Wall clock time and date at job start Mon Mar 30 2020 06:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46894 * 60.00253 * 9 7 5 11 11 H 1.48500 * 109.47102 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47542 * 300.00050 * 9 7 5 13 13 N 1.46497 * 109.47195 * 64.99866 * 3 2 1 14 14 C 1.40018 * 120.00466 * 275.00565 * 13 3 2 15 15 C 1.38658 * 120.09293 * 359.71480 * 14 13 3 16 16 C 1.38271 * 119.99803 * 179.74931 * 15 14 13 17 17 C 1.38256 * 120.19279 * 0.55804 * 16 15 14 18 18 C 1.38273 * 120.19049 * 359.69557 * 17 16 15 19 19 C 1.38661 * 120.00141 * 0.03003 * 18 17 16 20 20 N 1.40007 * 120.09868 * 180.02562 * 19 18 17 21 21 C 1.46906 * 110.99885 * 299.97493 * 20 19 18 22 22 C 1.46897 * 111.00315 * 63.92539 * 20 19 18 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 28 28 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 29 29 H 0.97010 * 119.99804 * 95.00047 * 13 3 2 30 30 H 1.07994 * 120.00221 * 0.02818 * 15 14 13 31 31 H 1.08004 * 119.90556 * 180.30435 * 16 15 14 32 32 H 1.07997 * 119.90797 * 179.72656 * 17 16 15 33 33 H 1.08003 * 119.99635 * 180.02562 * 18 17 16 34 34 H 1.09000 * 109.47412 * 59.99895 * 21 20 19 35 35 H 1.08998 * 109.47014 * 180.02562 * 21 20 19 36 36 H 1.08997 * 109.46837 * 299.99838 * 21 20 19 37 37 H 1.09003 * 109.47120 * 60.00193 * 22 20 19 38 38 H 1.09003 * 109.47481 * 179.97438 * 22 20 19 39 39 H 1.09003 * 109.47557 * 300.00201 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5975 0.1475 -0.2351 11 1 6.3977 0.2169 -2.6505 12 1 6.4994 2.2817 -1.3823 13 7 1.6524 2.0975 1.2518 14 6 0.3877 2.6863 1.3715 15 6 -0.4972 2.6559 0.3045 16 6 -1.7476 3.2335 0.4266 17 6 -2.1152 3.8525 1.6069 18 6 -1.2370 3.8921 2.6742 19 6 0.0167 3.3105 2.5624 20 7 0.9074 3.3489 3.6420 21 6 1.2199 4.7343 4.0175 22 6 0.3772 2.5995 4.7888 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.8292 -0.0602 -2.9503 29 1 2.2720 2.1231 1.9978 30 1 -0.2116 2.1771 -0.6205 31 1 -2.4375 3.2046 -0.4038 32 1 -3.0913 4.3060 1.6957 33 1 -1.5276 4.3762 3.5949 34 1 0.3026 5.2493 4.3028 35 1 1.9139 4.7352 4.8581 36 1 1.6756 5.2464 3.1701 37 1 0.2203 1.5596 4.5021 38 1 1.0889 2.6452 5.6132 39 1 -0.5707 3.0371 5.1021 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234010779.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:52 Heat of formation + Delta-G solvation = 37.292876 kcal Electronic energy + Delta-G solvation = -18691.988205 eV Core-core repulsion = 16020.613998 eV Total energy + Delta-G solvation = -2671.374207 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.55643 -36.64157 -35.42994 -32.68379 -31.06271 -29.47756 -28.60482 -27.35262 -26.07457 -24.11292 -22.98630 -21.67783 -20.52541 -19.17008 -17.31106 -16.31039 -15.61053 -15.34147 -14.74456 -14.57137 -14.00065 -13.86117 -13.60301 -13.29267 -12.85475 -12.46715 -12.27120 -11.93875 -11.77715 -11.53845 -11.45737 -11.26617 -11.22987 -10.88617 -10.83045 -10.59502 -10.17971 -10.10384 -9.66342 -9.24148 -8.92730 -8.41317 -8.20975 -8.14324 -6.35603 -6.12342 -4.19992 1.90837 2.29770 3.26896 3.31502 3.34102 4.22143 4.30854 4.44260 4.72090 5.19086 5.34671 5.43132 5.49795 5.58434 5.64735 5.67183 5.86932 6.03129 6.05084 6.14249 6.25185 6.31496 6.35623 6.52184 6.55483 6.81256 6.96627 7.00199 7.01421 7.18712 7.19317 7.27240 7.42402 7.50209 7.68972 7.81318 7.92945 8.15356 8.50382 8.81359 9.04395 9.46969 10.92850 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.024003 B = 0.006983 C = 0.006027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.263224 B = 4008.551337 C = 4644.344758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.271 3.729 4 H 0.039 0.961 5 C -0.527 4.527 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.709 5.709 14 C 0.263 3.737 15 C -0.200 4.200 16 C -0.076 4.076 17 C -0.201 4.201 18 C -0.101 4.101 19 C -0.025 4.025 20 N -0.497 5.497 21 C 0.032 3.968 22 C 0.033 3.967 23 H 0.047 0.953 24 H 0.028 0.972 25 H 0.048 0.952 26 H 0.034 0.966 27 H 0.098 0.902 28 H 0.264 0.736 29 H 0.399 0.601 30 H 0.136 0.864 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.024 0.976 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.308 4.603 8.456 12.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.171 4.171 3 C 0.168 3.832 4 H 0.056 0.944 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.329 5.329 14 C 0.150 3.850 15 C -0.223 4.223 16 C -0.095 4.095 17 C -0.222 4.222 18 C -0.121 4.121 19 C -0.124 4.124 20 N -0.217 5.217 21 C -0.115 4.115 22 C -0.115 4.115 23 H 0.066 0.934 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.117 0.883 28 H 0.074 0.926 29 H 0.234 0.766 30 H 0.153 0.847 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -6.703 4.146 7.935 11.184 hybrid contribution 0.409 0.354 0.446 0.701 sum -6.294 4.500 8.381 11.407 Atomic orbital electron populations 1.22192 0.99035 0.99052 1.00531 1.22019 0.92154 1.00443 1.02487 1.18743 0.94433 0.88731 0.81244 0.94380 1.21204 0.90909 1.38420 1.06051 0.92156 1.24862 0.98546 0.94829 0.95416 1.69858 1.35178 1.38032 1.09420 0.86527 0.85021 0.78318 0.77377 1.20196 1.21173 1.20211 1.45589 1.12060 1.57499 1.17765 1.17842 0.86687 0.89181 0.91253 1.21047 0.94606 1.07063 0.99630 1.20817 0.95644 0.96206 0.96861 1.20484 0.99819 1.07297 0.94635 1.21079 0.93866 0.99105 0.98070 1.18104 0.92644 1.09081 0.92586 1.59348 1.43131 1.13557 1.05708 1.22393 0.99466 0.88499 1.01136 1.22394 0.97674 0.98873 0.92535 0.93436 0.95337 0.93304 0.94748 0.88347 0.92587 0.76647 0.84658 0.87088 0.87696 0.87809 0.95789 0.91778 0.91355 0.91446 0.91779 0.95813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.23 37.16 0.31 -2.75 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.57 2.20 -69.09 -0.15 6.42 16 4 H 0.04 1.01 6.48 -51.93 -0.34 0.68 16 5 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 6 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -24.25 11.29 55.43 0.63 -23.63 16 9 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.71 -15.19 5.17 -53.11 -0.27 -15.47 16 14 C 0.26 5.17 5.50 -83.50 -0.46 4.71 16 15 C -0.20 -3.79 6.74 -39.41 -0.27 -4.06 16 16 C -0.08 -1.25 10.04 -39.56 -0.40 -1.65 16 17 C -0.20 -3.10 10.04 -39.56 -0.40 -3.50 16 18 C -0.10 -1.59 8.58 -39.41 -0.34 -1.93 16 19 C -0.03 -0.44 4.76 -83.51 -0.40 -0.84 16 20 N -0.50 -7.81 4.16 -186.64 -0.78 -8.59 16 21 C 0.03 0.44 9.35 60.07 0.56 1.00 16 22 C 0.03 0.44 9.39 60.06 0.56 1.00 16 23 H 0.05 0.94 6.37 -51.93 -0.33 0.61 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.98 5.40 -51.93 -0.28 0.69 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.10 2.54 5.95 -51.93 -0.31 2.24 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.40 8.51 7.82 -40.82 -0.32 8.19 16 30 H 0.14 2.73 4.04 -52.49 -0.21 2.52 16 31 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 32 H 0.10 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.10 1.45 7.02 -52.48 -0.37 1.08 16 34 H 0.02 0.30 7.13 -51.93 -0.37 -0.07 16 35 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 39 H 0.02 0.29 7.35 -51.93 -0.38 -0.09 16 LS Contribution 304.29 15.07 4.59 4.59 Total: -1.00 -26.70 304.29 -8.21 -34.91 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -5.83 Total: 9.88 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -1.52 Total: -17.42 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.42 Total: -47.68 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -26.70 -8.21 -34.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234010779.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.202 kcal (2) G-P(sol) polarization free energy of solvation -26.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds