Wall clock time and date at job start Mon Mar 30 2020 06:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47260 * 2 1 4 4 C 1.53008 * 109.47124 * 119.99697 * 2 1 3 5 5 C 1.50696 * 109.47492 * 239.99899 * 2 1 3 6 6 N 1.30421 * 125.24919 * 233.71043 * 5 2 1 7 7 C 1.36267 * 109.19080 * 179.85872 * 6 5 2 8 8 C 1.41234 * 126.56186 * 180.16819 * 7 6 5 9 9 H 1.07997 * 119.99622 * 180.21705 * 8 7 6 10 10 C 1.39715 * 119.99978 * 0.21787 * 8 7 6 11 11 N 1.31019 * 120.00157 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99448 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47376 * 60.00146 * 12 10 8 14 14 H 1.48500 * 109.46787 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47432 * 299.99538 * 12 10 8 16 16 C 1.38245 * 106.86889 * 0.34910 * 7 6 5 17 17 N 1.35457 * 125.25027 * 54.01265 * 5 2 1 18 18 C 1.46563 * 128.12825 * 0.09218 * 17 5 2 19 19 C 1.53266 * 108.73357 * 162.58402 * 18 17 5 20 20 C 1.53130 * 109.70573 * 50.80169 * 19 18 17 21 21 C 1.50606 * 128.68987 * 179.89655 * 16 7 6 22 22 H 1.08999 * 109.47496 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.46927 * 59.99980 * 1 2 3 24 24 H 1.08995 * 109.47167 * 300.00479 * 1 2 3 25 25 H 1.08999 * 109.47344 * 65.41725 * 3 2 1 26 26 H 1.09002 * 109.47001 * 185.41365 * 3 2 1 27 27 H 1.09000 * 109.46963 * 305.41628 * 3 2 1 28 28 H 1.08999 * 109.46606 * 59.99858 * 4 2 1 29 29 H 1.08998 * 109.47177 * 180.02562 * 4 2 1 30 30 H 1.09003 * 109.46826 * 300.00264 * 4 2 1 31 31 H 0.96999 * 119.99548 * 180.02562 * 11 10 8 32 32 H 1.08998 * 109.59661 * 282.37855 * 18 17 5 33 33 H 1.08998 * 109.59508 * 42.83200 * 18 17 5 34 34 H 1.09006 * 109.44335 * 290.72827 * 19 18 17 35 35 H 1.09001 * 109.43458 * 170.87489 * 19 18 17 36 36 H 1.08999 * 109.51075 * 170.39827 * 20 19 18 37 37 H 1.08998 * 109.51130 * 50.24996 * 20 19 18 38 38 H 1.09005 * 109.74476 * 283.96367 * 21 16 7 39 39 H 1.08995 * 109.74664 * 44.67848 * 21 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0324 -0.7104 -1.2304 6 7 2.8776 -1.7036 -1.2337 7 6 3.1015 -2.0970 -2.5190 8 6 3.9508 -3.1428 -2.9429 9 1 4.0523 -3.3629 -3.9953 10 6 4.6595 -3.8926 -2.0008 11 7 4.5367 -3.6252 -0.7241 12 14 5.7833 -5.2753 -2.5617 13 1 6.8385 -4.7259 -3.4504 14 1 6.4154 -5.9106 -1.3776 15 1 4.9899 -6.2883 -3.3029 16 6 2.3413 -1.2738 -3.3287 17 7 1.6802 -0.4121 -2.5039 18 6 0.7638 0.6332 -2.9682 19 6 1.0098 0.8758 -4.4614 20 6 0.9832 -0.4584 -5.2125 21 6 2.2230 -1.2788 -4.8301 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 0.5139 0.8899 25 1 1.7581 1.9276 0.9345 26 1 3.1257 1.4440 -0.0970 27 1 1.5996 1.9836 -0.8375 28 1 1.6766 -1.7489 1.2493 29 1 3.1300 -0.7208 1.2496 30 1 1.6766 -0.2073 2.1393 31 1 5.0290 -4.1456 -0.0701 32 1 -0.2661 0.3111 -2.8147 33 1 0.9478 1.5533 -2.4136 34 1 1.9825 1.3487 -4.5968 35 1 0.2317 1.5295 -4.8556 36 1 0.9872 -0.2717 -6.2864 37 1 0.0834 -1.0107 -4.9416 38 1 3.1126 -0.8289 -5.2710 39 1 2.1117 -2.3025 -5.1873 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258577476.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:58 Heat of formation + Delta-G solvation = 12.799586 kcal Electronic energy + Delta-G solvation = -19130.843143 eV Core-core repulsion = 16458.406827 eV Total energy + Delta-G solvation = -2672.436315 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.27877 -37.65713 -36.98347 -34.93697 -33.03904 -30.66769 -29.47146 -28.14212 -27.92058 -26.20970 -24.74697 -22.94384 -21.88412 -20.03994 -19.22880 -18.56640 -16.80290 -16.48490 -16.19283 -15.27391 -15.17628 -14.98246 -14.94594 -14.66517 -14.43474 -14.27107 -13.70283 -13.05956 -12.94108 -12.90845 -12.80863 -12.65210 -12.54254 -12.39855 -12.06505 -11.97602 -11.82272 -11.75217 -11.65603 -11.49072 -11.26664 -10.98931 -9.76548 -9.58867 -8.62497 -8.14340 -5.95353 1.36803 1.39109 1.50917 1.79738 2.34884 2.56567 2.73250 3.72470 3.77397 3.82874 3.88915 3.97137 4.14524 4.18811 4.39702 4.46371 4.48514 4.53221 4.74352 4.79431 4.86004 4.90963 4.94847 5.02741 5.03617 5.04750 5.10797 5.13683 5.13830 5.22647 5.40268 5.43481 5.49526 5.58668 5.70645 6.04724 6.25198 6.51474 7.05867 7.25806 7.44452 8.27524 8.81137 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019442 B = 0.009496 C = 0.006733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.804232 B = 2947.920143 C = 4157.908271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.020 3.980 3 C -0.130 4.130 4 C -0.108 4.108 5 C 0.170 3.830 6 N -0.502 5.502 7 C 0.141 3.859 8 C -0.488 4.488 9 H 0.068 0.932 10 C 0.024 3.976 11 N -0.816 5.816 12 Si 0.973 3.027 13 H -0.265 1.265 14 H -0.276 1.276 15 H -0.264 1.264 16 C -0.191 4.191 17 N -0.457 5.457 18 C 0.102 3.898 19 C -0.122 4.122 20 C -0.110 4.110 21 C -0.010 4.010 22 H 0.034 0.966 23 H 0.066 0.934 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.030 0.970 27 H 0.065 0.935 28 H 0.029 0.971 29 H 0.031 0.969 30 H 0.083 0.917 31 H 0.264 0.736 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.138 10.716 -2.307 14.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.018 3.982 3 C -0.187 4.187 4 C -0.165 4.165 5 C -0.092 4.092 6 N -0.224 5.224 7 C 0.017 3.983 8 C -0.524 4.524 9 H 0.087 0.913 10 C -0.189 4.189 11 N -0.444 5.444 12 Si 0.796 3.204 13 H -0.189 1.189 14 H -0.201 1.201 15 H -0.189 1.189 16 C -0.300 4.300 17 N -0.147 5.147 18 C -0.020 4.020 19 C -0.159 4.159 20 C -0.148 4.148 21 C -0.048 4.048 22 H 0.054 0.946 23 H 0.085 0.915 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.050 0.950 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.077 0.923 35 H 0.132 0.868 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.815 10.423 -1.452 13.728 hybrid contribution 0.657 -0.875 -0.797 1.353 sum -8.158 9.548 -2.249 12.758 Atomic orbital electron populations 1.21915 0.92267 1.01401 1.03554 1.19004 0.96104 0.94440 0.88659 1.21857 0.99942 0.93596 1.03349 1.21443 1.00160 0.99026 0.95910 1.23823 1.00349 0.98903 0.86090 1.71238 1.16477 1.12178 1.22537 1.18536 0.96411 0.95643 0.87690 1.18670 1.25190 1.14943 0.93565 0.91346 1.26601 0.97845 0.99849 0.94639 1.70258 1.35838 1.36462 1.01833 0.85421 0.78524 0.78279 0.78200 1.18931 1.20084 1.18906 1.21237 1.11424 1.03679 0.93668 1.44696 1.36706 1.27688 1.05561 1.22132 0.92780 0.90224 0.96869 1.21814 1.03331 0.98076 0.92727 1.21571 0.96770 0.95583 1.00882 1.19639 0.97917 0.99360 0.87921 0.94649 0.91539 0.89007 0.89045 0.95048 0.91651 0.95147 0.94935 0.89825 0.92642 0.90302 0.88842 0.92323 0.86810 0.89134 0.92514 0.93313 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.74 8.31 71.98 0.60 -3.15 16 2 C 0.02 0.71 0.80 -52.93 -0.04 0.67 16 3 C -0.13 -3.75 8.37 71.98 0.60 -3.15 16 4 C -0.11 -4.08 7.94 71.98 0.57 -3.50 16 5 C 0.17 8.08 6.25 138.02 0.86 8.95 16 6 N -0.50 -29.75 8.78 -180.42 -1.58 -31.33 16 7 C 0.14 8.55 6.68 39.19 0.26 8.81 16 8 C -0.49 -29.99 9.23 23.36 0.22 -29.78 16 9 H 0.07 4.01 7.84 -2.91 -0.02 3.99 16 10 C 0.02 1.40 5.49 85.17 0.47 1.87 16 11 N -0.82 -50.55 11.95 21.79 0.26 -50.29 16 12 Si 0.97 44.57 29.56 68.60 2.03 46.60 16 13 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 14 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 15 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 16 C -0.19 -9.59 6.69 41.83 0.28 -9.31 16 17 N -0.46 -19.72 3.14 -496.40 -1.56 -21.28 16 18 C 0.10 2.99 5.14 86.46 0.44 3.44 16 19 C -0.12 -3.08 5.91 30.73 0.18 -2.89 16 20 C -0.11 -3.19 5.97 30.81 0.18 -3.00 16 21 C -0.01 -0.40 6.15 29.99 0.18 -0.21 16 22 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.07 1.64 5.41 -2.38 -0.01 1.63 16 24 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.65 5.75 -2.39 -0.01 1.63 16 28 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.03 1.42 8.12 -2.39 -0.02 1.40 16 30 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.26 15.18 8.30 -92.71 -0.77 14.41 16 32 H 0.08 2.08 7.19 -2.39 -0.02 2.06 16 33 H 0.09 2.35 5.70 -2.39 -0.01 2.34 16 34 H 0.06 1.61 8.12 -2.38 -0.02 1.59 16 35 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.06 1.66 8.12 -2.39 -0.02 1.64 16 38 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -77.57 303.62 4.98 -72.59 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 1.02 Total: 14.97 kcal Atomic # 6 Polarization: -36.08 SS G_CDS: 4.81 Total: -31.26 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -2.88 Total: -102.90 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -77.57 4.98 -72.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258577476.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.393 kcal (2) G-P(sol) polarization free energy of solvation -77.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds