Wall clock time and date at job start Mon Mar 30 2020 06:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 N 1.46906 * 109.46897 * 60.00033 * 4 2 1 6 6 C 1.46898 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.47138 * 180.02562 * 6 5 4 8 8 C 1.50690 * 109.47266 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00616 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99960 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00271 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00044 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47698 * 90.00269 * 12 10 8 14 14 H 1.48507 * 109.47219 * 210.00330 * 12 10 8 15 15 H 1.48504 * 109.47077 * 329.99943 * 12 10 8 16 16 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 17 17 C 1.38673 * 120.41652 * 299.71717 * 16 2 1 18 18 C 1.38623 * 118.42213 * 179.78144 * 17 16 2 19 19 C 1.38225 * 119.15745 * 0.51520 * 18 17 16 20 20 N 1.31854 * 120.76886 * 359.72907 * 19 18 17 21 21 C 1.31888 * 121.72041 * 359.97438 * 20 19 18 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 26 26 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 28 28 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 30 30 H 1.00896 * 111.00031 * 56.04700 * 5 4 2 31 31 H 1.08997 * 109.47334 * 299.99788 * 6 5 4 32 32 H 1.09004 * 109.47141 * 60.00372 * 6 5 4 33 33 H 1.09002 * 109.46704 * 300.00539 * 7 6 5 34 34 H 1.09000 * 109.46950 * 59.99360 * 7 6 5 35 35 H 0.96998 * 120.00453 * 180.02562 * 11 10 8 36 36 H 1.08008 * 120.78804 * 0.02562 * 17 16 2 37 37 H 1.07997 * 120.42155 * 180.22623 * 18 17 16 38 38 H 1.08004 * 119.61779 * 179.74938 * 19 18 17 39 39 H 1.08000 * 119.61599 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.5503 -0.0287 -2.4487 6 6 2.0209 -0.6952 -3.6703 7 6 1.4924 0.0534 -4.8956 8 6 1.9755 -0.6299 -6.1487 9 1 2.5971 -1.5103 -6.0785 10 6 1.6233 -0.1317 -7.3852 11 7 0.8660 0.9401 -7.4709 12 14 2.2217 -0.9791 -8.9386 13 1 1.2369 -2.0115 -9.3502 14 1 2.3701 0.0238 -10.0238 15 1 3.5340 -1.6232 -8.6770 16 6 2.0324 -0.7105 1.2305 17 6 1.7075 -0.2409 2.4942 18 6 2.1880 -0.9290 3.5974 19 6 2.9784 -2.0461 3.4026 20 7 3.2714 -2.4612 2.1859 21 6 2.8269 -1.8349 1.1137 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6768 1.9562 0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 3.1300 -0.7217 -1.2490 29 1 1.6766 -1.7489 -1.2493 30 1 1.8198 0.9435 -2.4402 31 1 3.1107 -0.6954 -3.6873 32 1 1.6570 -1.7226 -3.6869 33 1 0.4025 0.0540 -4.8787 34 1 1.8565 1.0806 -4.8787 35 1 0.6179 1.2904 -8.3407 36 1 1.0913 0.6378 2.6159 37 1 1.9518 -0.5938 4.5965 38 1 3.3602 -2.5855 4.2569 39 1 3.0883 -2.2043 0.1331 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258855731.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:09 Heat of formation + Delta-G solvation = 15.704466 kcal Electronic energy + Delta-G solvation = -17587.019936 eV Core-core repulsion = 14914.709585 eV Total energy + Delta-G solvation = -2672.310350 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.61352 -37.68324 -34.75676 -32.80464 -32.14236 -30.39295 -29.08951 -27.22863 -25.95184 -24.09944 -23.44409 -22.46551 -20.58739 -19.20528 -17.41711 -16.43438 -16.21276 -15.53461 -15.19928 -14.51581 -14.41849 -14.27621 -13.86326 -13.34566 -13.28201 -13.05187 -12.78869 -12.25133 -12.16917 -12.03640 -11.73390 -11.20681 -11.13530 -10.93647 -10.90795 -10.71210 -10.46274 -9.99408 -9.87761 -9.48199 -9.36223 -9.14561 -9.05922 -8.34965 -7.81362 -5.99638 -4.02071 0.99118 1.15314 3.32664 3.38742 3.42008 3.68787 4.26708 4.41157 4.52121 4.58439 4.78246 4.85102 4.95655 5.05885 5.11256 5.19518 5.36481 5.44553 5.60764 5.67883 5.75418 5.80250 5.89846 5.97497 6.00573 6.00847 6.23131 6.28707 6.33664 6.43605 6.46609 6.60508 6.98173 7.46178 7.72619 7.81773 7.86497 7.95401 8.08244 8.43942 9.05257 9.61795 11.11792 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.045171 B = 0.003728 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.712396 B = 7508.598803 C = 7924.631555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.020 4.020 3 C -0.142 4.142 4 C 0.064 3.936 5 N -0.688 5.688 6 C 0.065 3.935 7 C 0.026 3.974 8 C -0.522 4.522 9 H 0.054 0.946 10 C 0.058 3.942 11 N -0.894 5.894 12 Si 0.892 3.108 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.274 1.274 16 C -0.112 4.112 17 C -0.073 4.073 18 C -0.173 4.173 19 C 0.085 3.915 20 N -0.483 5.483 21 C 0.095 3.905 22 H 0.079 0.921 23 H 0.045 0.955 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.336 0.664 31 H 0.015 0.985 32 H 0.058 0.942 33 H 0.025 0.975 34 H 0.013 0.987 35 H 0.260 0.740 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.152 0.848 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.540 -0.825 21.371 21.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.021 4.021 3 C -0.199 4.199 4 C -0.065 4.065 5 N -0.319 5.319 6 C -0.063 4.063 7 C -0.012 4.012 8 C -0.561 4.561 9 H 0.072 0.928 10 C -0.144 4.144 11 N -0.533 5.533 12 Si 0.720 3.280 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.115 4.115 17 C -0.099 4.099 18 C -0.193 4.193 19 C -0.072 4.072 20 N -0.191 5.191 21 C -0.061 4.061 22 H 0.098 0.902 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.154 0.846 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.031 0.969 35 H 0.070 0.930 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.169 0.831 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.387 -1.783 21.131 21.251 hybrid contribution 0.721 0.572 -0.736 1.178 sum 2.108 -1.211 20.395 20.539 Atomic orbital electron populations 1.21761 0.92493 1.02097 1.02162 1.19496 0.96859 0.94921 0.90855 1.21916 1.00846 0.94646 1.02494 1.22049 0.96453 0.98292 0.89736 1.60616 1.63662 1.06205 1.01445 1.22164 0.96063 0.98606 0.89459 1.19058 0.97200 0.95026 0.89870 1.21184 1.31568 1.12286 0.91023 0.92761 1.25000 0.95174 0.95029 0.99150 1.69968 1.36561 1.22352 1.24407 0.86592 0.79183 0.79259 0.82943 1.20625 1.21237 1.19913 1.20957 0.98113 0.96837 0.95556 1.21431 0.97573 0.99061 0.91791 1.22110 0.99934 0.97479 0.99748 1.22736 0.95280 0.94317 0.94894 1.67722 1.21363 1.30987 0.99071 1.22896 0.93579 0.91915 0.97712 0.90180 0.93584 0.92878 0.92593 0.92834 0.91012 0.95530 0.91038 0.84558 0.96669 0.92331 0.95648 0.96873 0.93001 0.84966 0.85020 0.83092 0.82472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.14 37.16 0.30 -1.19 16 2 C -0.02 -0.23 0.68 -155.66 -0.11 -0.34 16 3 C -0.14 -1.52 7.96 37.15 0.30 -1.23 16 4 C 0.06 0.90 3.31 -3.82 -0.01 0.88 16 5 N -0.69 -11.67 5.71 -113.77 -0.65 -12.32 16 6 C 0.07 1.35 5.62 -3.82 -0.02 1.33 16 7 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 8 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 9 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 12 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 C -0.11 -1.27 4.76 -104.48 -0.50 -1.77 16 17 C -0.07 -0.70 8.85 -39.28 -0.35 -1.05 16 18 C -0.17 -1.52 10.11 -39.44 -0.40 -1.92 16 19 C 0.08 0.86 11.18 -17.55 -0.20 0.66 16 20 N -0.48 -6.16 10.36 -13.25 -0.14 -6.29 16 21 C 0.10 1.19 10.15 -17.55 -0.18 1.01 16 22 H 0.08 1.05 7.60 -51.93 -0.39 0.66 16 23 H 0.05 0.45 7.47 -51.93 -0.39 0.06 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.51 7.44 -51.93 -0.39 0.13 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.81 6.57 -51.93 -0.34 0.47 16 28 H 0.03 0.37 7.53 -51.93 -0.39 -0.02 16 29 H 0.07 1.02 7.53 -51.93 -0.39 0.62 16 30 H 0.34 5.50 6.77 -39.29 -0.27 5.24 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.13 1.04 7.26 -52.48 -0.38 0.66 16 37 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.16 1.89 5.91 -52.49 -0.31 1.58 16 LS Contribution 315.91 15.07 4.76 4.76 Total: -1.00 -30.88 315.91 -8.20 -39.08 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.17 Total: 0.91 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -1.72 Total: -16.66 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: -0.05 Total: -44.80 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.88 -8.20 -39.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258855731.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.788 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds