Wall clock time and date at job start Mon Mar 30 2020 06:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47394 * 2 1 4 4 C 1.53001 * 109.47137 * 240.00084 * 2 1 3 5 5 C 1.50701 * 109.47531 * 185.00110 * 4 2 1 6 6 N 1.30422 * 125.24877 * 90.01961 * 5 4 2 7 7 C 1.36261 * 109.19047 * 179.97438 * 6 5 4 8 8 C 1.41225 * 126.56327 * 180.02562 * 7 6 5 9 9 H 1.08003 * 119.99795 * 174.28675 * 8 7 6 10 10 C 1.39714 * 120.00325 * 354.27755 * 8 7 6 11 11 N 1.31022 * 119.99583 * 6.00340 * 10 8 7 12 12 Si 1.86793 * 120.00427 * 186.00519 * 10 8 7 13 13 H 1.48496 * 109.47438 * 94.98037 * 12 10 8 14 14 H 1.48507 * 109.47174 * 214.98717 * 12 10 8 15 15 H 1.48501 * 109.47060 * 334.98023 * 12 10 8 16 16 C 1.38243 * 106.86944 * 359.97438 * 7 6 5 17 17 N 1.35461 * 125.25004 * 269.72041 * 5 4 2 18 18 C 1.46565 * 128.12329 * 0.83799 * 17 5 4 19 19 C 1.53264 * 108.79590 * 162.14902 * 18 17 5 20 20 C 1.53129 * 109.70639 * 50.59370 * 19 18 17 21 21 C 1.50615 * 128.69061 * 180.02562 * 16 7 6 22 22 H 1.09001 * 109.46807 * 59.99714 * 1 2 3 23 23 H 1.08999 * 109.47125 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46769 * 299.99900 * 1 2 3 25 25 H 1.09005 * 109.47302 * 120.00274 * 2 1 3 26 26 H 1.08997 * 109.46948 * 299.99774 * 3 2 1 27 27 H 1.08998 * 109.47081 * 60.00290 * 3 2 1 28 28 H 1.08998 * 109.47108 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.47199 * 305.00031 * 4 2 1 30 30 H 1.09002 * 109.47182 * 65.00219 * 4 2 1 31 31 H 0.97004 * 119.99864 * 179.97438 * 11 10 8 32 32 H 1.08998 * 109.74040 * 42.24724 * 18 17 5 33 33 H 1.09003 * 109.51177 * 281.90471 * 18 17 5 34 34 H 1.09009 * 109.43111 * 290.52562 * 19 18 17 35 35 H 1.08994 * 109.43333 * 170.66875 * 19 18 17 36 36 H 1.09000 * 109.51284 * 170.40592 * 20 19 18 37 37 H 1.08994 * 109.51486 * 50.25368 * 20 19 18 38 38 H 1.08997 * 109.74126 * 284.06124 * 21 16 7 39 39 H 1.09001 * 109.74468 * 44.77905 * 21 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.8295 -1.1890 6 7 4.2045 -1.8181 -0.6555 7 6 5.5405 -1.5816 -0.7818 8 6 6.5885 -2.4148 -0.3323 9 1 7.6131 -2.1692 -0.5695 10 6 6.2998 -3.5566 0.4194 11 7 5.0550 -3.9194 0.6078 12 14 7.6885 -4.5659 1.1557 13 1 7.9246 -4.1349 2.5569 14 1 7.3195 -6.0043 1.1356 15 1 8.9253 -4.3611 0.3597 16 6 5.6736 -0.3706 -1.4351 17 7 4.4120 0.0823 -1.6856 18 6 4.1096 1.3491 -2.3577 19 6 5.3636 2.2301 -2.3384 20 6 6.5634 1.4319 -2.8563 21 6 6.9344 0.3547 -1.8259 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6054 -1.7198 -1.2952 30 1 1.7517 -0.1583 -2.1370 31 1 4.8546 -4.7123 1.1293 32 1 3.2978 1.8573 -1.8373 33 1 3.8165 1.1532 -3.3892 34 1 5.5601 2.5589 -1.3178 35 1 5.2051 3.1006 -2.9749 36 1 7.4106 2.1019 -3.0027 37 1 6.3045 0.9589 -3.8036 38 1 7.3786 0.8210 -0.9465 39 1 7.6414 -0.3475 -2.2678 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258551560.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:57 Heat of formation + Delta-G solvation = 27.747017 kcal Electronic energy + Delta-G solvation = -18865.712622 eV Core-core repulsion = 16193.924476 eV Total energy + Delta-G solvation = -2671.788146 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.44413 -36.02635 -35.54427 -33.11044 -31.38316 -29.33619 -28.29624 -26.95832 -26.58136 -23.75068 -23.03263 -20.66612 -20.19020 -18.90467 -17.62789 -16.83634 -15.16488 -15.10239 -14.52863 -14.38174 -13.74817 -13.46515 -13.27051 -13.10458 -12.82521 -12.69627 -12.42641 -11.94194 -11.75320 -11.51015 -11.22593 -11.02716 -10.96573 -10.54745 -10.52122 -10.42784 -10.31660 -10.29139 -10.07566 -9.96973 -9.72369 -9.00928 -7.87332 -7.72508 -6.66417 -6.10860 -3.85912 3.19041 3.31139 3.34722 3.58445 4.14609 4.31708 4.68430 5.10415 5.16780 5.23957 5.26863 5.33497 5.37702 5.72577 5.78399 5.80682 5.83244 5.90041 5.93638 5.97709 6.03949 6.06605 6.10160 6.22505 6.26101 6.35662 6.41524 6.48724 6.57559 6.67851 6.74846 6.82519 6.86193 7.39346 7.64068 7.93715 8.16264 8.58020 8.91160 9.25153 9.45395 10.16755 10.83575 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018261 B = 0.008846 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.946586 B = 3164.596348 C = 4449.013419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.016 4.016 5 C 0.169 3.831 6 N -0.454 5.454 7 C 0.205 3.795 8 C -0.452 4.452 9 H 0.073 0.927 10 C 0.076 3.924 11 N -0.773 5.773 12 Si 0.896 3.104 13 H -0.276 1.276 14 H -0.282 1.282 15 H -0.267 1.267 16 C -0.195 4.195 17 N -0.460 5.460 18 C 0.106 3.894 19 C -0.125 4.125 20 C -0.119 4.119 21 C -0.005 4.005 22 H 0.049 0.951 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.264 0.736 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.546 10.167 -3.720 11.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.056 4.056 5 C -0.091 4.091 6 N -0.177 5.177 7 C 0.082 3.918 8 C -0.488 4.488 9 H 0.091 0.909 10 C -0.141 4.141 11 N -0.400 5.400 12 Si 0.722 3.278 13 H -0.202 1.202 14 H -0.208 1.208 15 H -0.191 1.191 16 C -0.303 4.303 17 N -0.152 5.152 18 C -0.018 4.018 19 C -0.163 4.163 20 C -0.156 4.156 21 C -0.044 4.044 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.097 0.903 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.067 9.414 -3.329 11.197 hybrid contribution 0.975 0.248 -0.043 1.007 sum -4.092 9.662 -3.371 11.021 Atomic orbital electron populations 1.21823 0.95621 1.01607 1.00999 1.21093 0.94626 0.95934 0.99415 1.22010 1.01899 0.96210 1.00426 1.19795 0.87949 1.01143 0.96667 1.23036 0.92925 0.89508 1.03639 1.71383 1.04582 1.21126 1.20574 1.17992 0.89738 0.89893 0.94224 1.18418 0.92261 1.06496 1.31588 0.90914 1.25737 0.95523 0.97239 0.95648 1.70118 1.18124 1.21061 1.30665 0.86522 0.82388 0.79114 0.79764 1.20178 1.20790 1.19127 1.20676 0.84327 1.02197 1.23076 1.44487 1.06561 1.16569 1.47592 1.21724 0.98167 0.85079 0.96874 1.21742 0.95098 0.97537 1.01897 1.21631 0.96852 0.97817 0.99346 1.19547 0.93796 0.94762 0.96249 0.93177 0.92587 0.93090 0.90339 0.93314 0.93308 0.91921 0.90011 0.92494 0.92585 0.90335 0.92558 0.91511 0.91533 0.92458 0.92396 0.93216 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.19 37.16 0.34 -1.48 16 2 C -0.09 -1.47 2.91 -90.62 -0.26 -1.74 16 3 C -0.15 -2.19 7.58 37.16 0.28 -1.91 16 4 C -0.02 -0.30 5.03 -27.88 -0.14 -0.44 16 5 C 0.17 3.96 6.38 -155.10 -0.99 2.97 16 6 N -0.45 -12.91 9.56 -8.38 -0.08 -12.99 16 7 C 0.20 5.90 6.67 -84.76 -0.57 5.34 16 8 C -0.45 -13.15 9.23 -37.90 -0.35 -13.50 16 9 H 0.07 2.01 7.85 -52.48 -0.41 1.60 16 10 C 0.08 2.15 5.49 -17.35 -0.10 2.05 16 11 N -0.77 -22.72 11.98 55.54 0.67 -22.06 16 12 Si 0.90 20.70 29.56 -169.99 -5.03 15.67 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 15 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 16 C -0.20 -4.80 6.69 -80.61 -0.54 -5.34 16 17 N -0.46 -10.01 2.74 -108.25 -0.30 -10.31 16 18 C 0.11 1.73 6.00 -3.87 -0.02 1.71 16 19 C -0.12 -1.83 5.91 -26.53 -0.16 -1.99 16 20 C -0.12 -1.89 5.97 -26.35 -0.16 -2.05 16 21 C -0.01 -0.10 6.15 -27.61 -0.17 -0.27 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 26 H 0.05 0.62 7.18 -51.93 -0.37 0.25 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 1.09 5.85 -51.93 -0.30 0.79 16 29 H 0.08 1.54 8.14 -51.92 -0.42 1.12 16 30 H 0.06 0.91 7.92 -51.93 -0.41 0.49 16 31 H 0.26 7.16 8.30 -40.82 -0.34 6.82 16 32 H 0.08 1.15 4.60 -51.93 -0.24 0.91 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.03 8.11 -51.92 -0.42 0.60 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 305.86 15.07 4.61 4.61 Total: -1.00 -32.40 305.86 -9.32 -41.72 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.37 Total: 0.00 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -2.83 Total: -16.65 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.29 Total: -45.35 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.40 -9.32 -41.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258551560.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.464 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds