Wall clock time and date at job start Mon Mar 30 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47599 * 2 1 4 4 C 1.53007 * 109.47028 * 120.00135 * 2 1 3 5 5 C 1.52999 * 109.46897 * 299.99907 * 4 2 1 6 6 C 1.50706 * 109.46818 * 179.97438 * 5 4 2 7 7 C 1.38227 * 119.61686 * 125.02645 * 6 5 4 8 8 C 1.38627 * 119.15663 * 179.70253 * 7 6 5 9 9 C 1.38669 * 118.42388 * 0.51169 * 8 7 6 10 10 C 1.38186 * 119.16143 * 359.50231 * 9 8 7 11 11 N 1.31856 * 119.61480 * 304.99563 * 6 5 4 12 12 N 1.46904 * 109.47394 * 239.99652 * 2 1 3 13 13 C 1.46906 * 110.99458 * 60.00093 * 12 2 1 14 14 C 1.50701 * 109.47024 * 179.97438 * 13 12 2 15 15 H 1.08004 * 119.99855 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00135 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00068 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99895 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47092 * 89.99892 * 18 16 14 20 20 H 1.48502 * 109.46781 * 210.00249 * 18 16 14 21 21 H 1.48508 * 109.46825 * 329.99765 * 18 16 14 22 22 H 1.08996 * 109.47083 * 300.00444 * 1 2 3 23 23 H 1.08998 * 109.46598 * 59.99985 * 1 2 3 24 24 H 1.08994 * 109.47268 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47294 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.47106 * 300.00228 * 3 2 1 27 27 H 1.09006 * 109.46811 * 59.99829 * 3 2 1 28 28 H 1.08994 * 109.47135 * 179.97438 * 4 2 1 29 29 H 1.09003 * 109.46945 * 59.99926 * 4 2 1 30 30 H 1.08998 * 109.47200 * 60.00145 * 5 4 2 31 31 H 1.08994 * 109.47201 * 299.99925 * 5 4 2 32 32 H 1.07998 * 120.41947 * 359.94797 * 7 6 5 33 33 H 1.08008 * 120.78691 * 180.26734 * 8 7 6 34 34 H 1.08002 * 120.42244 * 179.78749 * 9 8 7 35 35 H 1.07996 * 119.61757 * 180.25243 * 10 9 8 36 36 H 1.00902 * 111.00211 * 183.95707 * 12 2 1 37 37 H 1.08996 * 109.47404 * 300.00239 * 13 12 2 38 38 H 1.09004 * 109.46422 * 60.00205 * 13 12 2 39 39 H 0.96995 * 120.00259 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5300 0.0000 2.4985 6 6 2.0318 -0.7109 3.7290 7 6 2.7379 -0.0054 4.6852 8 6 3.1897 -0.6674 5.8163 9 6 2.9225 -2.0226 5.9388 10 6 2.2108 -2.6615 4.9414 11 7 1.7916 -1.9984 3.8812 12 7 2.0197 -0.6926 -1.1994 13 6 1.5487 -0.0264 -2.4211 14 6 2.0703 -0.7630 -3.6279 15 1 2.6895 -1.6387 -3.5001 16 6 1.7572 -0.3190 -4.8951 17 7 2.2120 -0.9621 -5.9482 18 14 0.6869 1.1960 -5.1161 19 1 1.5468 2.4053 -5.1741 20 1 -0.0853 1.0765 -6.3789 21 1 -0.2516 1.3103 -3.9708 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 3.1301 1.4423 0.0005 26 1 1.6768 1.9562 -0.8899 27 1 1.6767 1.9562 0.8900 28 1 3.1299 -0.7217 1.2491 29 1 1.6766 -1.7490 1.2492 30 1 0.4400 0.0000 2.4985 31 1 1.8933 1.0276 2.4985 32 1 2.9317 1.0490 4.5547 33 1 3.7402 -0.1410 6.5821 34 1 3.2623 -2.5709 6.8050 35 1 1.9950 -3.7158 5.0312 36 1 3.0263 -0.7627 -1.1909 37 1 0.4589 -0.0265 -2.4379 38 1 1.9123 1.0011 -2.4377 39 1 1.9914 -0.6500 -6.8397 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238102212.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:13 Heat of formation + Delta-G solvation = 24.391179 kcal Electronic energy + Delta-G solvation = -17696.992235 eV Core-core repulsion = 15025.058569 eV Total energy + Delta-G solvation = -2671.933666 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.34822 -38.06637 -34.05620 -32.65639 -32.37948 -30.80493 -28.41377 -27.01558 -26.69195 -24.63639 -23.58438 -21.96551 -20.80476 -18.37507 -17.15250 -16.72356 -16.34367 -15.70435 -14.94234 -14.65682 -14.27543 -14.00786 -13.79866 -13.55960 -13.36575 -12.81764 -12.67780 -12.32820 -12.23733 -11.85387 -11.74440 -11.29271 -11.19186 -10.88829 -10.69786 -10.50295 -10.30034 -10.06631 -9.93870 -9.73640 -9.44603 -9.17300 -9.04044 -8.55171 -7.35492 -6.01461 -3.98169 0.96719 1.13298 3.30457 3.38080 3.40817 3.66388 4.20013 4.45508 4.51697 4.67240 4.88478 4.93935 5.02424 5.19362 5.26396 5.31747 5.44555 5.48847 5.59625 5.66040 5.73113 5.81637 5.94933 6.00157 6.01616 6.14758 6.24742 6.37083 6.38218 6.49608 6.55140 6.73121 6.77942 6.94766 7.13642 7.70162 7.91770 8.00640 8.44064 8.72718 9.07672 9.61126 11.12162 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.047826 B = 0.004039 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.318777 B = 6931.295070 C = 7158.800380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.106 3.894 3 C -0.184 4.184 4 C -0.093 4.093 5 C -0.074 4.074 6 C 0.140 3.860 7 C -0.175 4.175 8 C -0.075 4.075 9 C -0.187 4.187 10 C 0.103 3.897 11 N -0.477 5.477 12 N -0.669 5.669 13 C 0.161 3.839 14 C -0.513 4.513 15 H 0.078 0.922 16 C 0.067 3.933 17 N -0.902 5.902 18 Si 0.877 3.123 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.266 1.266 22 H 0.049 0.951 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.154 0.846 36 H 0.333 0.667 37 H 0.030 0.970 38 H -0.017 1.017 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.066 3.225 23.877 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.014 3.986 3 C -0.243 4.243 4 C -0.131 4.131 5 C -0.112 4.112 6 C 0.002 3.998 7 C -0.195 4.195 8 C -0.101 4.101 9 C -0.207 4.207 10 C -0.055 4.055 11 N -0.186 5.186 12 N -0.298 5.298 13 C 0.033 3.967 14 C -0.552 4.552 15 H 0.096 0.904 16 C -0.134 4.134 17 N -0.542 5.542 18 Si 0.704 3.296 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.191 1.191 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.172 0.828 36 H 0.151 0.849 37 H 0.048 0.952 38 H 0.000 1.000 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.922 2.311 23.012 23.147 hybrid contribution 0.618 2.062 0.447 2.199 sum -0.305 4.374 23.459 23.865 Atomic orbital electron populations 1.21904 0.94621 1.02319 1.00780 1.20905 0.95312 0.90873 0.91472 1.22647 1.00956 0.98956 1.01702 1.21454 0.99914 1.00477 0.91246 1.20770 1.01765 0.98126 0.90542 1.21457 0.93007 0.89925 0.95372 1.22026 1.00655 1.01505 0.95318 1.21566 0.96906 0.94570 0.97106 1.22110 1.01742 0.95662 1.01151 1.22804 0.93430 1.00167 0.89066 1.67543 1.19774 1.08760 1.22535 1.60642 1.15544 1.52797 1.00866 1.20078 0.96287 0.92250 0.88071 1.21117 1.31918 1.13453 0.88685 0.90414 1.24906 0.95798 0.96809 0.95908 1.69900 1.45848 1.40331 0.98084 0.86837 0.81247 0.83716 0.77787 1.20431 1.21220 1.19116 0.93209 0.92493 0.91914 0.93034 0.92163 0.92914 0.92655 0.90029 0.89535 0.90298 0.84936 0.85097 0.85069 0.82839 0.84910 0.95217 0.99987 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 7.89 37.16 0.29 -1.96 16 2 C 0.11 1.77 0.74 -131.60 -0.10 1.67 16 3 C -0.18 -2.81 7.88 37.15 0.29 -2.52 16 4 C -0.09 -1.35 4.39 -26.73 -0.12 -1.47 16 5 C -0.07 -0.88 4.91 -27.88 -0.14 -1.02 16 6 C 0.14 1.69 6.18 -82.58 -0.51 1.18 16 7 C -0.18 -1.73 9.71 -39.44 -0.38 -2.11 16 8 C -0.08 -0.64 10.18 -39.28 -0.40 -1.04 16 9 C -0.19 -1.59 10.11 -39.44 -0.40 -1.99 16 10 C 0.10 1.07 11.18 -17.55 -0.20 0.87 16 11 N -0.48 -6.25 9.88 -9.47 -0.09 -6.35 16 12 N -0.67 -14.03 6.08 -101.21 -0.62 -14.64 16 13 C 0.16 3.93 3.72 -4.97 -0.02 3.91 16 14 C -0.51 -14.95 9.87 -34.44 -0.34 -15.29 16 15 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -28.20 13.96 55.43 0.77 -27.42 16 18 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 21 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 22 H 0.05 0.66 6.43 -51.93 -0.33 0.33 16 23 H 0.06 1.02 6.40 -51.93 -0.33 0.68 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.03 6.40 -51.93 -0.33 0.70 16 27 H 0.05 0.66 6.43 -51.93 -0.33 0.33 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.33 7.95 -51.93 -0.41 0.92 16 30 H 0.09 1.03 6.43 -51.93 -0.33 0.69 16 31 H 0.08 0.81 6.16 -51.93 -0.32 0.50 16 32 H 0.13 1.03 7.95 -52.49 -0.42 0.62 16 33 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.33 6.89 8.71 -39.29 -0.34 6.55 16 37 H 0.03 0.75 5.36 -51.93 -0.28 0.47 16 38 H -0.02 -0.42 5.73 -51.93 -0.30 -0.72 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 309.28 15.07 4.66 4.66 Total: -1.00 -32.36 309.28 -7.91 -40.27 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.86 Total: 4.13 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -2.11 Total: -17.89 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.06 Total: -48.41 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.36 -7.91 -40.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238102212.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.660 kcal (2) G-P(sol) polarization free energy of solvation -32.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds