Wall clock time and date at job start Mon Mar 30 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47599 * 2 1 4 4 C 1.53007 * 109.47028 * 120.00135 * 2 1 3 5 5 C 1.52999 * 109.46897 * 299.99907 * 4 2 1 6 6 C 1.50706 * 109.46818 * 179.97438 * 5 4 2 7 7 C 1.38227 * 119.61686 * 125.02645 * 6 5 4 8 8 C 1.38627 * 119.15663 * 179.70253 * 7 6 5 9 9 C 1.38669 * 118.42388 * 0.51169 * 8 7 6 10 10 C 1.38186 * 119.16143 * 359.50231 * 9 8 7 11 11 N 1.31856 * 119.61480 * 304.99563 * 6 5 4 12 12 N 1.46904 * 109.47394 * 239.99652 * 2 1 3 13 13 C 1.46906 * 110.99458 * 60.00093 * 12 2 1 14 14 C 1.50701 * 109.47024 * 179.97438 * 13 12 2 15 15 H 1.08004 * 119.99855 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00135 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00068 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99895 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47092 * 89.99892 * 18 16 14 20 20 H 1.48502 * 109.46781 * 210.00249 * 18 16 14 21 21 H 1.48508 * 109.46825 * 329.99765 * 18 16 14 22 22 H 1.08996 * 109.47083 * 300.00444 * 1 2 3 23 23 H 1.08998 * 109.46598 * 59.99985 * 1 2 3 24 24 H 1.08994 * 109.47268 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47294 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.47106 * 300.00228 * 3 2 1 27 27 H 1.09006 * 109.46811 * 59.99829 * 3 2 1 28 28 H 1.08994 * 109.47135 * 179.97438 * 4 2 1 29 29 H 1.09003 * 109.46945 * 59.99926 * 4 2 1 30 30 H 1.08998 * 109.47200 * 60.00145 * 5 4 2 31 31 H 1.08994 * 109.47201 * 299.99925 * 5 4 2 32 32 H 1.07998 * 120.41947 * 359.94797 * 7 6 5 33 33 H 1.08008 * 120.78691 * 180.26734 * 8 7 6 34 34 H 1.08002 * 120.42244 * 179.78749 * 9 8 7 35 35 H 1.07996 * 119.61757 * 180.25243 * 10 9 8 36 36 H 1.00902 * 111.00211 * 183.95707 * 12 2 1 37 37 H 1.08996 * 109.47404 * 300.00239 * 13 12 2 38 38 H 1.09004 * 109.46422 * 60.00205 * 13 12 2 39 39 H 0.96995 * 120.00259 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5300 0.0000 2.4985 6 6 2.0318 -0.7109 3.7290 7 6 2.7379 -0.0054 4.6852 8 6 3.1897 -0.6674 5.8163 9 6 2.9225 -2.0226 5.9388 10 6 2.2108 -2.6615 4.9414 11 7 1.7916 -1.9984 3.8812 12 7 2.0197 -0.6926 -1.1994 13 6 1.5487 -0.0264 -2.4211 14 6 2.0703 -0.7630 -3.6279 15 1 2.6895 -1.6387 -3.5001 16 6 1.7572 -0.3190 -4.8951 17 7 2.2120 -0.9621 -5.9482 18 14 0.6869 1.1960 -5.1161 19 1 1.5468 2.4053 -5.1741 20 1 -0.0853 1.0765 -6.3789 21 1 -0.2516 1.3103 -3.9708 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 3.1301 1.4423 0.0005 26 1 1.6768 1.9562 -0.8899 27 1 1.6767 1.9562 0.8900 28 1 3.1299 -0.7217 1.2491 29 1 1.6766 -1.7490 1.2492 30 1 0.4400 0.0000 2.4985 31 1 1.8933 1.0276 2.4985 32 1 2.9317 1.0490 4.5547 33 1 3.7402 -0.1410 6.5821 34 1 3.2623 -2.5709 6.8050 35 1 1.9950 -3.7158 5.0312 36 1 3.0263 -0.7627 -1.1909 37 1 0.4589 -0.0265 -2.4379 38 1 1.9123 1.0011 -2.4377 39 1 1.9914 -0.6500 -6.8397 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238102212.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:13 Heat of formation + Delta-G solvation = 2.388205 kcal Electronic energy + Delta-G solvation = -17697.946355 eV Core-core repulsion = 15025.058569 eV Total energy + Delta-G solvation = -2672.887787 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.11434 -39.43486 -35.53772 -34.32717 -33.22359 -32.25231 -29.54990 -28.66991 -28.14473 -25.81401 -24.33299 -23.36963 -22.17443 -19.83400 -18.92105 -17.75131 -17.12427 -16.82780 -16.41169 -15.86724 -15.65588 -15.56159 -15.08740 -14.77880 -14.45642 -14.10586 -13.91854 -13.80830 -13.57614 -13.08235 -12.95151 -12.79560 -12.48562 -12.36642 -12.13512 -12.02798 -11.73696 -11.55781 -11.46019 -11.25993 -10.80015 -10.73649 -10.23714 -9.80319 -9.03244 -8.29680 -6.33076 0.24254 0.44296 1.33065 1.35943 1.47349 2.34118 2.90839 3.04468 3.42074 3.48481 3.81026 4.01450 4.08439 4.14019 4.26317 4.31438 4.37580 4.48456 4.59387 4.66376 4.76377 4.78773 4.86237 4.92706 4.94805 4.96265 5.11099 5.15161 5.20360 5.28418 5.32619 5.33985 5.44434 5.55744 5.63421 5.88308 6.03603 6.62659 6.70913 6.83442 7.16781 7.31610 8.87564 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.047826 B = 0.004039 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.318777 B = 6931.295070 C = 7158.800380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.102 3.898 3 C -0.178 4.178 4 C -0.079 4.079 5 C -0.065 4.065 6 C 0.113 3.887 7 C -0.178 4.178 8 C -0.078 4.078 9 C -0.180 4.180 10 C 0.081 3.919 11 N -0.516 5.516 12 N -0.684 5.684 13 C 0.177 3.823 14 C -0.528 4.528 15 H 0.032 0.968 16 C 0.006 3.994 17 N -0.950 5.950 18 Si 0.951 3.049 19 H -0.265 1.265 20 H -0.281 1.281 21 H -0.249 1.249 22 H 0.084 0.916 23 H 0.040 0.960 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.155 0.845 33 H 0.163 0.837 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.331 0.669 37 H 0.027 0.973 38 H -0.009 1.009 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.345 5.565 26.554 27.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.012 3.988 3 C -0.237 4.237 4 C -0.117 4.117 5 C -0.103 4.103 6 C -0.024 4.024 7 C -0.197 4.197 8 C -0.104 4.104 9 C -0.200 4.200 10 C -0.076 4.076 11 N -0.226 5.226 12 N -0.314 5.314 13 C 0.048 3.952 14 C -0.567 4.567 15 H 0.051 0.949 16 C -0.191 4.191 17 N -0.591 5.591 18 Si 0.774 3.226 19 H -0.190 1.190 20 H -0.206 1.206 21 H -0.173 1.173 22 H 0.102 0.898 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.106 0.894 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.119 0.881 32 H 0.172 0.828 33 H 0.181 0.819 34 H 0.179 0.821 35 H 0.185 0.815 36 H 0.149 0.851 37 H 0.045 0.955 38 H 0.008 0.992 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.331 4.646 25.720 26.171 hybrid contribution 0.829 1.192 -0.293 1.481 sum -0.502 5.838 25.428 26.094 Atomic orbital electron populations 1.21909 0.94207 1.01683 1.01654 1.21072 0.95633 0.91943 0.90193 1.22569 1.01116 0.97499 1.02526 1.21264 0.99476 0.99242 0.91766 1.20690 1.01703 0.98775 0.89151 1.21523 0.94661 0.90036 0.96222 1.22295 0.99746 1.02568 0.95121 1.22008 0.96364 0.94682 0.97297 1.22464 1.00232 0.96049 1.01243 1.23177 0.94145 1.01052 0.89235 1.67467 1.21243 1.09771 1.24159 1.60549 1.15501 1.53876 1.01455 1.19766 0.95704 0.91989 0.87723 1.21432 1.31531 1.12585 0.91103 0.94920 1.25903 0.97330 1.00586 0.95324 1.70061 1.47598 1.42590 0.98830 0.85657 0.79466 0.79142 0.78331 1.18955 1.20643 1.17286 0.89753 0.94102 0.93367 0.92811 0.93907 0.89415 0.93086 0.92556 0.89593 0.88115 0.82778 0.81941 0.82137 0.81531 0.85132 0.95498 0.99191 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.29 7.89 71.98 0.57 -3.73 16 2 C 0.10 3.32 0.74 3.53 0.00 3.32 16 3 C -0.18 -5.03 7.88 71.98 0.57 -4.47 16 4 C -0.08 -2.26 4.39 30.60 0.13 -2.12 16 5 C -0.07 -1.43 4.91 29.85 0.15 -1.28 16 6 C 0.11 2.55 6.18 42.55 0.26 2.82 16 7 C -0.18 -3.01 9.71 22.36 0.22 -2.79 16 8 C -0.08 -1.07 10.18 22.47 0.23 -0.84 16 9 C -0.18 -2.60 10.11 22.36 0.23 -2.37 16 10 C 0.08 1.59 11.18 84.67 0.95 2.54 16 11 N -0.52 -13.31 9.88 -183.88 -1.82 -15.13 16 12 N -0.68 -29.15 6.08 -474.12 -2.88 -32.03 16 13 C 0.18 8.67 3.72 85.56 0.32 8.99 16 14 C -0.53 -31.78 9.87 25.60 0.25 -31.52 16 15 H 0.03 2.19 8.06 -2.91 -0.02 2.16 16 16 C 0.01 0.34 5.47 84.66 0.46 0.80 16 17 N -0.95 -61.01 13.96 21.45 0.30 -60.72 16 18 Si 0.95 45.11 27.47 68.60 1.88 46.99 16 19 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 22 H 0.08 2.03 6.43 -2.39 -0.02 2.01 16 23 H 0.04 1.40 6.40 -2.39 -0.02 1.38 16 24 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.04 1.36 6.40 -2.39 -0.02 1.35 16 27 H 0.09 1.85 6.43 -2.38 -0.02 1.84 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 1.88 7.95 -2.39 -0.02 1.87 16 30 H 0.09 1.86 6.43 -2.39 -0.02 1.84 16 31 H 0.10 1.72 6.16 -2.39 -0.01 1.70 16 32 H 0.15 1.82 7.95 -2.91 -0.02 1.80 16 33 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 34 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 35 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 36 H 0.33 14.12 8.71 -89.69 -0.78 13.34 16 37 H 0.03 1.35 5.36 -2.39 -0.01 1.33 16 38 H -0.01 -0.45 5.73 -2.38 -0.01 -0.46 16 39 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -72.78 309.28 2.02 -70.77 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.20 Total: 20.78 kcal Atomic # 6 Polarization: -34.99 SS G_CDS: 4.33 Total: -30.66 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -4.40 Total: -107.88 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 46.99 kcal Total: -72.78 2.02 -70.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238102212.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.154 kcal (2) G-P(sol) polarization free energy of solvation -72.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds