Wall clock time and date at job start Mon Mar 30 2020 06:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.53002 * 109.47454 * 120.00008 * 2 1 3 5 5 N 1.46906 * 109.47053 * 300.00316 * 4 2 1 6 6 C 1.46895 * 110.99789 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.47035 * 179.97438 * 6 5 4 8 8 C 1.50692 * 109.47453 * 180.02562 * 7 6 5 9 9 H 1.08004 * 120.00058 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00172 * 180.02562 * 8 7 6 11 11 N 1.31506 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99709 * 179.97438 * 10 8 7 13 13 H 1.48509 * 109.46994 * 90.00346 * 12 10 8 14 14 H 1.48504 * 109.46919 * 209.99932 * 12 10 8 15 15 H 1.48494 * 109.47546 * 329.99868 * 12 10 8 16 16 C 1.50696 * 109.47300 * 240.00169 * 2 1 3 17 17 C 1.38650 * 120.79205 * 239.72085 * 16 2 1 18 18 C 1.38200 * 119.16490 * 179.80086 * 17 16 2 19 19 N 1.31870 * 120.76232 * 0.47716 * 18 17 16 20 20 C 1.31867 * 121.72627 * 359.74751 * 19 18 17 21 21 C 1.38205 * 120.76703 * 0.02562 * 20 19 18 22 22 H 1.09002 * 109.47067 * 299.99853 * 1 2 3 23 23 H 1.09000 * 109.47312 * 59.99880 * 1 2 3 24 24 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47140 * 300.00226 * 3 2 1 27 27 H 1.09002 * 109.47045 * 60.00133 * 3 2 1 28 28 H 1.08992 * 109.47056 * 179.97438 * 4 2 1 29 29 H 1.09004 * 109.47006 * 60.00102 * 4 2 1 30 30 H 1.00899 * 110.99484 * 303.95475 * 5 4 2 31 31 H 1.08996 * 109.47424 * 299.99656 * 6 5 4 32 32 H 1.09002 * 109.47411 * 60.00282 * 6 5 4 33 33 H 1.09007 * 109.47219 * 300.00436 * 7 6 5 34 34 H 1.09005 * 109.47157 * 59.99991 * 7 6 5 35 35 H 0.96998 * 119.99843 * 180.02562 * 11 10 8 36 36 H 1.07999 * 120.41707 * 359.97438 * 17 16 2 37 37 H 1.08006 * 119.62157 * 180.20825 * 18 17 16 38 38 H 1.08002 * 119.61593 * 179.97438 * 20 19 18 39 39 H 1.07996 * 120.41956 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.5504 -0.0288 2.4487 6 6 2.0210 -0.6952 3.6703 7 6 1.4924 0.0533 4.8956 8 6 1.9757 -0.6300 6.1488 9 1 2.5980 -1.5099 6.0784 10 6 1.6234 -0.1318 7.3852 11 7 0.8653 0.9393 7.4709 12 14 2.2219 -0.9793 8.9386 13 1 3.5240 -0.3958 9.3505 14 1 1.2268 -0.7844 10.0235 15 1 2.3907 -2.4312 8.6768 16 6 2.0324 -0.7103 -1.2304 17 6 2.8352 -1.8356 -1.1223 18 6 3.2736 -2.4632 -2.2729 19 7 2.9446 -1.9980 -3.4622 20 6 2.1868 -0.9280 -3.6029 21 6 1.7075 -0.2508 -2.4976 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 -0.7216 1.2489 29 1 1.6768 -1.7490 1.2492 30 1 1.8198 0.9436 2.4401 31 1 1.6572 -1.7226 3.6869 32 1 3.1109 -0.6954 3.6873 33 1 1.8565 1.0806 4.8788 34 1 0.4025 0.0538 4.8788 35 1 0.6178 1.2900 8.3407 36 1 3.1121 -2.2185 -0.1512 37 1 3.8966 -3.3422 -2.1973 38 1 1.9386 -0.5763 -4.5934 39 1 1.0876 0.6251 -2.6194 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258915952.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:11 Heat of formation + Delta-G solvation = 14.922399 kcal Electronic energy + Delta-G solvation = -17576.540592 eV Core-core repulsion = 14904.196328 eV Total energy + Delta-G solvation = -2672.344263 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.58561 -37.78135 -34.82736 -32.76802 -31.45183 -31.05541 -29.09737 -27.25819 -25.91684 -24.14970 -23.44396 -22.52449 -20.61490 -19.33312 -16.95248 -16.43090 -16.19925 -15.63079 -15.27955 -14.58403 -14.36101 -14.28312 -13.97864 -13.67410 -13.40715 -13.07628 -12.62330 -12.24167 -12.06930 -11.97246 -11.76690 -11.26340 -11.17056 -10.98431 -10.94435 -10.62909 -10.47982 -10.00418 -9.59177 -9.57825 -9.37738 -9.27289 -9.16661 -8.37045 -7.84574 -6.01568 -4.04157 1.01506 1.15728 3.30761 3.37122 3.40427 3.69888 4.28501 4.33886 4.45187 4.51746 4.86771 4.94716 4.99152 5.04408 5.10092 5.17635 5.34575 5.53151 5.62052 5.62922 5.70686 5.77165 5.81654 5.95207 5.96922 6.01356 6.21655 6.30166 6.33158 6.40403 6.47153 6.59338 6.95180 7.43515 7.70033 7.79728 7.84376 7.92403 8.05876 8.41599 9.03078 9.59780 11.09868 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.045301 B = 0.003710 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.935606 B = 7545.356112 C = 7959.602502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.027 4.027 3 C -0.141 4.141 4 C 0.067 3.933 5 N -0.688 5.688 6 C 0.066 3.934 7 C 0.026 3.974 8 C -0.522 4.522 9 H 0.054 0.946 10 C 0.058 3.942 11 N -0.893 5.893 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C -0.018 4.018 17 C -0.174 4.174 18 C 0.098 3.902 19 N -0.495 5.495 20 C 0.095 3.905 21 C -0.169 4.169 22 H 0.080 0.920 23 H 0.047 0.953 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.026 0.974 29 H 0.071 0.929 30 H 0.336 0.664 31 H 0.058 0.942 32 H 0.015 0.985 33 H 0.013 0.987 34 H 0.025 0.975 35 H 0.261 0.739 36 H 0.138 0.862 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.020 -1.510 -19.494 19.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.027 4.027 3 C -0.199 4.199 4 C -0.063 4.063 5 N -0.320 5.320 6 C -0.062 4.062 7 C -0.012 4.012 8 C -0.561 4.561 9 H 0.072 0.928 10 C -0.143 4.143 11 N -0.532 5.532 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.026 4.026 17 C -0.194 4.194 18 C -0.059 4.059 19 N -0.204 5.204 20 C -0.061 4.061 21 C -0.189 4.189 22 H 0.099 0.901 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.155 0.845 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.031 0.969 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.156 0.844 37 H 0.171 0.829 38 H 0.170 0.830 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.632 -2.156 -20.100 20.281 hybrid contribution 0.983 0.242 1.697 1.976 sum 2.616 -1.914 -18.403 18.686 Atomic orbital electron populations 1.21755 0.92262 1.02159 1.02321 1.19598 0.97060 0.95090 0.90984 1.21909 1.00852 0.94470 1.02652 1.22030 0.96394 0.98221 0.89639 1.60617 1.63681 1.06222 1.01468 1.22157 0.96014 0.98591 0.89475 1.19060 0.97219 0.95022 0.89858 1.21177 1.31563 1.12360 0.91020 0.92782 1.24999 0.95128 0.95058 0.99157 1.69966 1.36421 1.22420 1.24430 0.86590 0.78471 0.79950 0.82956 1.20703 1.21178 1.19872 1.20381 0.93440 0.93807 0.95021 1.22231 0.99502 0.96934 1.00715 1.22750 0.96929 0.98642 0.87554 1.67652 1.12736 1.12810 1.27198 1.22707 0.93363 0.91247 0.98828 1.21981 1.02228 1.01856 0.92828 0.90109 0.93392 0.92866 0.92820 0.92393 0.90953 0.95604 0.91106 0.84547 0.92364 0.96718 0.96879 0.95626 0.92979 0.84423 0.82926 0.83036 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 8.14 37.16 0.30 -1.18 16 2 C -0.03 -0.31 0.68 -155.66 -0.11 -0.42 16 3 C -0.14 -1.51 7.97 37.16 0.30 -1.22 16 4 C 0.07 0.92 3.33 -3.82 -0.01 0.90 16 5 N -0.69 -11.58 5.71 -113.78 -0.65 -12.23 16 6 C 0.07 1.35 5.62 -3.82 -0.02 1.33 16 7 C 0.03 0.66 5.23 -27.88 -0.15 0.52 16 8 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 9 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 11 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 12 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 16 C -0.02 -0.20 4.77 -104.32 -0.50 -0.70 16 17 C -0.17 -1.91 9.05 -39.44 -0.36 -2.27 16 18 C 0.10 1.06 11.18 -17.55 -0.20 0.86 16 19 N -0.49 -5.86 10.36 -13.25 -0.14 -5.99 16 20 C 0.10 0.96 11.18 -17.55 -0.20 0.77 16 21 C -0.17 -1.68 8.84 -39.44 -0.35 -2.03 16 22 H 0.08 1.06 7.60 -51.93 -0.39 0.66 16 23 H 0.05 0.47 7.48 -51.93 -0.39 0.08 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.53 7.48 -51.93 -0.39 0.15 16 27 H 0.07 0.81 6.57 -51.93 -0.34 0.47 16 28 H 0.03 0.35 7.55 -51.93 -0.39 -0.04 16 29 H 0.07 0.99 7.57 -51.93 -0.39 0.60 16 30 H 0.34 5.47 6.77 -39.29 -0.27 5.20 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.01 0.35 8.14 -51.92 -0.42 -0.07 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 36 H 0.14 1.42 6.07 -52.49 -0.32 1.10 16 37 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 38 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.13 1.07 7.28 -52.49 -0.38 0.68 16 LS Contribution 316.18 15.07 4.76 4.76 Total: -1.00 -30.71 316.18 -8.19 -38.90 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.19 Total: 0.98 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -1.69 Total: -16.93 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: -0.05 Total: -44.28 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.71 -8.19 -38.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258915952.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.823 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds