Wall clock time and date at job start Mon Mar 30 2020 05:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30321 * 125.97689 * 2 1 4 4 N 1.39873 * 109.23022 * 180.23213 * 3 2 1 5 5 C 1.46503 * 125.67421 * 179.76772 * 4 3 2 6 6 C 1.53001 * 109.47275 * 59.97640 * 5 4 3 7 7 C 1.52995 * 109.47090 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47102 * 59.99820 * 7 6 5 9 9 C 1.52999 * 109.47206 * 299.99504 * 8 7 6 10 10 C 1.52996 * 109.47201 * 299.97060 * 5 4 3 11 11 C 1.34497 * 108.64912 * 359.74370 * 4 3 2 12 12 C 1.50704 * 126.41097 * 179.97438 * 11 4 3 13 13 C 1.39279 * 107.18874 * 0.02562 * 11 4 3 14 14 C 1.41599 * 126.55830 * 179.97438 * 13 11 4 15 15 H 1.07996 * 119.99995 * 327.99525 * 14 13 11 16 16 C 1.39698 * 119.99555 * 147.99617 * 14 13 11 17 17 N 1.31028 * 120.00113 * 333.07301 * 16 14 13 18 18 Si 1.86804 * 119.99920 * 153.08337 * 16 14 13 19 19 H 1.48503 * 109.47093 * 179.97438 * 18 16 14 20 20 H 1.48504 * 109.46908 * 299.99524 * 18 16 14 21 21 H 1.48493 * 109.47244 * 59.99378 * 18 16 14 22 22 H 1.09001 * 109.47020 * 269.73600 * 1 2 3 23 23 H 1.09004 * 109.46745 * 29.72927 * 1 2 3 24 24 H 1.08997 * 109.47406 * 149.73134 * 1 2 3 25 25 H 1.09008 * 109.46670 * 179.97438 * 5 4 3 26 26 H 1.09001 * 109.46569 * 299.99988 * 6 5 4 27 27 H 1.09002 * 109.47179 * 59.99861 * 6 5 4 28 28 H 1.08999 * 109.46977 * 299.99552 * 7 6 5 29 29 H 1.09005 * 109.47150 * 179.97438 * 7 6 5 30 30 H 1.09001 * 109.46558 * 179.97438 * 8 7 6 31 31 H 1.09001 * 109.46980 * 60.00281 * 8 7 6 32 32 H 1.08999 * 109.47338 * 300.00553 * 9 8 7 33 33 H 1.09002 * 109.47090 * 179.97438 * 9 8 7 34 34 H 1.09001 * 109.47520 * 299.99966 * 10 5 4 35 35 H 1.08999 * 109.47128 * 60.00337 * 10 5 4 36 36 H 1.09005 * 109.46841 * 270.02367 * 12 11 4 37 37 H 1.08999 * 109.46949 * 30.01476 * 12 11 4 38 38 H 1.08997 * 109.47579 * 150.01973 * 12 11 4 39 39 H 0.96998 * 120.00215 * 353.15388 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2726 1.0546 0.0000 4 7 3.6120 0.6516 -0.0054 5 6 4.7730 1.5451 -0.0119 6 6 4.7426 2.4300 1.2359 7 6 5.9555 3.3626 1.2294 8 6 5.9152 4.2429 -0.0214 9 6 5.9457 3.3580 -1.2691 10 6 4.7322 2.4253 -1.2626 11 6 3.6567 -0.6926 -0.0030 12 6 4.8985 -1.5464 -0.0076 13 6 2.3405 -1.1482 0.0033 14 6 1.9155 -2.4989 0.0071 15 1 2.5079 -3.2527 -0.4900 16 6 0.7300 -2.8562 0.6539 17 7 0.2906 -2.1399 1.6592 18 14 -0.2288 -4.3553 0.0856 19 1 -1.4397 -4.5177 0.9298 20 1 -0.6336 -4.1759 -1.3319 21 1 0.6248 -5.5642 0.2074 22 1 -0.3633 -0.0047 1.0277 23 1 -0.3633 0.8925 -0.5097 24 1 -0.3634 -0.8875 -0.5180 25 1 5.6877 0.9521 -0.0146 26 1 3.8279 3.0228 1.2386 27 1 4.7718 1.8028 2.1269 28 1 6.8699 2.7694 1.2269 29 1 5.9336 3.9934 2.1181 30 1 6.7791 4.9076 -0.0257 31 1 5.0008 4.8361 -0.0188 32 1 6.8602 2.7648 -1.2715 33 1 5.9166 3.9851 -2.1601 34 1 4.7540 1.7949 -2.1515 35 1 3.8176 3.0182 -1.2599 36 1 5.1930 -1.7538 -1.0364 37 1 5.7046 -1.0180 0.5014 38 1 4.6963 -2.4848 0.5087 39 1 0.8357 -1.4226 2.0185 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258580034.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:20 Heat of formation + Delta-G solvation = 18.308793 kcal Electronic energy + Delta-G solvation = -18706.340701 eV Core-core repulsion = 16034.143283 eV Total energy + Delta-G solvation = -2672.197418 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.65604 -39.19734 -35.82996 -33.98984 -32.51793 -31.79788 -30.56891 -29.03657 -27.52352 -25.69504 -23.58495 -23.16568 -21.50539 -20.71354 -19.59460 -18.83443 -17.25743 -16.09985 -15.93695 -15.68171 -15.19233 -15.10689 -14.72575 -14.68775 -14.04446 -13.96641 -13.77458 -13.63809 -13.47732 -13.23767 -13.15560 -12.69113 -12.52054 -12.45670 -12.14926 -12.12060 -11.90681 -11.73715 -11.52809 -11.32330 -11.17245 -10.80031 -10.48580 -9.51474 -9.06119 -8.71961 -5.98504 1.26193 1.57945 1.61961 1.85730 2.02611 2.28813 2.53291 3.32014 3.51363 3.72370 3.88079 4.05805 4.17228 4.21165 4.27918 4.38462 4.43139 4.46371 4.50177 4.58187 4.67749 4.79514 4.84489 4.91439 4.97004 5.01915 5.10557 5.14969 5.15470 5.18415 5.24389 5.31044 5.39164 5.48045 5.73215 5.90273 6.14989 6.30791 6.74463 7.03554 7.24855 7.44557 8.46202 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.040846 B = 0.005909 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.329269 B = 4737.453936 C = 4954.410744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 C -0.003 4.003 3 N -0.332 5.332 4 N -0.366 5.366 5 C 0.164 3.836 6 C -0.119 4.119 7 C -0.108 4.108 8 C -0.118 4.118 9 C -0.107 4.107 10 C -0.118 4.118 11 C -0.080 4.080 12 C -0.046 4.046 13 C -0.064 4.064 14 C -0.557 4.557 15 H 0.052 0.948 16 C 0.005 3.995 17 N -0.849 5.849 18 Si 1.106 2.894 19 H -0.277 1.277 20 H -0.271 1.271 21 H -0.268 1.268 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.104 0.896 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.072 8.205 -3.047 14.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.167 4.167 3 N -0.158 5.158 4 N -0.153 5.153 5 C 0.063 3.937 6 C -0.157 4.157 7 C -0.146 4.146 8 C -0.156 4.156 9 C -0.145 4.145 10 C -0.156 4.156 11 C -0.204 4.204 12 C -0.104 4.104 13 C -0.073 4.073 14 C -0.591 4.591 15 H 0.070 0.930 16 C -0.205 4.205 17 N -0.476 5.476 18 Si 0.926 3.074 19 H -0.202 1.202 20 H -0.197 1.197 21 H -0.193 1.193 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.122 0.878 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.808 8.684 -2.763 13.388 hybrid contribution 1.010 -0.148 -0.099 1.026 sum 10.818 8.536 -2.862 14.074 Atomic orbital electron populations 1.19884 0.87512 1.00502 1.01381 1.22669 0.96749 0.91567 1.05760 1.76263 0.88054 1.23991 1.27472 1.47903 1.03900 1.03814 1.59687 1.21372 0.84813 0.90512 0.97007 1.21803 1.00179 0.97903 0.95862 1.21508 0.96441 0.97421 0.99182 1.21574 1.02693 0.97737 0.93554 1.21518 0.96508 0.97404 0.99110 1.21812 1.00155 0.97890 0.95778 1.21749 0.97470 0.84479 1.16677 1.19903 0.91489 0.97490 1.01517 1.18229 0.89917 0.94273 1.04929 1.19494 1.10611 0.92366 1.36624 0.92998 1.27674 0.96515 1.04103 0.92241 1.70665 1.40226 1.18141 1.18575 0.83133 0.75411 0.72232 0.76598 1.20221 1.19668 1.19277 0.92127 0.92421 0.92445 0.87823 0.93212 0.93498 0.90260 0.90418 0.89150 0.92770 0.90257 0.90257 0.93122 0.93146 0.91820 0.91008 0.92106 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.70 8.53 71.24 0.61 -1.09 16 2 C 0.00 -0.18 6.51 43.69 0.28 0.10 16 3 N -0.33 -16.97 12.30 -46.36 -0.57 -17.54 16 4 N -0.37 -16.56 3.25 -311.41 -1.01 -17.57 16 5 C 0.16 5.48 2.89 44.99 0.13 5.61 16 6 C -0.12 -3.61 5.45 30.59 0.17 -3.44 16 7 C -0.11 -2.18 5.92 30.59 0.18 -2.00 16 8 C -0.12 -2.14 5.92 30.59 0.18 -1.96 16 9 C -0.11 -2.12 5.93 30.61 0.18 -1.93 16 10 C -0.12 -3.47 5.46 30.61 0.17 -3.30 16 11 C -0.08 -3.90 7.06 42.40 0.30 -3.60 16 12 C -0.05 -1.77 9.76 71.24 0.70 -1.08 16 13 C -0.06 -3.57 5.19 -21.30 -0.11 -3.68 16 14 C -0.56 -31.71 8.83 23.45 0.21 -31.50 16 15 H 0.05 2.93 7.97 -2.91 -0.02 2.91 16 16 C 0.01 0.28 3.90 85.17 0.33 0.61 16 17 N -0.85 -48.37 11.29 21.79 0.25 -48.12 16 18 Si 1.11 46.97 30.01 68.60 2.06 49.03 16 19 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 20 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 21 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 22 H 0.06 3.09 6.86 -2.39 -0.02 3.08 16 23 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 24 H 0.06 2.93 7.02 -2.39 -0.02 2.91 16 25 H 0.10 3.06 6.64 -2.38 -0.02 3.04 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 36 H 0.06 2.25 8.14 -2.38 -0.02 2.24 16 37 H 0.07 2.30 7.08 -2.39 -0.02 2.28 16 38 H 0.06 2.49 7.98 -2.39 -0.02 2.47 16 39 H 0.27 16.07 6.81 -92.71 -0.63 15.44 16 Total: -1.00 -66.70 307.57 5.19 -61.50 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 1.15 Total: 19.94 kcal Atomic # 6 Polarization: -50.56 SS G_CDS: 3.32 Total: -47.24 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -1.34 Total: -83.23 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.06 Total: 49.03 kcal Total: -66.70 5.19 -61.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258580034.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.812 kcal (2) G-P(sol) polarization free energy of solvation -66.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds