Wall clock time and date at job start Mon Mar 30 2020 06:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00020 * 2 1 4 4 C 1.50706 * 109.46949 * 89.99910 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72205 * 4 3 2 6 6 C 1.37879 * 119.99394 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47353 * 89.99430 * 8 6 4 10 10 H 1.48494 * 109.47031 * 209.99977 * 8 6 4 11 11 H 1.48504 * 109.46680 * 329.99678 * 8 6 4 12 12 C 1.39008 * 119.99895 * 179.97438 * 2 1 3 13 13 C 1.39138 * 119.70342 * 184.73246 * 12 2 1 14 14 C 1.38302 * 119.09635 * 179.76049 * 13 12 2 15 15 C 1.38891 * 118.50325 * 0.50094 * 14 13 12 16 16 C 1.50694 * 120.33412 * 179.71106 * 15 14 13 17 17 C 1.53005 * 109.47116 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47345 * 300.02721 * 16 15 14 19 19 C 1.53001 * 109.47203 * 60.02624 * 16 15 14 20 20 C 1.38028 * 119.32712 * 359.73410 * 15 14 13 21 21 N 1.31974 * 120.85486 * 0.02562 * 20 15 14 22 22 H 1.09001 * 109.47412 * 89.99916 * 1 2 3 23 23 H 1.09000 * 109.47567 * 210.00198 * 1 2 3 24 24 H 1.09002 * 109.47279 * 329.99646 * 1 2 3 25 25 H 1.09000 * 109.47175 * 329.99936 * 3 2 1 26 26 H 1.09001 * 109.47297 * 209.99443 * 3 2 1 27 27 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 28 28 H 1.08001 * 120.45414 * 359.97167 * 13 12 2 29 29 H 1.07995 * 120.75071 * 180.26169 * 14 13 12 30 30 H 1.08998 * 109.46495 * 59.99711 * 17 16 15 31 31 H 1.08996 * 109.46879 * 179.97438 * 17 16 15 32 32 H 1.09003 * 109.47033 * 300.00265 * 17 16 15 33 33 H 1.08993 * 109.47191 * 59.99922 * 18 16 15 34 34 H 1.09001 * 109.47120 * 180.02562 * 18 16 15 35 35 H 1.09005 * 109.46669 * 299.99905 * 18 16 15 36 36 H 1.09003 * 109.47171 * 59.99596 * 19 16 15 37 37 H 1.09001 * 109.47263 * 179.97438 * 19 16 15 38 38 H 1.09001 * 109.46817 * 299.99898 * 19 16 15 39 39 H 1.07994 * 119.56787 * 179.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 1 2.0938 1.0983 2.2417 6 6 3.1268 2.8775 1.6727 7 7 3.3456 3.2573 2.9127 8 14 3.7338 3.9287 0.2530 9 1 2.6824 4.9077 -0.1230 10 1 4.9620 4.6549 0.6645 11 1 4.0396 3.0591 -0.9114 12 6 2.1600 -1.2039 0.0005 13 6 3.5478 -1.1987 0.1002 14 6 4.2262 -2.4039 0.1046 15 6 3.4921 -3.5781 -0.0019 16 6 4.1897 -4.9139 -0.0079 17 6 3.1517 -6.0307 -0.1354 18 6 5.1568 -4.9789 -1.1918 19 6 4.9688 -5.0883 1.2972 20 6 2.1172 -3.5091 -0.1026 21 7 1.4959 -2.3448 -0.0993 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5139 25 1 1.6084 2.0284 -0.5138 26 1 3.1499 1.1384 -0.5137 27 1 3.8224 4.0833 3.0899 28 1 4.0876 -0.2664 0.1767 29 1 5.3028 -2.4312 0.1851 30 1 2.5967 -5.9064 -1.0652 31 1 3.6563 -6.9968 -0.1402 32 1 2.4627 -5.9844 0.7080 33 1 5.8962 -4.1833 -1.1010 34 1 5.6610 -5.9452 -1.1964 35 1 4.6016 -4.8546 -2.1216 36 1 4.2799 -5.0419 2.1406 37 1 5.4730 -6.0546 1.2930 38 1 5.7083 -4.2926 1.3880 39 1 1.5426 -4.4197 -0.1860 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234264738.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:30 Heat of formation + Delta-G solvation = 31.362801 kcal Electronic energy + Delta-G solvation = -18172.254222 eV Core-core repulsion = 15500.622868 eV Total energy + Delta-G solvation = -2671.631354 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.97981 -37.29632 -35.20550 -32.58707 -31.67983 -29.25751 -28.43296 -27.41446 -27.15516 -25.16933 -23.17909 -22.08622 -20.75575 -18.90983 -16.99632 -16.85283 -15.94139 -15.21256 -14.52102 -14.24176 -14.21355 -13.84791 -13.63786 -13.39077 -12.65114 -12.61340 -12.41826 -12.29229 -12.12129 -11.95973 -11.66128 -11.63028 -11.46390 -10.97792 -10.90507 -10.82945 -10.61853 -10.44603 -10.22545 -9.63553 -9.16049 -8.91894 -8.74619 -8.68104 -6.63378 -6.18176 -4.18881 1.94109 2.04999 3.19145 3.27263 3.28111 3.85979 4.28981 4.50574 4.83798 4.90956 5.09730 5.11955 5.17624 5.43207 5.51003 5.60613 5.67304 5.77157 5.81315 5.87318 5.93539 6.01214 6.06190 6.10814 6.14508 6.17238 6.30276 6.40265 6.41479 6.44842 6.58052 6.69757 6.77420 6.97092 7.24912 7.47491 7.73612 8.26864 8.40629 8.82308 8.91995 9.41285 10.94800 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.028547 B = 0.005720 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.610105 B = 4893.601648 C = 5339.245571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.590 5.590 3 C 0.223 3.777 4 C -0.537 4.537 5 H 0.077 0.923 6 C 0.074 3.926 7 N -0.893 5.893 8 Si 0.872 3.128 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.264 1.264 12 C 0.412 3.588 13 C -0.221 4.221 14 C -0.035 4.035 15 C -0.209 4.209 16 C -0.011 4.011 17 C -0.143 4.143 18 C -0.136 4.136 19 C -0.137 4.137 20 C 0.140 3.860 21 N -0.556 5.556 22 H 0.035 0.965 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.029 0.971 26 H 0.032 0.968 27 H 0.266 0.734 28 H 0.139 0.861 29 H 0.121 0.879 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.567 -14.393 -7.425 16.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.299 5.299 3 C 0.102 3.898 4 C -0.576 4.576 5 H 0.095 0.905 6 C -0.129 4.129 7 N -0.531 5.531 8 Si 0.698 3.302 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.189 1.189 12 C 0.176 3.824 13 C -0.246 4.246 14 C -0.061 4.061 15 C -0.215 4.215 16 C -0.012 4.012 17 C -0.200 4.200 18 C -0.194 4.194 19 C -0.195 4.195 20 C -0.018 4.018 21 N -0.274 5.274 22 H 0.054 0.946 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.157 0.843 29 H 0.139 0.861 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.620 -13.966 -7.379 15.808 hybrid contribution 1.262 0.796 -0.409 1.547 sum 1.882 -13.170 -7.788 15.416 Atomic orbital electron populations 1.21386 0.80220 1.02285 0.99798 1.46575 1.05199 1.02960 1.75161 1.19725 0.91946 0.80093 0.98064 1.21453 1.37074 1.07564 0.91468 0.90485 1.24887 0.95337 0.97163 0.95504 1.69901 1.41090 1.23417 1.18668 0.86916 0.79033 0.81157 0.83051 1.19920 1.20852 1.18908 1.18406 0.88428 0.86043 0.89512 1.21593 0.93824 0.99574 1.09621 1.21024 0.99301 0.91335 0.94429 1.20202 0.94794 0.94598 1.11870 1.19187 0.94772 0.91832 0.95407 1.21936 0.98768 0.97489 1.01826 1.21880 0.98719 1.01142 0.97627 1.21888 0.99840 1.01033 0.96717 1.22224 0.91267 0.94346 0.93924 1.67192 1.40485 0.97505 1.22245 0.94646 0.91621 0.91667 0.95339 0.94991 0.92433 0.84344 0.86092 0.92416 0.92773 0.92327 0.92654 0.92960 0.92762 0.92613 0.92978 0.92587 0.83738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.01 10.42 59.84 0.62 2.64 16 2 N -0.59 -12.90 2.97 -183.10 -0.54 -13.44 16 3 C 0.22 5.25 3.86 -5.19 -0.02 5.23 16 4 C -0.54 -14.81 9.90 -34.44 -0.34 -15.15 16 5 H 0.08 2.40 8.06 -52.49 -0.42 1.97 16 6 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 7 N -0.89 -26.66 13.96 55.43 0.77 -25.89 16 8 Si 0.87 20.40 27.47 -169.99 -4.67 15.73 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 12 C 0.41 8.73 7.37 -155.02 -1.14 7.58 16 13 C -0.22 -4.45 9.19 -39.22 -0.36 -4.81 16 14 C -0.04 -0.59 8.84 -39.32 -0.35 -0.94 16 15 C -0.21 -3.17 4.76 -104.46 -0.50 -3.66 16 16 C -0.01 -0.13 0.86 -155.66 -0.13 -0.26 16 17 C -0.14 -1.43 7.14 37.16 0.27 -1.17 16 18 C -0.14 -1.44 8.29 37.16 0.31 -1.14 16 19 C -0.14 -1.54 8.29 37.16 0.31 -1.23 16 20 C 0.14 2.29 10.15 -17.57 -0.18 2.11 16 21 N -0.56 -10.85 9.16 -12.44 -0.11 -10.97 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.07 1.21 7.45 -51.93 -0.39 0.82 16 24 H 0.06 1.21 8.07 -51.93 -0.42 0.79 16 25 H 0.03 0.65 7.50 -51.93 -0.39 0.26 16 26 H 0.03 0.75 5.43 -51.93 -0.28 0.47 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.14 2.95 6.22 -52.49 -0.33 2.63 16 29 H 0.12 1.75 7.25 -52.49 -0.38 1.37 16 30 H 0.06 0.56 7.52 -51.93 -0.39 0.17 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.59 7.53 -51.93 -0.39 0.20 16 33 H 0.05 0.59 7.45 -51.93 -0.39 0.21 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 39 H 0.15 1.96 5.89 -52.49 -0.31 1.65 16 LS Contribution 311.84 15.07 4.70 4.70 Total: -1.00 -30.06 311.84 -7.64 -37.71 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.18 Total: 0.98 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -1.61 Total: -8.82 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.12 Total: -50.30 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.67 Total: 15.73 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.06 -7.64 -37.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234264738.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.070 kcal (2) G-P(sol) polarization free energy of solvation -30.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds