34 H 0.054 0.946 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.106 0.894 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -13.010 5.054 -7.755 15.967 hybrid contribution 0.505 0.115 0.383 0.644 sum -12.505 5.169 -7.372 15.409 Atomic orbital electron populations 1.21749 0.94200 1.02150 1.01846 1.22057 0.96686 0.97498 1.01249 1.18813 0.91916 0.90126 0.84229 0.95421 1.21669 0.92106 1.36968 1.05269 0.95737 1.25813 0.95883 0.96332 1.00346 1.70056 1.11038 1.47043 1.30679 0.85910 0.79605 0.79775 0.77550 1.18746 1.22628 1.16798 1.44689 1.73269 1.02413 1.13325 1.17966 0.91936 0.84587 0.92607 1.20787 1.10457 0.94944 0.97521 1.21118 0.96870 0.93126 0.98851 1.20922 1.07336 1.00259 0.92235 1.21411 0.98918 0.92911 0.99070 1.18284 1.12148 0.90857 0.90221 1.59340 1.04162 1.55551 1.04517 1.22437 0.88554 1.00200 1.00082 1.22385 0.93998 0.99968 0.94866 0.91256 0.93337 0.92013 0.91842 0.93372 0.92555 0.76448 0.87828 0.84974 0.84281 0.84954 0.94560 0.89681 0.92160 0.93852 0.89434 0.94463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 9.85 71.98 0.71 -3.79 16 2 C -0.14 -5.51 4.95 30.59 0.15 -5.36 16 3 C 0.25 11.73 1.27 44.24 0.06 11.78 16 4 H 0.03 1.34 5.52 -2.38 -0.01 1.32 16 5 C -0.52 -29.82 9.30 25.60 0.24 -29.58 16 6 H 0.02 1.61 8.06 -2.91 -0.02 1.59 16 7 C 0.01 0.80 5.45 84.66 0.46 1.26 16 8 N -0.95 -59.67 13.96 21.45 0.30 -59.37 16 9 Si 0.95 44.18 24.41 68.60 1.67 45.85 16 10 H -0.26 -11.50 6.83 99.48 0.68 -10.82 16 11 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 12 H -0.24 -10.52 6.53 99.48 0.65 -9.87 16 13 N -0.71 -29.60 4.64 -321.96 -1.50 -31.09 16 14 C 0.24 9.54 6.62 38.23 0.25 9.80 16 15 C -0.21 -8.70 9.18 22.38 0.21 -8.50 16 16 C -0.08 -2.71 10.04 22.28 0.22 -2.48 16 17 C -0.19 -5.42 10.04 22.28 0.22 -5.20 16 18 C -0.10 -3.01 8.58 22.38 0.19 -2.82 16 19 C -0.02 -0.56 4.76 38.23 0.18 -0.38 16 20 N -0.51 -14.89 4.16 -744.39 -3.10 -17.99 16 21 C 0.03 0.75 9.35 127.69 1.19 1.94 16 22 C 0.03 0.90 9.39 127.69 1.20 2.10 16 23 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.06 1.87 7.62 -2.39 -0.02 1.85 16 26 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.05 2.04 3.22 -2.39 -0.01 2.03 16 28 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 29 H 0.40 15.61 7.85 -92.70 -0.73 14.88 16 30 H 0.10 4.67 6.21 -2.91 -0.02 4.65 16 31 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 32 H 0.14 3.13 8.06 -2.92 -0.02 3.11 16 33 H 0.13 3.15 7.02 -2.91 -0.02 3.13 16 34 H 0.04 0.72 7.13 -2.39 -0.02 0.70 16 35 H 0.08 1.52 8.12 -2.39 -0.02 1.50 16 36 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.82 8.12 -2.39 -0.02 1.80 16 39 H 0.04 0.85 7.35 -2.38 -0.02 0.84 16 Total: -1.00 -66.21 307.77 2.89 -63.33 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: 0.22 Total: 30.51 kcal Atomic # 6 Polarization: -36.52 SS G_CDS: 5.29 Total: -31.24 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -4.30 Total: -108.46 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.67 Total: 45.85 kcal Total: -66.21 2.89 -63.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233873172.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.760 kcal (2) G-P(sol) polarization free energy of solvation -66.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds