Wall clock time and date at job start Mon Mar 30 2020 06:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 N 1.46900 * 109.47303 * 64.99966 * 3 2 1 6 6 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 7 7 C 1.38287 * 119.92265 * 279.72502 * 6 3 2 8 8 C 1.38110 * 120.07112 * 179.72324 * 7 6 3 9 9 C 1.38909 * 119.92321 * 0.55038 * 8 7 6 10 10 N 1.39671 * 120.07484 * 179.74686 * 9 8 7 11 11 C 1.46497 * 120.00155 * 179.97438 * 10 9 8 12 12 C 1.46509 * 119.99853 * 359.97417 * 10 9 8 13 13 C 1.50705 * 109.46804 * 90.00003 * 12 10 9 14 14 H 1.08004 * 120.00113 * 0.02562 * 13 12 10 15 15 C 1.37874 * 119.99924 * 179.97438 * 13 12 10 16 16 N 1.31512 * 119.99872 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00047 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47249 * 90.00197 * 17 15 13 19 19 H 1.48506 * 109.47034 * 209.99728 * 17 15 13 20 20 H 1.48501 * 109.47198 * 329.99918 * 17 15 13 21 21 C 1.38913 * 119.85346 * 359.72269 * 9 8 7 22 22 C 1.38104 * 119.92565 * 0.02562 * 21 9 8 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 1.00900 * 110.99557 * 296.04557 * 5 3 2 29 29 H 1.00896 * 111.00091 * 59.99919 * 5 3 2 30 30 H 1.07994 * 119.96549 * 359.97438 * 7 6 3 31 31 H 1.07995 * 120.03542 * 180.26859 * 8 7 6 32 32 H 1.08996 * 109.47461 * 90.00075 * 11 10 9 33 33 H 1.09002 * 109.46960 * 210.00000 * 11 10 9 34 34 H 1.08994 * 109.47561 * 329.99684 * 11 10 9 35 35 H 1.09003 * 109.46991 * 209.99890 * 12 10 9 36 36 H 1.08996 * 109.46869 * 330.00314 * 12 10 9 37 37 H 0.97004 * 120.00101 * 180.02562 * 16 15 13 38 38 H 1.07996 * 120.03707 * 179.97438 * 21 9 8 39 39 H 1.07995 * 119.96744 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6514 2.0994 1.2552 6 6 3.5419 1.4444 -0.1238 7 6 4.3262 1.2085 0.9904 8 6 5.7028 1.2038 0.8793 9 6 6.2996 1.4477 -0.3511 10 7 7.6915 1.4489 -0.4660 11 6 8.3192 1.7057 -1.7646 12 6 8.5240 1.1933 0.7122 13 6 8.7870 -0.2859 0.8301 14 1 8.3756 -0.9674 0.1002 15 6 9.5537 -0.7691 1.8692 16 7 10.0550 0.0608 2.7577 17 14 9.8803 -2.6025 2.0149 18 1 11.1185 -2.9455 1.2703 19 1 10.0472 -2.9633 3.4458 20 1 8.7349 -3.3562 1.4447 21 6 5.5088 1.6898 -1.4672 22 6 4.1327 1.6879 -1.3502 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 0.6476 2.1685 1.3314 29 1 2.0422 1.6181 2.0512 30 1 3.8617 1.0238 1.9477 31 1 6.3147 1.0152 1.7490 32 1 8.4910 2.7758 -1.8798 33 1 9.2708 1.1769 -1.8191 34 1 7.6628 1.3553 -2.5610 35 1 9.4708 1.7237 0.6101 36 1 8.0063 1.5426 1.6055 37 1 10.5947 -0.2791 3.4885 38 1 5.9696 1.8802 -2.4252 39 1 3.5173 1.8757 -2.2175 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233887854.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:59 Heat of formation + Delta-G solvation = 2.641513 kcal Electronic energy + Delta-G solvation = -17867.098099 eV Core-core repulsion = 15194.221297 eV Total energy + Delta-G solvation = -2672.876802 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.57318 -38.30823 -36.23871 -34.67273 -32.00855 -31.63325 -30.66014 -29.51701 -27.20383 -25.76125 -24.11234 -23.14528 -21.95462 -20.68140 -18.63920 -18.29298 -17.19741 -16.53881 -16.30280 -15.69796 -15.57407 -15.32289 -15.15950 -14.74837 -14.41516 -14.19161 -14.03149 -13.56724 -13.25000 -13.16047 -13.04208 -12.90245 -12.64454 -12.53747 -12.33303 -12.15922 -11.78619 -11.74446 -11.64054 -11.36346 -10.64725 -10.39081 -9.65770 -9.49199 -8.35780 -7.77841 -6.38001 0.71613 0.88351 1.36210 1.37180 1.48381 2.33969 2.64472 3.05713 3.11367 3.82076 3.98028 4.08064 4.21394 4.22886 4.28153 4.42733 4.58814 4.63711 4.70030 4.74551 4.83767 4.88207 4.93928 5.01210 5.10539 5.17320 5.18303 5.26509 5.34250 5.40445 5.59169 5.69311 5.70673 5.92703 6.06969 6.21670 6.35727 6.50457 6.71665 6.82750 6.94975 7.34003 8.83118 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023261 B = 0.005436 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.417162 B = 5149.367373 C = 5759.866127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.152 4.152 3 C 0.151 3.849 4 H 0.092 0.908 5 N -0.848 5.848 6 C -0.150 4.150 7 C -0.063 4.063 8 C -0.216 4.216 9 C 0.207 3.793 10 N -0.633 5.633 11 C 0.098 3.902 12 C 0.267 3.733 13 C -0.542 4.542 14 H 0.049 0.951 15 C 0.013 3.987 16 N -0.927 5.927 17 Si 0.962 3.038 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.273 1.273 21 C -0.215 4.215 22 C -0.067 4.067 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.349 0.651 29 H 0.340 0.660 30 H 0.120 0.880 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.009 0.991 36 H 0.010 0.990 37 H 0.267 0.733 38 H 0.134 0.866 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.364 1.519 -7.384 18.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.192 4.192 3 C 0.039 3.961 4 H 0.110 0.890 5 N -0.379 5.379 6 C -0.153 4.153 7 C -0.082 4.082 8 C -0.239 4.239 9 C 0.103 3.897 10 N -0.341 5.341 11 C -0.045 4.045 12 C 0.145 3.855 13 C -0.580 4.580 14 H 0.067 0.933 15 C -0.186 4.186 16 N -0.567 5.567 17 Si 0.787 3.213 18 H -0.195 1.195 19 H -0.204 1.204 20 H -0.197 1.197 21 C -0.238 4.238 22 C -0.086 4.086 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.164 0.836 29 H 0.153 0.847 30 H 0.138 0.862 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.027 0.973 36 H 0.028 0.972 37 H 0.076 0.924 38 H 0.151 0.849 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.631 2.186 -7.526 17.486 hybrid contribution 0.500 -1.829 0.828 2.069 sum -15.131 0.357 -6.697 16.551 Atomic orbital electron populations 1.21777 0.94165 1.02234 1.02422 1.22316 0.97091 0.97694 1.02107 1.20125 0.89768 0.92551 0.93630 0.89020 1.58927 1.16617 1.58482 1.03907 1.19624 0.95456 1.06927 0.93301 1.20650 0.91715 0.97225 0.98614 1.20775 0.95772 1.10662 0.96679 1.18225 0.83731 0.93321 0.94456 1.46940 1.02499 1.74895 1.09778 1.21592 0.98207 1.00092 0.84568 1.18765 0.88768 0.94671 0.83309 1.21772 1.31790 0.93688 1.10777 0.93314 1.25783 0.95212 1.02648 0.94988 1.70041 1.35174 1.36533 1.14915 0.85490 0.78639 0.79615 0.77535 1.19516 1.20353 1.19748 1.20790 0.94145 1.11702 0.97167 1.20919 0.93411 0.96886 0.97395 0.92362 0.91738 0.92103 0.93061 0.92018 0.83585 0.84677 0.86173 0.88803 0.93034 0.92525 0.90309 0.97344 0.97250 0.92373 0.84875 0.83773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.68 71.98 0.70 -1.44 16 2 C -0.15 -3.01 5.56 30.60 0.17 -2.84 16 3 C 0.15 3.31 3.04 44.17 0.13 3.44 16 4 H 0.09 1.82 8.00 -2.39 -0.02 1.80 16 5 N -0.85 -17.52 9.00 -171.79 -1.55 -19.06 16 6 C -0.15 -4.45 4.96 -19.84 -0.10 -4.55 16 7 C -0.06 -2.21 9.29 22.25 0.21 -2.00 16 8 C -0.22 -9.35 9.21 22.40 0.21 -9.14 16 9 C 0.21 8.73 6.55 38.21 0.25 8.98 16 10 N -0.63 -28.49 2.99 -726.55 -2.17 -30.66 16 11 C 0.10 3.50 10.19 127.77 1.30 4.80 16 12 C 0.27 14.34 4.91 85.63 0.42 14.76 16 13 C -0.54 -30.92 9.39 25.60 0.24 -30.68 16 14 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 15 C 0.01 0.73 5.46 84.65 0.46 1.19 16 16 N -0.93 -55.01 13.29 21.45 0.28 -54.72 16 17 Si 0.96 44.45 29.54 68.60 2.03 46.47 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 21 C -0.22 -7.32 9.21 22.40 0.21 -7.11 16 22 C -0.07 -1.96 9.66 22.25 0.21 -1.74 16 23 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.06 0.76 6.87 -2.38 -0.02 0.74 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.35 5.45 7.55 -89.69 -0.68 4.78 16 29 H 0.34 7.08 7.33 -89.70 -0.66 6.42 16 30 H 0.12 3.74 6.64 -2.91 -0.02 3.73 16 31 H 0.09 4.67 6.14 -2.91 -0.02 4.65 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 2.09 8.07 -2.39 -0.02 2.07 16 34 H 0.08 2.37 6.20 -2.39 -0.01 2.36 16 35 H 0.01 0.48 8.07 -2.39 -0.02 0.46 16 36 H 0.01 0.55 6.20 -2.39 -0.01 0.54 16 37 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 38 H 0.13 3.90 6.14 -2.91 -0.02 3.88 16 39 H 0.14 3.15 8.03 -2.91 -0.02 3.13 16 Total: -1.00 -64.70 315.32 2.72 -61.99 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -0.29 Total: 22.31 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 4.41 Total: -26.32 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -3.43 Total: -104.45 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -64.70 2.72 -61.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233887854.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.628 kcal (2) G-P(sol) polarization free energy of solvation -64.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds