Wall clock time and date at job start Mon Mar 30 2020 06:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47394 * 2 1 4 4 C 1.53001 * 109.47137 * 240.00084 * 2 1 3 5 5 C 1.50701 * 109.47531 * 185.00110 * 4 2 1 6 6 N 1.30422 * 125.24877 * 90.01961 * 5 4 2 7 7 C 1.36261 * 109.19047 * 179.97438 * 6 5 4 8 8 C 1.41225 * 126.56327 * 180.02562 * 7 6 5 9 9 H 1.08003 * 119.99795 * 174.28675 * 8 7 6 10 10 C 1.39714 * 120.00325 * 354.27755 * 8 7 6 11 11 N 1.31022 * 119.99583 * 6.00340 * 10 8 7 12 12 Si 1.86793 * 120.00427 * 186.00519 * 10 8 7 13 13 H 1.48496 * 109.47438 * 94.98037 * 12 10 8 14 14 H 1.48507 * 109.47174 * 214.98717 * 12 10 8 15 15 H 1.48501 * 109.47060 * 334.98023 * 12 10 8 16 16 C 1.38243 * 106.86944 * 359.97438 * 7 6 5 17 17 N 1.35461 * 125.25004 * 269.72041 * 5 4 2 18 18 C 1.46565 * 128.12329 * 0.83799 * 17 5 4 19 19 C 1.53264 * 108.79590 * 162.14902 * 18 17 5 20 20 C 1.53129 * 109.70639 * 50.59370 * 19 18 17 21 21 C 1.50615 * 128.69061 * 180.02562 * 16 7 6 22 22 H 1.09001 * 109.46807 * 59.99714 * 1 2 3 23 23 H 1.08999 * 109.47125 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46769 * 299.99900 * 1 2 3 25 25 H 1.09005 * 109.47302 * 120.00274 * 2 1 3 26 26 H 1.08997 * 109.46948 * 299.99774 * 3 2 1 27 27 H 1.08998 * 109.47081 * 60.00290 * 3 2 1 28 28 H 1.08998 * 109.47108 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.47199 * 305.00031 * 4 2 1 30 30 H 1.09002 * 109.47182 * 65.00219 * 4 2 1 31 31 H 0.97004 * 119.99864 * 179.97438 * 11 10 8 32 32 H 1.08998 * 109.74040 * 42.24724 * 18 17 5 33 33 H 1.09003 * 109.51177 * 281.90471 * 18 17 5 34 34 H 1.09009 * 109.43111 * 290.52562 * 19 18 17 35 35 H 1.08994 * 109.43333 * 170.66875 * 19 18 17 36 36 H 1.09000 * 109.51284 * 170.40592 * 20 19 18 37 37 H 1.08994 * 109.51486 * 50.25368 * 20 19 18 38 38 H 1.08997 * 109.74126 * 284.06124 * 21 16 7 39 39 H 1.09001 * 109.74468 * 44.77905 * 21 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.8295 -1.1890 6 7 4.2045 -1.8181 -0.6555 7 6 5.5405 -1.5816 -0.7818 8 6 6.5885 -2.4148 -0.3323 9 1 7.6131 -2.1692 -0.5695 10 6 6.2998 -3.5566 0.4194 11 7 5.0550 -3.9194 0.6078 12 14 7.6885 -4.5659 1.1557 13 1 7.9246 -4.1349 2.5569 14 1 7.3195 -6.0043 1.1356 15 1 8.9253 -4.3611 0.3597 16 6 5.6736 -0.3706 -1.4351 17 7 4.4120 0.0823 -1.6856 18 6 4.1096 1.3491 -2.3577 19 6 5.3636 2.2301 -2.3384 20 6 6.5634 1.4319 -2.8563 21 6 6.9344 0.3547 -1.8259 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6054 -1.7198 -1.2952 30 1 1.7517 -0.1583 -2.1370 31 1 4.8546 -4.7123 1.1293 32 1 3.2978 1.8573 -1.8373 33 1 3.8165 1.1532 -3.3892 34 1 5.5601 2.5589 -1.3178 35 1 5.2051 3.1006 -2.9749 36 1 7.4106 2.1019 -3.0027 37 1 6.3045 0.9589 -3.8036 38 1 7.3786 0.8210 -0.9465 39 1 7.6414 -0.3475 -2.2678 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258551560.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:56 Heat of formation + Delta-G solvation = 8.816623 kcal Electronic energy + Delta-G solvation = -18866.533505 eV Core-core repulsion = 16193.924476 eV Total energy + Delta-G solvation = -2672.609030 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.22602 -37.38087 -37.05387 -35.05866 -33.09972 -30.97618 -29.91437 -28.44309 -28.01435 -25.44431 -24.56461 -22.20092 -21.77788 -20.50080 -19.23957 -18.75735 -16.92295 -16.63163 -16.31854 -15.74727 -15.18251 -14.92090 -14.64387 -14.54042 -14.37374 -14.30745 -13.96025 -13.34737 -13.01943 -12.93569 -12.79219 -12.72649 -12.63579 -12.22718 -11.93999 -11.84572 -11.73146 -11.70351 -11.56779 -11.48742 -11.39564 -10.98688 -9.82301 -9.60893 -8.63475 -8.16504 -5.97088 1.34643 1.39221 1.53431 1.76982 2.34614 2.56396 2.70030 3.74148 3.83101 3.87614 3.92868 3.99764 4.10473 4.12139 4.41878 4.44316 4.51046 4.53238 4.62062 4.75771 4.80992 4.86565 4.94703 4.95990 5.04751 5.05927 5.08227 5.12671 5.15553 5.27542 5.39570 5.41369 5.46180 5.51576 5.67631 6.02913 6.22664 6.50395 7.04526 7.24450 7.42375 8.24657 8.80064 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018261 B = 0.008846 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.946586 B = 3164.596348 C = 4449.013419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.013 4.013 5 C 0.162 3.838 6 N -0.512 5.512 7 C 0.143 3.857 8 C -0.489 4.489 9 H 0.070 0.930 10 C 0.023 3.977 11 N -0.819 5.819 12 Si 0.975 3.025 13 H -0.270 1.270 14 H -0.275 1.275 15 H -0.258 1.258 16 C -0.187 4.187 17 N -0.454 5.454 18 C 0.093 3.907 19 C -0.121 4.121 20 C -0.111 4.111 21 C -0.011 4.011 22 H 0.074 0.926 23 H 0.051 0.949 24 H 0.065 0.935 25 H 0.034 0.966 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.031 0.969 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.265 0.735 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.159 13.009 -5.037 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 C -0.199 4.199 4 C -0.052 4.052 5 C -0.099 4.099 6 N -0.236 5.236 7 C 0.019 3.981 8 C -0.525 4.525 9 H 0.088 0.912 10 C -0.190 4.190 11 N -0.448 5.448 12 Si 0.798 3.202 13 H -0.196 1.196 14 H -0.200 1.200 15 H -0.182 1.182 16 C -0.296 4.296 17 N -0.143 5.143 18 C -0.029 4.029 19 C -0.158 4.158 20 C -0.149 4.149 21 C -0.049 4.049 22 H 0.093 0.907 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.053 0.947 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.132 0.868 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.691 12.305 -4.674 14.340 hybrid contribution 1.109 -0.483 0.277 1.241 sum -4.582 11.821 -4.397 13.419 Atomic orbital electron populations 1.21750 0.92401 1.02064 1.02948 1.21024 0.97185 0.96228 0.96280 1.21946 0.99811 0.95339 1.02755 1.19958 0.84555 1.01404 0.99252 1.23811 0.95010 0.88832 1.02212 1.71226 1.05125 1.24226 1.22981 1.18512 0.90333 0.92285 0.96975 1.18728 0.92464 1.07984 1.33293 0.91191 1.26638 0.98317 0.98241 0.95830 1.70276 1.20443 1.21880 1.32173 0.85317 0.78871 0.77279 0.78778 1.19557 1.19999 1.18223 1.21251 0.86896 1.01085 1.20382 1.44758 1.05188 1.17927 1.46464 1.22225 1.00204 0.82922 0.97540 1.21788 0.93249 0.98297 1.02485 1.21597 0.98893 0.96926 0.97438 1.19675 0.91657 0.95809 0.97763 0.90656 0.93006 0.91628 0.94696 0.90209 0.91746 0.95010 0.91433 0.89098 0.92592 0.87991 0.90590 0.92310 0.86841 0.89118 0.92482 0.93153 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 9.19 71.98 0.66 -2.42 16 2 C -0.09 -2.75 2.91 -10.79 -0.03 -2.79 16 3 C -0.14 -3.81 7.58 71.98 0.55 -3.27 16 4 C -0.01 -0.45 5.03 29.85 0.15 -0.30 16 5 C 0.16 7.79 6.38 138.02 0.88 8.67 16 6 N -0.51 -30.81 9.56 -180.42 -1.73 -32.53 16 7 C 0.14 8.69 6.67 39.19 0.26 8.95 16 8 C -0.49 -30.14 9.23 23.36 0.22 -29.93 16 9 H 0.07 4.11 7.85 -2.91 -0.02 4.09 16 10 C 0.02 1.33 5.49 85.17 0.47 1.80 16 11 N -0.82 -51.19 11.98 21.79 0.26 -50.93 16 12 Si 0.98 44.63 29.56 68.60 2.03 46.66 16 13 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 15 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 16 C -0.19 -9.36 6.69 41.83 0.28 -9.08 16 17 N -0.45 -19.52 2.74 -496.38 -1.36 -20.89 16 18 C 0.09 2.72 6.00 86.46 0.52 3.24 16 19 C -0.12 -3.03 5.91 30.73 0.18 -2.85 16 20 C -0.11 -3.18 5.97 30.84 0.18 -3.00 16 21 C -0.01 -0.42 6.15 30.03 0.18 -0.24 16 22 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.08 1.65 7.18 -2.39 -0.02 1.63 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.03 1.04 5.85 -2.39 -0.01 1.03 16 29 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 30 H 0.09 2.63 7.92 -2.39 -0.02 2.61 16 31 H 0.26 15.25 8.30 -92.71 -0.77 14.48 16 32 H 0.10 2.54 4.60 -2.39 -0.01 2.53 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.06 1.60 8.11 -2.38 -0.02 1.58 16 35 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.06 1.66 8.12 -2.39 -0.02 1.65 16 38 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -77.92 305.86 4.72 -73.20 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 1.02 Total: 15.70 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 4.50 Total: -31.21 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -2.83 Total: -104.35 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -77.92 4.72 -73.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258551560.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.021 kcal (2) G-P(sol) polarization free energy of solvation -77.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds