Wall clock time and date at job start Mon Mar 30 2020 06:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 N 1.46900 * 109.47303 * 64.99966 * 3 2 1 6 6 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 7 7 C 1.38287 * 119.92265 * 279.72502 * 6 3 2 8 8 C 1.38110 * 120.07112 * 179.72324 * 7 6 3 9 9 C 1.38909 * 119.92321 * 0.55038 * 8 7 6 10 10 N 1.39671 * 120.07484 * 179.74686 * 9 8 7 11 11 C 1.46497 * 120.00155 * 179.97438 * 10 9 8 12 12 C 1.46509 * 119.99853 * 359.97417 * 10 9 8 13 13 C 1.50705 * 109.46804 * 90.00003 * 12 10 9 14 14 H 1.08004 * 120.00113 * 0.02562 * 13 12 10 15 15 C 1.37874 * 119.99924 * 179.97438 * 13 12 10 16 16 N 1.31512 * 119.99872 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00047 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47249 * 90.00197 * 17 15 13 19 19 H 1.48506 * 109.47034 * 209.99728 * 17 15 13 20 20 H 1.48501 * 109.47198 * 329.99918 * 17 15 13 21 21 C 1.38913 * 119.85346 * 359.72269 * 9 8 7 22 22 C 1.38104 * 119.92565 * 0.02562 * 21 9 8 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 1.00900 * 110.99557 * 296.04557 * 5 3 2 29 29 H 1.00896 * 111.00091 * 59.99919 * 5 3 2 30 30 H 1.07994 * 119.96549 * 359.97438 * 7 6 3 31 31 H 1.07995 * 120.03542 * 180.26859 * 8 7 6 32 32 H 1.08996 * 109.47461 * 90.00075 * 11 10 9 33 33 H 1.09002 * 109.46960 * 210.00000 * 11 10 9 34 34 H 1.08994 * 109.47561 * 329.99684 * 11 10 9 35 35 H 1.09003 * 109.46991 * 209.99890 * 12 10 9 36 36 H 1.08996 * 109.46869 * 330.00314 * 12 10 9 37 37 H 0.97004 * 120.00101 * 180.02562 * 16 15 13 38 38 H 1.07996 * 120.03707 * 179.97438 * 21 9 8 39 39 H 1.07995 * 119.96744 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6514 2.0994 1.2552 6 6 3.5419 1.4444 -0.1238 7 6 4.3262 1.2085 0.9904 8 6 5.7028 1.2038 0.8793 9 6 6.2996 1.4477 -0.3511 10 7 7.6915 1.4489 -0.4660 11 6 8.3192 1.7057 -1.7646 12 6 8.5240 1.1933 0.7122 13 6 8.7870 -0.2859 0.8301 14 1 8.3756 -0.9674 0.1002 15 6 9.5537 -0.7691 1.8692 16 7 10.0550 0.0608 2.7577 17 14 9.8803 -2.6025 2.0149 18 1 11.1185 -2.9455 1.2703 19 1 10.0472 -2.9633 3.4458 20 1 8.7349 -3.3562 1.4447 21 6 5.5088 1.6898 -1.4672 22 6 4.1327 1.6879 -1.3502 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 0.6476 2.1685 1.3314 29 1 2.0422 1.6181 2.0512 30 1 3.8617 1.0238 1.9477 31 1 6.3147 1.0152 1.7490 32 1 8.4910 2.7758 -1.8798 33 1 9.2708 1.1769 -1.8191 34 1 7.6628 1.3553 -2.5610 35 1 9.4708 1.7237 0.6101 36 1 8.0063 1.5426 1.6055 37 1 10.5947 -0.2791 3.4885 38 1 5.9696 1.8802 -2.4252 39 1 3.5173 1.8757 -2.2175 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233887854.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:00 Heat of formation + Delta-G solvation = 20.060368 kcal Electronic energy + Delta-G solvation = -17866.342761 eV Core-core repulsion = 15194.221297 eV Total energy + Delta-G solvation = -2672.121464 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.18923 -37.02561 -34.82787 -32.65641 -30.91681 -30.38666 -29.23653 -27.75120 -25.83062 -24.24938 -22.57018 -21.80018 -20.68014 -19.34778 -16.90545 -16.50042 -15.82846 -15.08608 -14.78033 -14.42544 -14.32040 -14.17232 -13.68591 -13.53866 -12.94371 -12.75064 -12.41272 -12.26580 -12.07581 -11.76649 -11.48111 -11.32480 -11.24099 -10.96399 -10.87070 -10.67634 -10.51855 -10.25245 -9.85871 -9.73528 -8.85468 -8.52274 -8.50224 -8.23257 -6.43099 -6.00044 -4.16956 2.14474 2.29303 3.25768 3.32635 3.37130 4.17626 4.41500 4.49272 4.79292 4.96284 5.02926 5.08818 5.21915 5.42359 5.55277 5.59575 5.67629 5.70840 5.84947 5.89700 6.03377 6.04680 6.10650 6.20105 6.30413 6.43920 6.47303 6.66379 6.97621 7.03986 7.19064 7.23497 7.31888 7.40700 7.54635 7.64096 7.81558 8.16632 8.29394 8.52064 8.92290 9.49821 10.96085 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023261 B = 0.005436 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.417162 B = 5149.367373 C = 5759.866127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.156 4.156 3 C 0.146 3.854 4 H 0.077 0.923 5 N -0.841 5.841 6 C -0.160 4.160 7 C -0.060 4.060 8 C -0.186 4.186 9 C 0.238 3.762 10 N -0.617 5.617 11 C 0.099 3.901 12 C 0.249 3.751 13 C -0.531 4.531 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.220 4.220 22 C -0.069 4.069 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.334 0.666 29 H 0.339 0.661 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.035 0.965 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.030 0.970 36 H 0.036 0.964 37 H 0.264 0.736 38 H 0.113 0.887 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.050 2.004 -5.867 15.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.196 4.196 3 C 0.035 3.965 4 H 0.096 0.904 5 N -0.371 5.371 6 C -0.162 4.162 7 C -0.079 4.079 8 C -0.208 4.208 9 C 0.131 3.869 10 N -0.323 5.323 11 C -0.045 4.045 12 C 0.129 3.871 13 C -0.570 4.570 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.243 4.243 22 C -0.088 4.088 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.147 0.853 29 H 0.153 0.847 30 H 0.125 0.875 31 H 0.148 0.852 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.131 0.869 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.277 2.659 -5.987 14.805 hybrid contribution -0.086 -2.038 0.364 2.072 sum -13.363 0.621 -5.623 14.511 Atomic orbital electron populations 1.21816 0.96270 1.01552 1.01440 1.22387 0.95288 0.98991 1.02936 1.20134 0.92320 0.91387 0.92681 0.90445 1.58971 1.15269 1.58567 1.04245 1.19164 0.93427 1.09607 0.94051 1.20479 0.92878 0.97549 0.97010 1.20862 0.94517 1.08053 0.97405 1.17937 0.84025 0.91523 0.93404 1.47071 1.02071 1.73343 1.09766 1.21460 0.98350 0.99071 0.85650 1.19279 0.89515 0.95978 0.82312 1.21587 1.31770 0.92788 1.10831 0.92296 1.24957 0.95552 0.98082 0.95458 1.69932 1.34589 1.34505 1.14371 0.86530 0.78644 0.85225 0.77273 1.20621 1.21081 1.19849 1.20522 0.93463 1.12832 0.97452 1.20460 0.93803 0.98490 0.96093 0.92824 0.92709 0.93094 0.91956 0.91365 0.85325 0.84717 0.87518 0.85151 0.94658 0.91512 0.92732 0.95237 0.94620 0.92656 0.86921 0.87496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.68 37.16 0.36 -1.00 16 2 C -0.16 -1.75 5.56 -26.73 -0.15 -1.90 16 3 C 0.15 1.83 3.04 -68.86 -0.21 1.62 16 4 H 0.08 0.94 8.00 -51.93 -0.42 0.52 16 5 N -0.84 -9.79 9.00 -5.65 -0.05 -9.84 16 6 C -0.16 -2.53 4.96 -104.58 -0.52 -3.05 16 7 C -0.06 -1.05 9.29 -39.61 -0.37 -1.42 16 8 C -0.19 -3.84 9.21 -39.38 -0.36 -4.21 16 9 C 0.24 4.93 6.55 -83.79 -0.55 4.38 16 10 N -0.62 -13.44 2.99 -181.00 -0.54 -13.98 16 11 C 0.10 1.77 10.19 59.85 0.61 2.38 16 12 C 0.25 6.32 4.91 -5.19 -0.03 6.29 16 13 C -0.53 -14.58 9.39 -34.44 -0.32 -14.90 16 14 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.90 -25.75 13.29 55.43 0.74 -25.01 16 17 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 21 C -0.22 -3.92 9.21 -39.38 -0.36 -4.28 16 22 C -0.07 -1.11 9.66 -39.61 -0.38 -1.49 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.40 6.87 -51.93 -0.36 0.05 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.33 3.14 7.55 -39.29 -0.30 2.84 16 29 H 0.34 3.85 7.33 -39.29 -0.29 3.57 16 30 H 0.11 1.66 6.64 -52.49 -0.35 1.31 16 31 H 0.13 2.96 6.14 -52.49 -0.32 2.64 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 34 H 0.05 0.86 6.20 -51.93 -0.32 0.54 16 35 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 36 H 0.04 0.96 6.20 -51.93 -0.32 0.64 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.11 1.81 6.14 -52.49 -0.32 1.49 16 39 H 0.11 1.43 8.03 -52.49 -0.42 1.01 16 LS Contribution 315.32 15.07 4.75 4.75 Total: -1.00 -29.15 315.32 -8.42 -37.57 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.91 Total: 6.16 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -2.38 Total: -15.97 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.14 Total: -48.83 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.15 -8.42 -37.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233887854.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.630 kcal (2) G-P(sol) polarization free energy of solvation -29.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds