Wall clock time and date at job start Mon Mar 30 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47260 * 2 1 4 4 C 1.53008 * 109.47124 * 119.99697 * 2 1 3 5 5 C 1.50696 * 109.47492 * 239.99899 * 2 1 3 6 6 N 1.30421 * 125.24919 * 233.71043 * 5 2 1 7 7 C 1.36267 * 109.19080 * 179.85872 * 6 5 2 8 8 C 1.41234 * 126.56186 * 180.16819 * 7 6 5 9 9 H 1.07997 * 119.99622 * 180.21705 * 8 7 6 10 10 C 1.39715 * 119.99978 * 0.21787 * 8 7 6 11 11 N 1.31019 * 120.00157 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99448 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47376 * 60.00146 * 12 10 8 14 14 H 1.48500 * 109.46787 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47432 * 299.99538 * 12 10 8 16 16 C 1.38245 * 106.86889 * 0.34910 * 7 6 5 17 17 N 1.35457 * 125.25027 * 54.01265 * 5 2 1 18 18 C 1.46563 * 128.12825 * 0.09218 * 17 5 2 19 19 C 1.53266 * 108.73357 * 162.58402 * 18 17 5 20 20 C 1.53130 * 109.70573 * 50.80169 * 19 18 17 21 21 C 1.50606 * 128.68987 * 179.89655 * 16 7 6 22 22 H 1.08999 * 109.47496 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.46927 * 59.99980 * 1 2 3 24 24 H 1.08995 * 109.47167 * 300.00479 * 1 2 3 25 25 H 1.08999 * 109.47344 * 65.41725 * 3 2 1 26 26 H 1.09002 * 109.47001 * 185.41365 * 3 2 1 27 27 H 1.09000 * 109.46963 * 305.41628 * 3 2 1 28 28 H 1.08999 * 109.46606 * 59.99858 * 4 2 1 29 29 H 1.08998 * 109.47177 * 180.02562 * 4 2 1 30 30 H 1.09003 * 109.46826 * 300.00264 * 4 2 1 31 31 H 0.96999 * 119.99548 * 180.02562 * 11 10 8 32 32 H 1.08998 * 109.59661 * 282.37855 * 18 17 5 33 33 H 1.08998 * 109.59508 * 42.83200 * 18 17 5 34 34 H 1.09006 * 109.44335 * 290.72827 * 19 18 17 35 35 H 1.09001 * 109.43458 * 170.87489 * 19 18 17 36 36 H 1.08999 * 109.51075 * 170.39827 * 20 19 18 37 37 H 1.08998 * 109.51130 * 50.24996 * 20 19 18 38 38 H 1.09005 * 109.74476 * 283.96367 * 21 16 7 39 39 H 1.08995 * 109.74664 * 44.67848 * 21 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0324 -0.7104 -1.2304 6 7 2.8776 -1.7036 -1.2337 7 6 3.1015 -2.0970 -2.5190 8 6 3.9508 -3.1428 -2.9429 9 1 4.0523 -3.3629 -3.9953 10 6 4.6595 -3.8926 -2.0008 11 7 4.5367 -3.6252 -0.7241 12 14 5.7833 -5.2753 -2.5617 13 1 6.8385 -4.7259 -3.4504 14 1 6.4154 -5.9106 -1.3776 15 1 4.9899 -6.2883 -3.3029 16 6 2.3413 -1.2738 -3.3287 17 7 1.6802 -0.4121 -2.5039 18 6 0.7638 0.6332 -2.9682 19 6 1.0098 0.8758 -4.4614 20 6 0.9832 -0.4584 -5.2125 21 6 2.2230 -1.2788 -4.8301 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 0.5139 0.8899 25 1 1.7581 1.9276 0.9345 26 1 3.1257 1.4440 -0.0970 27 1 1.5996 1.9836 -0.8375 28 1 1.6766 -1.7489 1.2493 29 1 3.1300 -0.7208 1.2496 30 1 1.6766 -0.2073 2.1393 31 1 5.0290 -4.1456 -0.0701 32 1 -0.2661 0.3111 -2.8147 33 1 0.9478 1.5533 -2.4136 34 1 1.9825 1.3487 -4.5968 35 1 0.2317 1.5295 -4.8556 36 1 0.9872 -0.2717 -6.2864 37 1 0.0834 -1.0107 -4.9416 38 1 3.1126 -0.8289 -5.2710 39 1 2.1117 -2.3025 -5.1873 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258577476.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:59 Heat of formation + Delta-G solvation = 31.776551 kcal Electronic energy + Delta-G solvation = -19130.020240 eV Core-core repulsion = 16458.406827 eV Total energy + Delta-G solvation = -2671.613412 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.51873 -36.21869 -35.42274 -32.98638 -31.34579 -29.01996 -27.62145 -26.89937 -26.44065 -24.35547 -23.25800 -21.44581 -20.07958 -18.47376 -17.61078 -16.61271 -15.05798 -14.88978 -14.47492 -13.81247 -13.64524 -13.60021 -13.47564 -13.29963 -12.77990 -12.56083 -12.11765 -11.85636 -11.54506 -11.22405 -11.09991 -10.98870 -10.95947 -10.86212 -10.49837 -10.46358 -10.35376 -10.26669 -9.98152 -9.88160 -9.73179 -9.01348 -7.84370 -7.71648 -6.66626 -6.09824 -3.85276 3.21229 3.30139 3.33096 3.60338 4.13911 4.31764 4.69995 5.09044 5.13976 5.18471 5.26386 5.45483 5.52578 5.72615 5.78169 5.84371 5.88674 5.95365 5.98589 6.07465 6.10856 6.16669 6.25889 6.32656 6.37435 6.46393 6.50283 6.55558 6.61995 6.76722 6.86103 6.87258 7.15298 7.40374 7.64385 7.94449 8.17786 8.57898 8.91453 9.25638 9.45999 10.17927 10.84133 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019442 B = 0.009496 C = 0.006733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.804232 B = 2947.920143 C = 4157.908271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.025 3.975 3 C -0.138 4.138 4 C -0.115 4.115 5 C 0.177 3.823 6 N -0.448 5.448 7 C 0.204 3.796 8 C -0.451 4.451 9 H 0.071 0.929 10 C 0.077 3.923 11 N -0.772 5.772 12 Si 0.896 3.104 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.271 1.271 16 C -0.197 4.197 17 N -0.460 5.460 18 C 0.115 3.885 19 C -0.126 4.126 20 C -0.118 4.118 21 C -0.005 4.005 22 H 0.056 0.944 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.039 0.961 31 H 0.264 0.736 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.092 8.351 -1.473 11.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.023 3.977 3 C -0.196 4.196 4 C -0.173 4.173 5 C -0.083 4.083 6 N -0.171 5.171 7 C 0.081 3.919 8 C -0.487 4.487 9 H 0.090 0.910 10 C -0.141 4.141 11 N -0.399 5.399 12 Si 0.722 3.278 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.196 1.196 16 C -0.304 4.304 17 N -0.152 5.152 18 C -0.010 4.010 19 C -0.164 4.164 20 C -0.156 4.156 21 C -0.043 4.043 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.735 8.021 -0.598 10.491 hybrid contribution 0.129 -0.267 -1.029 1.071 sum -6.606 7.754 -1.626 10.316 Atomic orbital electron populations 1.21976 0.95119 1.01948 1.00966 1.18723 0.93928 0.93554 0.91504 1.21923 1.01729 0.95325 1.00639 1.21523 1.02428 0.99962 0.93406 1.22914 1.01634 0.99835 0.83886 1.71379 1.14026 1.09697 1.21978 1.17997 0.94100 0.93646 0.86167 1.18364 1.23517 1.13364 0.93413 0.91036 1.25725 0.96378 0.97290 0.94722 1.70093 1.34261 1.34868 1.00676 0.86608 0.80800 0.81829 0.78560 1.19643 1.20882 1.19636 1.20665 1.13286 1.04862 0.91612 1.44408 1.36949 1.27433 1.06398 1.21640 0.93161 0.91032 0.95123 1.21769 1.02028 0.98283 0.94328 1.21607 0.99683 0.95723 0.98591 1.19522 0.95279 0.98803 0.90725 0.92511 0.93067 0.92694 0.92694 0.92313 0.93335 0.92090 0.91482 0.94165 0.92543 0.92235 0.91179 0.91500 0.91520 0.92449 0.92406 0.93321 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.31 37.16 0.31 -1.90 16 2 C 0.02 0.46 0.80 -155.66 -0.12 0.34 16 3 C -0.14 -2.19 8.37 37.16 0.31 -1.88 16 4 C -0.12 -2.16 7.94 37.16 0.29 -1.87 16 5 C 0.18 4.15 6.25 -155.10 -0.97 3.18 16 6 N -0.45 -12.58 8.78 -8.38 -0.07 -12.65 16 7 C 0.20 5.86 6.68 -84.76 -0.57 5.29 16 8 C -0.45 -13.06 9.23 -37.89 -0.35 -13.41 16 9 H 0.07 1.97 7.84 -52.49 -0.41 1.56 16 10 C 0.08 2.15 5.49 -17.35 -0.10 2.05 16 11 N -0.77 -22.45 11.95 55.54 0.66 -21.79 16 12 Si 0.90 20.64 29.56 -169.99 -5.02 15.62 16 13 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 C -0.20 -4.85 6.69 -80.62 -0.54 -5.39 16 17 N -0.46 -10.07 3.14 -108.25 -0.34 -10.41 16 18 C 0.11 1.90 5.14 -3.87 -0.02 1.88 16 19 C -0.13 -1.87 5.91 -26.53 -0.16 -2.03 16 20 C -0.12 -1.89 5.97 -26.40 -0.16 -2.05 16 21 C 0.00 -0.10 6.15 -27.66 -0.17 -0.27 16 22 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.05 0.74 5.41 -51.92 -0.28 0.46 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.71 5.75 -51.93 -0.30 0.41 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.07 1.40 8.12 -51.93 -0.42 0.98 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.26 7.13 8.30 -40.82 -0.34 6.79 16 32 H 0.06 0.92 7.19 -51.93 -0.37 0.55 16 33 H 0.07 1.05 5.70 -51.93 -0.30 0.75 16 34 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 303.62 15.07 4.58 4.58 Total: -1.00 -32.04 303.62 -8.72 -40.75 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.29 Total: -0.03 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -2.23 Total: -16.05 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.25 Total: -44.86 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.04 -8.72 -40.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258577476.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.531 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds