Wall clock time and date at job start Mon Mar 30 2020 06:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46894 * 60.00253 * 9 7 5 11 11 H 1.48500 * 109.47102 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47542 * 300.00050 * 9 7 5 13 13 N 1.46497 * 109.47195 * 64.99866 * 3 2 1 14 14 C 1.40018 * 120.00466 * 275.00565 * 13 3 2 15 15 C 1.38658 * 120.09293 * 359.71480 * 14 13 3 16 16 C 1.38271 * 119.99803 * 179.74931 * 15 14 13 17 17 C 1.38256 * 120.19279 * 0.55804 * 16 15 14 18 18 C 1.38273 * 120.19049 * 359.69557 * 17 16 15 19 19 C 1.38661 * 120.00141 * 0.03003 * 18 17 16 20 20 N 1.40007 * 120.09868 * 180.02562 * 19 18 17 21 21 C 1.46906 * 110.99885 * 299.97493 * 20 19 18 22 22 C 1.46897 * 111.00315 * 63.92539 * 20 19 18 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 28 28 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 29 29 H 0.97010 * 119.99804 * 95.00047 * 13 3 2 30 30 H 1.07994 * 120.00221 * 0.02818 * 15 14 13 31 31 H 1.08004 * 119.90556 * 180.30435 * 16 15 14 32 32 H 1.07997 * 119.90797 * 179.72656 * 17 16 15 33 33 H 1.08003 * 119.99635 * 180.02562 * 18 17 16 34 34 H 1.09000 * 109.47412 * 59.99895 * 21 20 19 35 35 H 1.08998 * 109.47014 * 180.02562 * 21 20 19 36 36 H 1.08997 * 109.46837 * 299.99838 * 21 20 19 37 37 H 1.09003 * 109.47120 * 60.00193 * 22 20 19 38 38 H 1.09003 * 109.47481 * 179.97438 * 22 20 19 39 39 H 1.09003 * 109.47557 * 300.00201 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5975 0.1475 -0.2351 11 1 6.3977 0.2169 -2.6505 12 1 6.4994 2.2817 -1.3823 13 7 1.6524 2.0975 1.2518 14 6 0.3877 2.6863 1.3715 15 6 -0.4972 2.6559 0.3045 16 6 -1.7476 3.2335 0.4266 17 6 -2.1152 3.8525 1.6069 18 6 -1.2370 3.8921 2.6742 19 6 0.0167 3.3105 2.5624 20 7 0.9074 3.3489 3.6420 21 6 1.2199 4.7343 4.0175 22 6 0.3772 2.5995 4.7888 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.8292 -0.0602 -2.9503 29 1 2.2720 2.1231 1.9978 30 1 -0.2116 2.1771 -0.6205 31 1 -2.4375 3.2046 -0.4038 32 1 -3.0913 4.3060 1.6957 33 1 -1.5276 4.3762 3.5949 34 1 0.3026 5.2493 4.3028 35 1 1.9139 4.7352 4.8581 36 1 1.6756 5.2464 3.1701 37 1 0.2203 1.5596 4.5021 38 1 1.0889 2.6452 5.6132 39 1 -0.5707 3.0371 5.1021 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234010779.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:52 Heat of formation + Delta-G solvation = 22.419380 kcal Electronic energy + Delta-G solvation = -18692.633168 eV Core-core repulsion = 16020.613998 eV Total energy + Delta-G solvation = -2672.019170 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.90425 -38.13346 -36.85523 -34.53762 -32.78997 -30.86626 -30.12234 -28.40028 -27.84991 -25.31536 -24.83455 -23.19410 -21.84325 -20.86455 -18.97069 -17.86360 -17.13982 -16.94976 -16.22008 -15.92404 -15.43371 -15.28477 -15.11665 -14.74227 -14.33042 -14.09294 -13.53364 -13.33965 -13.13457 -13.06119 -12.94322 -12.85848 -12.65720 -12.56043 -12.39728 -12.10808 -11.93643 -11.81374 -11.43314 -11.00387 -10.73567 -10.35780 -9.48972 -9.31374 -8.16757 -7.87378 -6.29995 0.58694 0.94796 1.42463 1.43268 1.51157 2.38875 3.00221 3.08999 3.13130 3.19466 4.14039 4.32143 4.33334 4.46922 4.50530 4.56695 4.60246 4.67387 4.67832 4.78095 4.87329 4.95367 5.01285 5.03224 5.07326 5.13974 5.30178 5.43303 5.53493 5.59277 5.65888 5.74043 5.86707 5.91788 6.11509 6.12264 6.20787 6.48587 6.67436 7.01176 7.34294 7.44454 8.88833 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.024003 B = 0.006983 C = 0.006027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.263224 B = 4008.551337 C = 4644.344758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.124 4.124 3 C 0.284 3.716 4 H 0.008 0.992 5 C -0.548 4.548 6 H 0.055 0.945 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.961 3.039 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.274 1.274 13 N -0.718 5.718 14 C 0.232 3.768 15 C -0.217 4.217 16 C -0.079 4.079 17 C -0.188 4.188 18 C -0.102 4.102 19 C -0.021 4.021 20 N -0.519 5.519 21 C 0.035 3.965 22 C 0.035 3.965 23 H 0.046 0.954 24 H 0.043 0.957 25 H 0.051 0.949 26 H 0.025 0.975 27 H 0.071 0.929 28 H 0.265 0.735 29 H 0.396 0.604 30 H 0.113 0.887 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.130 0.870 34 H 0.038 0.962 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.083 0.917 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.403 5.615 10.011 14.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.163 4.163 3 C 0.180 3.820 4 H 0.025 0.975 5 C -0.586 4.586 6 H 0.073 0.927 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.787 3.213 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.200 1.200 13 N -0.341 5.341 14 C 0.122 3.878 15 C -0.240 4.240 16 C -0.098 4.098 17 C -0.209 4.209 18 C -0.123 4.123 19 C -0.119 4.119 20 N -0.240 5.240 21 C -0.112 4.112 22 C -0.111 4.111 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.230 0.770 30 H 0.131 0.869 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.148 0.852 34 H 0.057 0.943 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.838 5.180 9.512 13.370 hybrid contribution 0.644 0.124 0.021 0.656 sum -7.194 5.305 9.533 13.068 Atomic orbital electron populations 1.22018 0.96567 1.00005 1.00661 1.21841 0.94326 0.99603 1.00533 1.18337 0.93096 0.88871 0.81681 0.97471 1.21536 0.92368 1.38535 1.06169 0.92680 1.25616 1.02719 0.94470 0.95106 1.69981 1.36725 1.38468 1.09738 0.85565 0.79990 0.78293 0.77490 1.19643 1.20642 1.19960 1.45222 1.13186 1.59178 1.16531 1.18127 0.86167 0.90697 0.92767 1.21014 0.95955 1.08247 0.98825 1.21099 0.94862 0.95564 0.98292 1.20905 1.00912 1.05463 0.93620 1.21387 0.93042 0.98537 0.99286 1.18282 0.93480 1.07873 0.92285 1.59309 1.43374 1.15084 1.06219 1.22397 1.00485 0.87208 1.01106 1.22396 0.98879 0.97747 0.92107 0.93484 0.93802 0.92981 0.95636 0.91050 0.92565 0.76984 0.86876 0.84768 0.84387 0.85218 0.94315 0.89845 0.93048 0.92937 0.89865 0.94421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.57 8.23 71.98 0.59 -4.97 16 2 C -0.12 -6.00 5.45 30.59 0.17 -5.84 16 3 C 0.28 14.39 2.20 44.24 0.10 14.49 16 4 H 0.01 0.42 6.48 -2.39 -0.02 0.41 16 5 C -0.55 -30.01 8.73 25.60 0.22 -29.78 16 6 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 7 C 0.02 1.15 5.29 84.65 0.45 1.59 16 8 N -0.91 -51.25 11.29 21.45 0.24 -51.01 16 9 Si 0.96 43.14 29.54 68.60 2.03 45.16 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 N -0.72 -31.82 5.17 -321.95 -1.66 -33.48 16 14 C 0.23 9.17 5.50 38.23 0.21 9.38 16 15 C -0.22 -8.27 6.74 22.38 0.15 -8.12 16 16 C -0.08 -2.45 10.04 22.28 0.22 -2.23 16 17 C -0.19 -5.14 10.04 22.28 0.22 -4.92 16 18 C -0.10 -2.90 8.58 22.38 0.19 -2.71 16 19 C -0.02 -0.69 4.76 38.23 0.18 -0.51 16 20 N -0.52 -15.51 4.16 -744.40 -3.10 -18.60 16 21 C 0.03 0.86 9.35 127.69 1.19 2.06 16 22 C 0.04 0.87 9.39 127.69 1.20 2.07 16 23 H 0.05 1.91 6.37 -2.39 -0.02 1.90 16 24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.05 2.10 5.40 -2.39 -0.01 2.08 16 26 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 3.85 5.95 -2.39 -0.01 3.83 16 28 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 29 H 0.40 17.47 7.82 -92.70 -0.73 16.75 16 30 H 0.11 4.77 4.04 -2.91 -0.01 4.76 16 31 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 33 H 0.13 3.03 7.02 -2.91 -0.02 3.01 16 34 H 0.04 0.83 7.13 -2.39 -0.02 0.82 16 35 H 0.08 1.72 8.12 -2.39 -0.02 1.70 16 36 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 1.70 8.12 -2.39 -0.02 1.68 16 39 H 0.04 0.81 7.35 -2.39 -0.02 0.79 16 Total: -1.00 -58.48 304.29 2.93 -55.56 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.31 Total: 31.87 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 5.10 Total: -29.49 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -4.52 Total: -103.10 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -58.48 2.93 -55.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234010779.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.978 kcal (2) G-P(sol) polarization free energy of solvation -58.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds