Wall clock time and date at job start Mon Mar 30 2020 06:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47139 * 2 1 4 4 H 1.09001 * 109.47396 * 54.99706 * 3 2 1 5 5 N 1.46905 * 109.47084 * 294.99736 * 3 2 1 6 6 C 1.50700 * 109.47064 * 174.99796 * 3 2 1 7 7 C 1.38287 * 119.92371 * 79.72875 * 6 3 2 8 8 C 1.38101 * 120.07272 * 179.72649 * 7 6 3 9 9 C 1.38911 * 119.92614 * 0.54336 * 8 7 6 10 10 N 1.39672 * 120.07594 * 179.74548 * 9 8 7 11 11 C 1.46502 * 119.99827 * 179.97438 * 10 9 8 12 12 C 1.46501 * 119.99988 * 359.97438 * 10 9 8 13 13 C 1.50706 * 109.47002 * 89.99820 * 12 10 9 14 14 H 1.07990 * 120.00033 * 359.97438 * 13 12 10 15 15 C 1.37876 * 119.99403 * 180.02562 * 13 12 10 16 16 N 1.31516 * 120.00701 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99823 * 179.97438 * 15 13 12 18 18 H 1.48510 * 109.47096 * 59.99380 * 17 15 13 19 19 H 1.48498 * 109.47453 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46822 * 299.99962 * 17 15 13 21 21 C 1.38909 * 119.84913 * 359.73020 * 9 8 7 22 22 C 1.38110 * 119.92692 * 359.97438 * 21 9 8 23 23 H 1.08994 * 109.47197 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47287 * 300.00153 * 1 2 3 25 25 H 1.09004 * 109.46568 * 60.00209 * 1 2 3 26 26 H 1.08995 * 109.46766 * 239.99907 * 2 1 3 27 27 H 1.09001 * 109.46844 * 120.00237 * 2 1 3 28 28 H 1.00901 * 110.99869 * 300.00384 * 5 3 2 29 29 H 1.00896 * 110.99543 * 63.95506 * 5 3 2 30 30 H 1.08002 * 119.96401 * 359.97092 * 7 6 3 31 31 H 1.08006 * 120.03588 * 180.26731 * 8 7 6 32 32 H 1.09001 * 109.47083 * 90.00854 * 11 10 9 33 33 H 1.09004 * 109.47232 * 210.00101 * 11 10 9 34 34 H 1.08996 * 109.47291 * 330.00622 * 11 10 9 35 35 H 1.08999 * 109.46789 * 209.99554 * 12 10 9 36 36 H 1.08994 * 109.47312 * 329.99473 * 12 10 9 37 37 H 0.96991 * 120.00457 * 180.02562 * 16 15 13 38 38 H 1.08007 * 120.03847 * 179.97438 * 21 9 8 39 39 H 1.07993 * 119.96174 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6515 2.0992 -1.2553 6 6 3.5419 1.4443 0.1239 7 6 4.3261 1.1972 -0.9880 8 6 5.7028 1.2037 -0.8792 9 6 6.2996 1.4476 0.3513 10 7 7.6916 1.4496 0.4660 11 6 8.3191 1.7075 1.7644 12 6 8.5240 1.1937 -0.7121 13 6 8.8310 2.4974 -1.4029 14 1 8.4444 3.4237 -1.0046 15 6 9.6047 2.5072 -2.5441 16 7 10.0751 1.3791 -3.0295 17 14 9.9847 4.1231 -3.4010 18 1 10.7118 5.0198 -2.4667 19 1 10.8286 3.8637 -4.5950 20 1 8.7162 4.7704 -3.8219 21 6 5.5088 1.6898 1.4673 22 6 4.1326 1.6879 1.3502 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.0423 1.6178 -2.0513 29 1 0.6477 2.1683 -1.3315 30 1 3.8615 1.0028 -1.9434 31 1 6.3148 1.0149 -1.7489 32 1 8.4593 0.7651 2.2939 33 1 9.2867 2.1858 1.6117 34 1 7.6785 2.3636 2.3537 35 1 9.4549 0.7184 -0.4028 36 1 7.9905 0.5358 -1.3980 37 1 10.6197 1.3861 -3.8321 38 1 5.9695 1.8793 2.4256 39 1 3.5173 1.8765 2.2174 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234048893.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:01 Heat of formation + Delta-G solvation = 2.694874 kcal Electronic energy + Delta-G solvation = -17851.355620 eV Core-core repulsion = 15178.481131 eV Total energy + Delta-G solvation = -2672.874489 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.57407 -38.30809 -36.23768 -34.66947 -32.00532 -31.63156 -30.66440 -29.51652 -27.20286 -25.75798 -24.10842 -23.14732 -21.95037 -20.68136 -18.63525 -18.29168 -17.19860 -16.54172 -16.30391 -15.68006 -15.54991 -15.35878 -15.15006 -14.75315 -14.43286 -14.19831 -14.00273 -13.49246 -13.28866 -13.15455 -13.06423 -12.92122 -12.64359 -12.52730 -12.31925 -12.14644 -11.79354 -11.73212 -11.65392 -11.35451 -10.64081 -10.39519 -9.65804 -9.48564 -8.35533 -7.77768 -6.37657 0.71491 0.88263 1.37010 1.39174 1.47426 2.34535 2.64475 3.05975 3.11358 3.82293 3.97457 4.08117 4.21270 4.23813 4.28774 4.42720 4.58878 4.63980 4.70341 4.74736 4.84142 4.88514 4.94204 5.01309 5.10612 5.17481 5.18303 5.26845 5.34309 5.40960 5.59237 5.69338 5.70733 5.92779 6.07286 6.21631 6.36351 6.50528 6.71696 6.82855 6.94992 7.34313 8.83106 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.026268 B = 0.005233 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.675923 B = 5349.190924 C = 5933.016553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.151 4.151 3 C 0.150 3.850 4 H 0.090 0.910 5 N -0.850 5.850 6 C -0.150 4.150 7 C -0.063 4.063 8 C -0.216 4.216 9 C 0.207 3.793 10 N -0.633 5.633 11 C 0.098 3.902 12 C 0.267 3.733 13 C -0.543 4.543 14 H 0.048 0.952 15 C 0.014 3.986 16 N -0.926 5.926 17 Si 0.961 3.039 18 H -0.268 1.268 19 H -0.277 1.277 20 H -0.274 1.274 21 C -0.215 4.215 22 C -0.067 4.067 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.340 0.660 29 H 0.349 0.651 30 H 0.120 0.880 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.009 0.991 36 H 0.010 0.990 37 H 0.268 0.732 38 H 0.134 0.866 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.392 -1.326 7.969 18.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.190 4.190 3 C 0.039 3.961 4 H 0.108 0.892 5 N -0.382 5.382 6 C -0.153 4.153 7 C -0.082 4.082 8 C -0.239 4.239 9 C 0.103 3.897 10 N -0.341 5.341 11 C -0.045 4.045 12 C 0.146 3.854 13 C -0.582 4.582 14 H 0.066 0.934 15 C -0.185 4.185 16 N -0.566 5.566 17 Si 0.786 3.214 18 H -0.193 1.193 19 H -0.202 1.202 20 H -0.199 1.199 21 C -0.238 4.238 22 C -0.086 4.086 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.153 0.847 29 H 0.164 0.836 30 H 0.138 0.862 31 H 0.112 0.888 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.027 0.973 36 H 0.028 0.972 37 H 0.076 0.924 38 H 0.151 0.849 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.656 -0.765 8.132 17.659 hybrid contribution 0.497 -0.361 -1.129 1.285 sum -15.159 -1.126 7.003 16.737 Atomic orbital electron populations 1.21781 0.94275 1.02271 1.02343 1.22304 0.97001 0.97492 1.02245 1.20136 0.89775 0.92727 0.93510 0.89158 1.58914 1.16611 1.58653 1.03984 1.19619 0.95461 1.06897 0.93299 1.20647 0.91717 0.97310 0.98545 1.20773 0.95754 1.10816 0.96528 1.18224 0.83727 0.93371 0.94417 1.46941 1.02476 1.75112 1.09577 1.21594 0.98175 1.00455 0.84232 1.18754 0.88770 0.95000 0.82921 1.21757 1.31858 0.94057 1.10549 0.93377 1.25770 0.95317 0.99969 0.97488 1.70025 1.35642 1.27724 1.23226 0.85566 0.78260 0.79563 0.78046 1.19328 1.20235 1.19948 1.20792 0.94135 1.11467 0.97388 1.20918 0.93414 0.96890 0.97396 0.92219 0.91834 0.92240 0.92880 0.91782 0.84661 0.83588 0.86196 0.88817 0.92930 0.92577 0.90363 0.97291 0.97215 0.92357 0.84871 0.83780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.68 71.98 0.70 -1.37 16 2 C -0.15 -2.84 5.55 30.59 0.17 -2.67 16 3 C 0.15 3.29 3.04 44.17 0.13 3.43 16 4 H 0.09 1.82 8.00 -2.39 -0.02 1.80 16 5 N -0.85 -18.10 9.01 -171.79 -1.55 -19.65 16 6 C -0.15 -4.44 4.96 -19.84 -0.10 -4.54 16 7 C -0.06 -2.21 9.28 22.25 0.21 -2.01 16 8 C -0.22 -9.34 9.21 22.40 0.21 -9.13 16 9 C 0.21 8.72 6.55 38.21 0.25 8.97 16 10 N -0.63 -28.47 2.99 -726.56 -2.17 -30.65 16 11 C 0.10 3.50 10.19 127.77 1.30 4.80 16 12 C 0.27 14.37 4.91 85.63 0.42 14.79 16 13 C -0.54 -31.22 9.39 25.60 0.24 -30.98 16 14 H 0.05 2.80 7.81 -2.92 -0.02 2.78 16 15 C 0.01 0.79 5.46 84.65 0.46 1.25 16 16 N -0.93 -55.08 13.29 21.45 0.28 -54.79 16 17 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 21 C -0.22 -7.30 9.21 22.40 0.21 -7.10 16 22 C -0.07 -1.96 9.66 22.25 0.21 -1.74 16 23 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.06 0.73 6.87 -2.39 -0.02 0.71 16 26 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.34 7.26 7.35 -89.69 -0.66 6.60 16 29 H 0.35 5.64 7.55 -89.70 -0.68 4.97 16 30 H 0.12 3.74 6.67 -2.91 -0.02 3.72 16 31 H 0.09 4.66 6.14 -2.91 -0.02 4.64 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 2.08 8.07 -2.38 -0.02 2.06 16 34 H 0.08 2.37 6.20 -2.39 -0.01 2.35 16 35 H 0.01 0.51 8.07 -2.39 -0.02 0.49 16 36 H 0.01 0.57 6.20 -2.39 -0.01 0.56 16 37 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 38 H 0.13 3.90 6.14 -2.91 -0.02 3.88 16 39 H 0.14 3.15 8.03 -2.91 -0.02 3.13 16 Total: -1.00 -64.95 315.35 2.71 -62.24 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -0.29 Total: 22.34 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 4.41 Total: -26.29 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -3.44 Total: -105.09 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -64.95 2.71 -62.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234048893.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.931 kcal (2) G-P(sol) polarization free energy of solvation -64.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds