Wall clock time and date at job start Mon Mar 30 2020 06:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00020 * 2 1 4 4 C 1.50706 * 109.46949 * 89.99910 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72205 * 4 3 2 6 6 C 1.37879 * 119.99394 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47353 * 89.99430 * 8 6 4 10 10 H 1.48494 * 109.47031 * 209.99977 * 8 6 4 11 11 H 1.48504 * 109.46680 * 329.99678 * 8 6 4 12 12 C 1.39008 * 119.99895 * 179.97438 * 2 1 3 13 13 C 1.39138 * 119.70342 * 184.73246 * 12 2 1 14 14 C 1.38302 * 119.09635 * 179.76049 * 13 12 2 15 15 C 1.38891 * 118.50325 * 0.50094 * 14 13 12 16 16 C 1.50694 * 120.33412 * 179.71106 * 15 14 13 17 17 C 1.53005 * 109.47116 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47345 * 300.02721 * 16 15 14 19 19 C 1.53001 * 109.47203 * 60.02624 * 16 15 14 20 20 C 1.38028 * 119.32712 * 359.73410 * 15 14 13 21 21 N 1.31974 * 120.85486 * 0.02562 * 20 15 14 22 22 H 1.09001 * 109.47412 * 89.99916 * 1 2 3 23 23 H 1.09000 * 109.47567 * 210.00198 * 1 2 3 24 24 H 1.09002 * 109.47279 * 329.99646 * 1 2 3 25 25 H 1.09000 * 109.47175 * 329.99936 * 3 2 1 26 26 H 1.09001 * 109.47297 * 209.99443 * 3 2 1 27 27 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 28 28 H 1.08001 * 120.45414 * 359.97167 * 13 12 2 29 29 H 1.07995 * 120.75071 * 180.26169 * 14 13 12 30 30 H 1.08998 * 109.46495 * 59.99711 * 17 16 15 31 31 H 1.08996 * 109.46879 * 179.97438 * 17 16 15 32 32 H 1.09003 * 109.47033 * 300.00265 * 17 16 15 33 33 H 1.08993 * 109.47191 * 59.99922 * 18 16 15 34 34 H 1.09001 * 109.47120 * 180.02562 * 18 16 15 35 35 H 1.09005 * 109.46669 * 299.99905 * 18 16 15 36 36 H 1.09003 * 109.47171 * 59.99596 * 19 16 15 37 37 H 1.09001 * 109.47263 * 179.97438 * 19 16 15 38 38 H 1.09001 * 109.46817 * 299.99898 * 19 16 15 39 39 H 1.07994 * 119.56787 * 179.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 1 2.0938 1.0983 2.2417 6 6 3.1268 2.8775 1.6727 7 7 3.3456 3.2573 2.9127 8 14 3.7338 3.9287 0.2530 9 1 2.6824 4.9077 -0.1230 10 1 4.9620 4.6549 0.6645 11 1 4.0396 3.0591 -0.9114 12 6 2.1600 -1.2039 0.0005 13 6 3.5478 -1.1987 0.1002 14 6 4.2262 -2.4039 0.1046 15 6 3.4921 -3.5781 -0.0019 16 6 4.1897 -4.9139 -0.0079 17 6 3.1517 -6.0307 -0.1354 18 6 5.1568 -4.9789 -1.1918 19 6 4.9688 -5.0883 1.2972 20 6 2.1172 -3.5091 -0.1026 21 7 1.4959 -2.3448 -0.0993 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5139 25 1 1.6084 2.0284 -0.5138 26 1 3.1499 1.1384 -0.5137 27 1 3.8224 4.0833 3.0899 28 1 4.0876 -0.2664 0.1767 29 1 5.3028 -2.4312 0.1851 30 1 2.5967 -5.9064 -1.0652 31 1 3.6563 -6.9968 -0.1402 32 1 2.4627 -5.9844 0.7080 33 1 5.8962 -4.1833 -1.1010 34 1 5.6610 -5.9452 -1.1964 35 1 4.6016 -4.8546 -2.1216 36 1 4.2799 -5.0419 2.1406 37 1 5.4730 -6.0546 1.2930 38 1 5.7083 -4.2926 1.3880 39 1 1.5426 -4.4197 -0.1860 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234264738.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:30 Heat of formation + Delta-G solvation = 14.717131 kcal Electronic energy + Delta-G solvation = -18172.976032 eV Core-core repulsion = 15500.622868 eV Total energy + Delta-G solvation = -2672.353164 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.35202 -38.57905 -36.64342 -34.64161 -33.11167 -30.79938 -30.12142 -28.35270 -28.00444 -26.72371 -24.82861 -23.55718 -22.28751 -20.04895 -19.10572 -18.36564 -17.39903 -16.57942 -16.17857 -15.64397 -15.57489 -15.21861 -14.90505 -14.64217 -14.40998 -13.96500 -13.87491 -13.49215 -13.45900 -13.17463 -13.04158 -12.78497 -12.64017 -12.46558 -12.44196 -12.08445 -11.80921 -11.79094 -11.72789 -11.48673 -10.83790 -10.55436 -10.48627 -10.14884 -8.34566 -8.18416 -6.40874 0.51507 0.64312 1.35545 1.36757 1.47425 2.28806 2.30964 2.99403 3.08640 3.73406 3.84628 4.00006 4.12795 4.23606 4.28770 4.47983 4.52220 4.64319 4.68233 4.75856 4.83292 4.87264 4.89313 4.95609 4.99007 5.01764 5.11002 5.12344 5.15222 5.26705 5.32777 5.41830 5.51032 5.54418 5.68177 5.86784 5.98838 6.37738 6.62896 6.70905 7.21337 7.38767 8.83155 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.028547 B = 0.005720 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.610105 B = 4893.601648 C = 5339.245571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.609 5.609 3 C 0.235 3.765 4 C -0.539 4.539 5 H 0.023 0.977 6 C 0.016 3.984 7 N -0.944 5.944 8 Si 0.947 3.053 9 H -0.261 1.261 10 H -0.280 1.280 11 H -0.244 1.244 12 C 0.385 3.615 13 C -0.248 4.248 14 C -0.033 4.033 15 C -0.192 4.192 16 C -0.012 4.012 17 C -0.143 4.143 18 C -0.135 4.135 19 C -0.138 4.138 20 C 0.132 3.868 21 N -0.567 5.567 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.042 0.958 26 H 0.036 0.964 27 H 0.269 0.731 28 H 0.117 0.883 29 H 0.143 0.857 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.355 -16.215 -9.490 18.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.320 5.320 3 C 0.113 3.887 4 C -0.578 4.578 5 H 0.041 0.959 6 C -0.183 4.183 7 N -0.584 5.584 8 Si 0.769 3.231 9 H -0.186 1.186 10 H -0.206 1.206 11 H -0.167 1.167 12 C 0.151 3.849 13 C -0.274 4.274 14 C -0.058 4.058 15 C -0.197 4.197 16 C -0.012 4.012 17 C -0.200 4.200 18 C -0.192 4.192 19 C -0.195 4.195 20 C -0.025 4.025 21 N -0.285 5.285 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.135 0.865 29 H 0.161 0.839 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.394 -15.836 -9.455 18.497 hybrid contribution 1.032 1.145 0.327 1.576 sum 2.426 -14.691 -9.128 17.465 Atomic orbital electron populations 1.21425 0.78981 1.01898 1.01003 1.46552 1.06064 1.02712 1.76634 1.19445 0.92664 0.81410 0.95226 1.21582 1.36799 1.07073 0.92332 0.95871 1.25849 0.95297 0.98582 0.98543 1.70066 1.42516 1.24358 1.21479 0.85722 0.78566 0.79227 0.79549 1.18567 1.20592 1.16748 1.18587 0.88881 0.86396 0.91074 1.21581 0.93817 1.00097 1.11869 1.21314 1.00510 0.90767 0.93247 1.20651 0.94527 0.95952 1.08619 1.19307 0.95402 0.90160 0.96365 1.21943 0.98407 0.97694 1.01958 1.21868 0.98324 1.02344 0.96661 1.21894 0.99516 1.02225 0.95847 1.22848 0.92314 0.94324 0.93008 1.67202 1.41056 0.97871 1.22399 0.92491 0.91752 0.92285 0.94022 0.94569 0.92203 0.86456 0.83920 0.92017 0.90662 0.92500 0.93063 0.90709 0.93051 0.93675 0.90563 0.93209 0.80692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.18 10.42 127.77 1.33 5.51 16 2 N -0.61 -27.14 2.97 -733.22 -2.18 -29.32 16 3 C 0.24 11.20 3.86 85.63 0.33 11.53 16 4 C -0.54 -30.96 9.90 25.60 0.25 -30.71 16 5 H 0.02 1.53 8.06 -2.91 -0.02 1.51 16 6 C 0.02 0.90 5.47 84.66 0.46 1.36 16 7 N -0.94 -58.41 13.96 21.45 0.30 -58.11 16 8 Si 0.95 42.19 27.47 68.60 1.88 44.08 16 9 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 12 C 0.39 16.54 7.37 133.07 0.98 17.52 16 13 C -0.25 -10.19 9.19 22.50 0.21 -9.98 16 14 C -0.03 -1.07 8.84 22.44 0.20 -0.87 16 15 C -0.19 -5.48 4.76 -19.76 -0.09 -5.57 16 16 C -0.01 -0.23 0.86 -52.93 -0.05 -0.28 16 17 C -0.14 -2.33 7.14 71.98 0.51 -1.82 16 18 C -0.13 -2.39 8.29 71.98 0.60 -1.79 16 19 C -0.14 -2.69 8.29 71.98 0.60 -2.09 16 20 C 0.13 4.11 10.15 84.62 0.86 4.97 16 21 N -0.57 -21.91 9.16 -193.26 -1.77 -23.68 16 22 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.06 2.41 7.45 -2.39 -0.02 2.39 16 24 H 0.06 2.25 8.07 -2.39 -0.02 2.23 16 25 H 0.04 1.87 7.50 -2.39 -0.02 1.85 16 26 H 0.04 1.70 5.43 -2.39 -0.01 1.68 16 27 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 28 H 0.12 5.21 6.22 -2.91 -0.02 5.19 16 29 H 0.14 3.94 7.25 -2.91 -0.02 3.92 16 30 H 0.06 0.97 7.52 -2.39 -0.02 0.95 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.96 7.53 -2.39 -0.02 0.94 16 33 H 0.05 0.95 7.45 -2.39 -0.02 0.93 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.05 1.03 7.45 -2.39 -0.02 1.01 16 39 H 0.18 4.26 5.89 -2.91 -0.02 4.25 16 Total: -1.00 -67.65 311.84 5.38 -62.27 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.96 Total: 16.99 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 6.19 Total: -12.23 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -3.65 Total: -111.11 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.88 Total: 44.08 kcal Total: -67.65 5.38 -62.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234264738.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.983 kcal (2) G-P(sol) polarization free energy of solvation -67.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds