Wall clock time and date at job start Mon Mar 30 2020 06:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 N 1.46906 * 109.46897 * 60.00033 * 4 2 1 6 6 C 1.46898 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.47138 * 180.02562 * 6 5 4 8 8 C 1.50690 * 109.47266 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00616 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99960 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00271 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00044 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47698 * 90.00269 * 12 10 8 14 14 H 1.48507 * 109.47219 * 210.00330 * 12 10 8 15 15 H 1.48504 * 109.47077 * 329.99943 * 12 10 8 16 16 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 17 17 C 1.38673 * 120.41652 * 299.71717 * 16 2 1 18 18 C 1.38623 * 118.42213 * 179.78144 * 17 16 2 19 19 C 1.38225 * 119.15745 * 0.51520 * 18 17 16 20 20 N 1.31854 * 120.76886 * 359.72907 * 19 18 17 21 21 C 1.31888 * 121.72041 * 359.97438 * 20 19 18 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 26 26 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 28 28 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 30 30 H 1.00896 * 111.00031 * 56.04700 * 5 4 2 31 31 H 1.08997 * 109.47334 * 299.99788 * 6 5 4 32 32 H 1.09004 * 109.47141 * 60.00372 * 6 5 4 33 33 H 1.09002 * 109.46704 * 300.00539 * 7 6 5 34 34 H 1.09000 * 109.46950 * 59.99360 * 7 6 5 35 35 H 0.96998 * 120.00453 * 180.02562 * 11 10 8 36 36 H 1.08008 * 120.78804 * 0.02562 * 17 16 2 37 37 H 1.07997 * 120.42155 * 180.22623 * 18 17 16 38 38 H 1.08004 * 119.61779 * 179.74938 * 19 18 17 39 39 H 1.08000 * 119.61599 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.5503 -0.0287 -2.4487 6 6 2.0209 -0.6952 -3.6703 7 6 1.4924 0.0534 -4.8956 8 6 1.9755 -0.6299 -6.1487 9 1 2.5971 -1.5103 -6.0785 10 6 1.6233 -0.1317 -7.3852 11 7 0.8660 0.9401 -7.4709 12 14 2.2217 -0.9791 -8.9386 13 1 1.2369 -2.0115 -9.3502 14 1 2.3701 0.0238 -10.0238 15 1 3.5340 -1.6232 -8.6770 16 6 2.0324 -0.7105 1.2305 17 6 1.7075 -0.2409 2.4942 18 6 2.1880 -0.9290 3.5974 19 6 2.9784 -2.0461 3.4026 20 7 3.2714 -2.4612 2.1859 21 6 2.8269 -1.8349 1.1137 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6768 1.9562 0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 3.1300 -0.7217 -1.2490 29 1 1.6766 -1.7489 -1.2493 30 1 1.8198 0.9435 -2.4402 31 1 3.1107 -0.6954 -3.6873 32 1 1.6570 -1.7226 -3.6869 33 1 0.4025 0.0540 -4.8787 34 1 1.8565 1.0806 -4.8787 35 1 0.6179 1.2904 -8.3407 36 1 1.0913 0.6378 2.6159 37 1 1.9518 -0.5938 4.5965 38 1 3.3602 -2.5855 4.2569 39 1 3.0883 -2.2043 0.1331 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258855731.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:09 Heat of formation + Delta-G solvation = -3.487881 kcal Electronic energy + Delta-G solvation = -17587.852178 eV Core-core repulsion = 14914.709585 eV Total energy + Delta-G solvation = -2673.142593 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.44833 -38.77308 -36.31742 -34.66174 -33.06372 -31.49932 -30.65399 -28.13178 -27.36184 -25.65115 -24.32110 -23.56880 -22.43875 -20.16716 -18.52667 -18.16367 -17.32517 -16.70248 -16.46192 -16.28407 -15.37113 -15.30541 -15.03479 -14.52647 -14.45898 -14.15376 -14.04291 -13.86343 -13.41279 -13.15720 -12.94146 -12.79679 -12.66208 -12.45475 -12.14402 -11.99617 -11.84014 -11.73691 -11.35439 -11.14969 -10.66149 -10.56010 -10.30836 -9.86902 -9.25533 -8.20331 -6.31516 0.20827 0.38474 1.40447 1.41838 1.52793 2.40550 2.89089 3.13147 3.25537 3.54643 3.69867 3.87708 4.03181 4.10473 4.12208 4.25900 4.36051 4.51148 4.56608 4.66015 4.74494 4.76480 4.85179 4.87594 5.01230 5.05341 5.07702 5.11004 5.21062 5.36147 5.42602 5.45303 5.51487 5.68584 5.78785 5.82983 6.13632 6.27634 6.55713 6.85765 7.06388 7.37671 8.91735 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.045171 B = 0.003728 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.712396 B = 7508.598803 C = 7924.631555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.011 4.011 3 C -0.140 4.140 4 C 0.067 3.933 5 N -0.688 5.688 6 C 0.083 3.917 7 C 0.033 3.967 8 C -0.546 4.546 9 H 0.059 0.941 10 C 0.002 3.998 11 N -0.931 5.931 12 Si 0.966 3.034 13 H -0.272 1.272 14 H -0.281 1.281 15 H -0.264 1.264 16 C -0.119 4.119 17 C -0.074 4.074 18 C -0.163 4.163 19 C 0.075 3.925 20 N -0.514 5.514 21 C 0.073 3.927 22 H 0.061 0.939 23 H 0.069 0.931 24 H 0.043 0.957 25 H 0.077 0.923 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.340 0.660 31 H 0.016 0.984 32 H 0.056 0.944 33 H -0.004 1.004 34 H -0.008 1.008 35 H 0.264 0.736 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.177 0.823 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.852 -0.927 22.992 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.012 4.012 3 C -0.197 4.197 4 C -0.062 4.062 5 N -0.320 5.320 6 C -0.046 4.046 7 C -0.004 4.004 8 C -0.585 4.585 9 H 0.077 0.923 10 C -0.196 4.196 11 N -0.571 5.571 12 Si 0.790 3.210 13 H -0.198 1.198 14 H -0.206 1.206 15 H -0.188 1.188 16 C -0.122 4.122 17 C -0.100 4.100 18 C -0.182 4.182 19 C -0.082 4.082 20 N -0.222 5.222 21 C -0.082 4.082 22 H 0.080 0.920 23 H 0.088 0.912 24 H 0.062 0.938 25 H 0.096 0.904 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.046 0.954 29 H 0.084 0.916 30 H 0.159 0.841 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.014 0.986 34 H 0.011 0.989 35 H 0.073 0.927 36 H 0.173 0.827 37 H 0.185 0.815 38 H 0.194 0.806 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.703 -1.888 22.767 22.909 hybrid contribution 0.608 0.614 -1.131 1.424 sum 2.311 -1.274 21.636 21.796 Atomic orbital electron populations 1.21718 0.92421 1.01585 1.02430 1.19364 0.96756 0.95225 0.89854 1.21903 1.00680 0.93985 1.03130 1.22081 0.96551 0.98087 0.89486 1.60511 1.63817 1.06455 1.01192 1.21776 0.95754 0.97854 0.89222 1.18900 0.95225 0.94419 0.91861 1.21626 1.31827 1.12685 0.92320 0.92315 1.25954 0.95152 0.95659 1.02882 1.70098 1.37645 1.23824 1.25488 0.85441 0.79030 0.78214 0.78309 1.19778 1.20624 1.18822 1.20867 0.98516 0.96713 0.96060 1.21741 0.97407 0.99679 0.91143 1.22482 0.98289 0.96298 1.01144 1.23271 0.95268 0.95019 0.94672 1.67688 1.22470 1.31997 1.00086 1.22845 0.94864 0.92886 0.97635 0.91983 0.91196 0.93769 0.90384 0.93094 0.91932 0.95383 0.91553 0.84107 0.96541 0.92570 0.98579 0.98936 0.92721 0.82675 0.81516 0.80629 0.83455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.77 8.14 71.98 0.59 -2.18 16 2 C -0.01 -0.24 0.68 -52.93 -0.04 -0.28 16 3 C -0.14 -2.80 7.96 71.98 0.57 -2.23 16 4 C 0.07 1.88 3.31 86.30 0.29 2.17 16 5 N -0.69 -23.77 5.71 -513.87 -2.94 -26.71 16 6 C 0.08 3.52 5.62 86.31 0.49 4.00 16 7 C 0.03 1.79 5.23 29.85 0.16 1.95 16 8 C -0.55 -31.54 9.11 25.60 0.23 -31.30 16 9 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 10 C 0.00 0.09 5.46 84.66 0.46 0.55 16 11 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 12 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 14 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 15 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 16 C -0.12 -2.53 4.76 -19.77 -0.09 -2.62 16 17 C -0.07 -1.20 8.85 22.47 0.20 -1.00 16 18 C -0.16 -2.30 10.11 22.36 0.23 -2.07 16 19 C 0.07 1.34 11.18 84.69 0.95 2.29 16 20 N -0.51 -12.71 10.36 -195.84 -2.03 -14.74 16 21 C 0.07 1.81 10.15 84.67 0.86 2.67 16 22 H 0.06 1.61 7.60 -2.39 -0.02 1.59 16 23 H 0.07 1.21 7.47 -2.39 -0.02 1.19 16 24 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.08 1.22 7.44 -2.39 -0.02 1.20 16 26 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.37 6.57 -2.39 -0.02 1.35 16 28 H 0.03 0.79 7.53 -2.39 -0.02 0.77 16 29 H 0.07 1.92 7.53 -2.39 -0.02 1.91 16 30 H 0.34 11.34 6.77 -89.70 -0.61 10.74 16 31 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 34 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 35 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 36 H 0.16 1.78 7.26 -2.91 -0.02 1.75 16 37 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 38 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 39 H 0.15 3.69 5.91 -2.91 -0.02 3.68 16 Total: -1.00 -67.25 315.91 2.64 -64.60 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.41 Total: 14.99 kcal Atomic # 6 Polarization: -32.95 SS G_CDS: 4.88 Total: -28.07 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -4.68 Total: -98.18 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -67.25 2.64 -64.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258855731.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.115 kcal (2) G-P(sol) polarization free energy of solvation -67.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds