Wall clock time and date at job start Mon Mar 30 2020 06:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47139 * 2 1 4 4 H 1.09001 * 109.47396 * 54.99706 * 3 2 1 5 5 N 1.46905 * 109.47084 * 294.99736 * 3 2 1 6 6 C 1.50700 * 109.47064 * 174.99796 * 3 2 1 7 7 C 1.38287 * 119.92371 * 79.72875 * 6 3 2 8 8 C 1.38101 * 120.07272 * 179.72649 * 7 6 3 9 9 C 1.38911 * 119.92614 * 0.54336 * 8 7 6 10 10 N 1.39672 * 120.07594 * 179.74548 * 9 8 7 11 11 C 1.46502 * 119.99827 * 179.97438 * 10 9 8 12 12 C 1.46501 * 119.99988 * 359.97438 * 10 9 8 13 13 C 1.50706 * 109.47002 * 89.99820 * 12 10 9 14 14 H 1.07990 * 120.00033 * 359.97438 * 13 12 10 15 15 C 1.37876 * 119.99403 * 180.02562 * 13 12 10 16 16 N 1.31516 * 120.00701 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99823 * 179.97438 * 15 13 12 18 18 H 1.48510 * 109.47096 * 59.99380 * 17 15 13 19 19 H 1.48498 * 109.47453 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46822 * 299.99962 * 17 15 13 21 21 C 1.38909 * 119.84913 * 359.73020 * 9 8 7 22 22 C 1.38110 * 119.92692 * 359.97438 * 21 9 8 23 23 H 1.08994 * 109.47197 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47287 * 300.00153 * 1 2 3 25 25 H 1.09004 * 109.46568 * 60.00209 * 1 2 3 26 26 H 1.08995 * 109.46766 * 239.99907 * 2 1 3 27 27 H 1.09001 * 109.46844 * 120.00237 * 2 1 3 28 28 H 1.00901 * 110.99869 * 300.00384 * 5 3 2 29 29 H 1.00896 * 110.99543 * 63.95506 * 5 3 2 30 30 H 1.08002 * 119.96401 * 359.97092 * 7 6 3 31 31 H 1.08006 * 120.03588 * 180.26731 * 8 7 6 32 32 H 1.09001 * 109.47083 * 90.00854 * 11 10 9 33 33 H 1.09004 * 109.47232 * 210.00101 * 11 10 9 34 34 H 1.08996 * 109.47291 * 330.00622 * 11 10 9 35 35 H 1.08999 * 109.46789 * 209.99554 * 12 10 9 36 36 H 1.08994 * 109.47312 * 329.99473 * 12 10 9 37 37 H 0.96991 * 120.00457 * 180.02562 * 16 15 13 38 38 H 1.08007 * 120.03847 * 179.97438 * 21 9 8 39 39 H 1.07993 * 119.96174 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6515 2.0992 -1.2553 6 6 3.5419 1.4443 0.1239 7 6 4.3261 1.1972 -0.9880 8 6 5.7028 1.2037 -0.8792 9 6 6.2996 1.4476 0.3513 10 7 7.6916 1.4496 0.4660 11 6 8.3191 1.7075 1.7644 12 6 8.5240 1.1937 -0.7121 13 6 8.8310 2.4974 -1.4029 14 1 8.4444 3.4237 -1.0046 15 6 9.6047 2.5072 -2.5441 16 7 10.0751 1.3791 -3.0295 17 14 9.9847 4.1231 -3.4010 18 1 10.7118 5.0198 -2.4667 19 1 10.8286 3.8637 -4.5950 20 1 8.7162 4.7704 -3.8219 21 6 5.5088 1.6898 1.4673 22 6 4.1326 1.6879 1.3502 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.0423 1.6178 -2.0513 29 1 0.6477 2.1683 -1.3315 30 1 3.8615 1.0028 -1.9434 31 1 6.3148 1.0149 -1.7489 32 1 8.4593 0.7651 2.2939 33 1 9.2867 2.1858 1.6117 34 1 7.6785 2.3636 2.3537 35 1 9.4549 0.7184 -0.4028 36 1 7.9905 0.5358 -1.3980 37 1 10.6197 1.3861 -3.8321 38 1 5.9695 1.8793 2.4256 39 1 3.5173 1.8765 2.2174 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234048893.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:02 Heat of formation + Delta-G solvation = 20.260359 kcal Electronic energy + Delta-G solvation = -17850.593923 eV Core-core repulsion = 15178.481131 eV Total energy + Delta-G solvation = -2672.112792 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.19133 -37.02863 -34.82927 -32.64492 -30.92022 -30.38913 -29.23721 -27.74714 -25.83123 -24.24749 -22.56971 -21.80654 -20.68194 -19.34921 -16.90265 -16.48681 -15.83108 -15.08890 -14.77256 -14.43326 -14.32601 -14.14619 -13.68722 -13.57977 -12.94388 -12.72593 -12.41261 -12.24571 -12.06567 -11.81555 -11.43975 -11.35981 -11.22364 -11.01501 -10.84631 -10.64778 -10.52006 -10.23396 -9.87432 -9.72115 -8.85653 -8.50944 -8.48406 -8.23355 -6.42704 -5.99152 -4.15655 2.14314 2.29116 3.30023 3.34008 3.38065 4.17861 4.42928 4.49499 4.79098 4.94886 5.01511 5.07336 5.23242 5.42051 5.54852 5.58888 5.67396 5.70434 5.85031 5.87374 6.02322 6.04289 6.10047 6.17432 6.30582 6.43922 6.47205 6.66302 6.97598 7.04034 7.19796 7.23527 7.31897 7.40998 7.55648 7.64188 7.82870 8.17559 8.29735 8.52071 8.93413 9.51223 10.97350 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.026268 B = 0.005233 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.675923 B = 5349.190924 C = 5933.016553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.156 4.156 3 C 0.146 3.854 4 H 0.077 0.923 5 N -0.840 5.840 6 C -0.159 4.159 7 C -0.060 4.060 8 C -0.186 4.186 9 C 0.238 3.762 10 N -0.617 5.617 11 C 0.099 3.901 12 C 0.250 3.750 13 C -0.532 4.532 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.896 5.896 17 Si 0.896 3.104 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.219 4.219 22 C -0.069 4.069 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.339 0.661 29 H 0.334 0.666 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.035 0.965 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.029 0.971 36 H 0.035 0.965 37 H 0.264 0.736 38 H 0.113 0.887 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.118 -2.369 6.762 15.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.195 4.195 3 C 0.035 3.965 4 H 0.096 0.904 5 N -0.370 5.370 6 C -0.162 4.162 7 C -0.079 4.079 8 C -0.208 4.208 9 C 0.131 3.869 10 N -0.323 5.323 11 C -0.045 4.045 12 C 0.130 3.870 13 C -0.571 4.571 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.535 5.535 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.243 4.243 22 C -0.088 4.088 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.153 0.847 29 H 0.147 0.853 30 H 0.125 0.875 31 H 0.148 0.852 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.131 0.869 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.342 -1.809 6.899 15.129 hybrid contribution -0.074 0.000 -0.781 0.785 sum -13.416 -1.809 6.118 14.856 Atomic orbital electron populations 1.21817 0.96268 1.01530 1.01498 1.22387 0.95313 0.99022 1.02816 1.20137 0.92326 0.91342 0.92734 0.90441 1.58953 1.15252 1.58619 1.04206 1.19158 0.93434 1.09589 0.94048 1.20478 0.92881 0.97622 0.96952 1.20861 0.94500 1.08201 0.97258 1.17938 0.84024 0.91578 0.93363 1.47074 1.02048 1.73537 1.09591 1.21462 0.98434 0.99113 0.85524 1.19268 0.89471 0.96454 0.81825 1.21557 1.31788 0.93751 1.09957 0.92296 1.24954 0.95585 0.96573 0.96892 1.69918 1.35104 1.25722 1.22757 0.86584 0.78443 0.83699 0.78906 1.20245 1.21195 1.20046 1.20524 0.93456 1.12613 0.97673 1.20460 0.93807 0.98487 0.96095 0.92837 0.92690 0.93071 0.92007 0.91404 0.84704 0.85320 0.87532 0.85151 0.94690 0.91495 0.92710 0.95252 0.94680 0.92613 0.86918 0.87494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.68 37.16 0.36 -0.96 16 2 C -0.16 -1.68 5.55 -26.73 -0.15 -1.83 16 3 C 0.15 1.83 3.04 -68.86 -0.21 1.62 16 4 H 0.08 0.95 8.00 -51.93 -0.42 0.53 16 5 N -0.84 -10.04 9.01 -5.65 -0.05 -10.10 16 6 C -0.16 -2.52 4.96 -104.59 -0.52 -3.04 16 7 C -0.06 -1.05 9.28 -39.61 -0.37 -1.42 16 8 C -0.19 -3.84 9.21 -39.38 -0.36 -4.20 16 9 C 0.24 4.92 6.55 -83.79 -0.55 4.38 16 10 N -0.62 -13.44 2.99 -181.00 -0.54 -13.99 16 11 C 0.10 1.77 10.19 59.85 0.61 2.38 16 12 C 0.25 6.34 4.91 -5.19 -0.03 6.32 16 13 C -0.53 -14.70 9.39 -34.44 -0.32 -15.02 16 14 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.90 -25.84 13.29 55.43 0.74 -25.10 16 17 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.22 -3.92 9.21 -39.38 -0.36 -4.28 16 22 C -0.07 -1.11 9.66 -39.61 -0.38 -1.49 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.40 6.87 -51.93 -0.36 0.04 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.34 3.94 7.35 -39.29 -0.29 3.65 16 29 H 0.33 3.22 7.55 -39.29 -0.30 2.92 16 30 H 0.11 1.66 6.67 -52.49 -0.35 1.31 16 31 H 0.13 2.97 6.14 -52.48 -0.32 2.64 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 34 H 0.05 0.87 6.20 -51.93 -0.32 0.55 16 35 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 36 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.11 1.81 6.14 -52.48 -0.32 1.49 16 39 H 0.11 1.43 8.03 -52.49 -0.42 1.01 16 LS Contribution 315.35 15.07 4.75 4.75 Total: -1.00 -29.32 315.35 -8.42 -37.74 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.91 Total: 6.12 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -2.38 Total: -15.94 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.14 Total: -49.18 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.32 -8.42 -37.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234048893.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.001 kcal (2) G-P(sol) polarization free energy of solvation -29.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds